Rroxscaffold_7G00163430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008181
Physical Location & Seq
Reverse (-)
5690368 .. 5693795
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00163430.1

Sequence Viewer

Length: 252 bp
ATGACCTTTCTCCGACGTAAGGCGGTGGAGCAGAGGTCGGGACCGAGGCAAGGGATGGGATGGGTGTCAAAAGAGGTTTTGGGTGCCCAAAGCATGATTTTGTGGGCCTGGGCTTCTTCTCCGTTGGATTTGCTCAAGTACGGTGTTGGGAAACTTGAAGCCGTGCCGTCGCCGAGCTACGTTTTCCGGTCGGGTCCGAAAACACCAAACCGCATCACCTTGCGTGCCCCACGTGGTGGATATCGCCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.3

Weight (kDa)

11.47

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 3 cut(s) 23, 211, 247
AcvI CACGTG 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 19, 50, 236
AgsI TTSAA 1 cut(s) 158
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
AoxI GGCC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 41, 105, 194
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 2 cut(s) 41, 194
BaeGI GKGCMC 2 cut(s) 88, 229
BanI GGYRCC 1 cut(s) 83
BbrPI CACGTG 1 cut(s) 233
BccI CCATC 2 cut(s) 49, 54
BceAI ACGGC 2 cut(s) 146, 151
BciT130I CCWGG 1 cut(s) 109
BfaI CTAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 41, 194
BmgT120I GGNCC 3 cut(s) 41, 105, 194
BmiI GGNNCC 3 cut(s) 42, 85, 195
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 119
BsaAI YACGTR 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 44, 108
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 50, 236
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 44, 108
BseGI GGATG 2 cut(s) 60, 65
BseLI CCNNNNNNNGG 3 cut(s) 19, 50, 236
BseSI GKGCMC 2 cut(s) 88, 229
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 19, 50, 236
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 88, 229
BspACI CCGC 3 cut(s) 23, 211, 247
BspANI GGCC 1 cut(s) 107
BspLI GGNNCC 3 cut(s) 42, 85, 195
BspT107I GGYRCC 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 44, 108
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 2 cut(s) 60, 65
BstMCI CGRYCG 1 cut(s) 191
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstSLI GKGCMC 2 cut(s) 88, 229
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 60, 65
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 41, 105, 194
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 94
CviJI RGCY 4 cut(s) 107, 113, 161, 177
CviKI_1 RGCY 4 cut(s) 107, 113, 161, 177
CviQI GTAC 1 cut(s) 139
DraIII CACNNNGTG 1 cut(s) 236
Eco32I GATATC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 41, 194
Eco72I CACGTG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 107
EcoRV GATATC 1 cut(s) 242
FaeI CATG 1 cut(s) 97
FaiI YATR 1 cut(s) 95
FaqI GGGAC 1 cut(s) 54
FatI CATG 1 cut(s) 93
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 2 cut(s) 67, 72
Fsp4HI GCNGC 1 cut(s) 247
FspBI CTAG 1 cut(s) 250
GluI GCNGC 1 cut(s) 247
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 187
Hin1II CATG 1 cut(s) 97
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 14, 198
Hpy188III TCNNGA 1 cut(s) 39
Hpy99I CGWCG 2 cut(s) 18, 172
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4IV ACGT 3 cut(s) 16, 180, 232
HpySE526I ACGT 3 cut(s) 16, 180, 232
Hsp92II CATG 1 cut(s) 97
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 94, 121, 200
LweI GCATC 1 cut(s) 222
MaeI CTAG 1 cut(s) 250
MaeII ACGT 3 cut(s) 16, 180, 232
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 88, 229
MmeI TCCRAC 2 cut(s) 37, 105
MnlI CCTC 3 cut(s) 27, 39, 67
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 3 cut(s) 42, 85, 195
NmeAIII GCCGAG 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 1 cut(s) 248
PmaCI CACGTG 1 cut(s) 233
PmlI CACGTG 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 107
PspCI CACGTG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 3 cut(s) 42, 85, 195
PspPI GGNCC 3 cut(s) 41, 105, 194
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 1 cut(s) 247
Sau96I GGNCC 3 cut(s) 41, 105, 194
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 88, 229
SetI ASST 8 cut(s) 8, 19, 38, 78, 179, 183, 221, 235
SfaNI GCATC 1 cut(s) 222
SinI GGWCC 2 cut(s) 41, 194
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SsiI CCGC 3 cut(s) 23, 211, 247
SspMI CTAG 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 143
TaiI ACGT 3 cut(s) 19, 183, 235
TaqII GACCGA 1 cut(s) 58
TauI GCSGC 1 cut(s) 249
TspGWI ACGGA 1 cut(s) 111
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 2 cut(s) 41, 194
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.