RLG00000017654

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008181
Physical Location & Seq
Forward (+)
19503287 .. 19504380
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017654

Sequence Viewer

Length: 444 bp
ATGGGGAGAAGTAATGGCGACGTTGCCTTCTCGGATCAGGATGGCCACGAGAGTAGGGCATCTTCGGCCATCTTAGGCTCGGGTCAAGTTGACGGTGAGGGGCCGAATTTTGATCCAATTTCCCAGCGCGTTGGAGCGGCGATCATGGTGGAGCAGCGCTTGGGTTTTGGGCTGGACCTACGCTACTTCTGGTGGAGGCTGGTGGAGTCACGTTGGTGGGAGAGGGGTGTGCCTGTTCCGACGACAGACTATGGAACAGCGGTCGGAGCTGCGATCAAGGTGGGTGCCCAAAGTAAATCCTGGTGGGCCAGGGCTTTTATTCTGGGTCGCCCAAGTAGGGCTTTGGGCTGGGTCTTCCTTATTGGGGCTTGGCAGGTGGTGAATGAGCCCGAAGCTGTTAGGGACTTTATCCATTATGTAGATGTGACCGTGGGACAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.29

Weight (kDa)

5.64

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 364
AccB1I GGYRCC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 1 cut(s) 129
AciI CCGC 2 cut(s) 137, 260
AclWI GGATC 2 cut(s) 42, 107
AcoI YGGCCR 2 cut(s) 43, 66
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 1 cut(s) 440
AfeI AGCGCT 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 337, 364
AjnI CCWGG 2 cut(s) 299, 308
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 2 cut(s) 269, 395
AluI AGCT 2 cut(s) 269, 395
AlwI GGATC 2 cut(s) 42, 107
Ama87I CYCGRG 1 cut(s) 79
Aor51HI AGCGCT 1 cut(s) 158
AoxI GGCC 4 cut(s) 43, 66, 101, 306
ApeKI GCWGC 2 cut(s) 154, 269
ApoI RAATTY 1 cut(s) 106
AspLEI GCGC 2 cut(s) 129, 159
AspS9I GGNCC 3 cut(s) 101, 175, 306
AsuHPI GGTGA 2 cut(s) 107, 391
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 289
BalI TGGCCA 1 cut(s) 45
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 1 cut(s) 390
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 346
BbvI GCAGC 2 cut(s) 166, 256
BccI CCATC 2 cut(s) 35, 77
BciT130I CCWGG 2 cut(s) 301, 310
BfoI RGCGCY 1 cut(s) 160
BfuAI ACCTGC 1 cut(s) 364
BisI GCNGC 3 cut(s) 138, 155, 270
BlsI GCNGC 3 cut(s) 139, 156, 271
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 2 cut(s) 301, 310
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 101, 175, 306
BmiI GGNNCC 2 cut(s) 102, 286
BmrFI CCNGG 2 cut(s) 301, 310
BmsI GCATC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 346
BsaJI CCNNGG 2 cut(s) 309, 429
Bsc4I CCNNNNNNNGG 2 cut(s) 337, 364
BseBI CCWGG 2 cut(s) 301, 310
BseDI CCNNGG 2 cut(s) 309, 429
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 2 cut(s) 337, 364
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 2 cut(s) 166, 256
BseYI CCCAGC 2 cut(s) 123, 348
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 4 cut(s) 45, 68, 103, 308
BshNI GGYRCC 1 cut(s) 284
BsiEI CGRYCG 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 416
BslI CCNNNNNNNGG 2 cut(s) 337, 364
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 4 cut(s) 45, 68, 103, 308
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 289, 390
Bsp143I GATC 4 cut(s) 34, 112, 141, 273
BspACI CCGC 2 cut(s) 137, 260
BspANI GGCC 4 cut(s) 45, 68, 103, 308
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 102, 286
BspMI ACCTGC 1 cut(s) 364
BspPI GGATC 2 cut(s) 42, 107
BspT107I GGYRCC 1 cut(s) 284
BsrBI CCGCTC 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 309, 429
BssMI GATC 4 cut(s) 34, 112, 141, 273
BssSI CACGAG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 301, 310
Bst4CI ACNGT 3 cut(s) 95, 430, 438
BstDEI CTNAG 1 cut(s) 73
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 129, 159
BstKTI GATC 4 cut(s) 37, 115, 144, 276
BstMBI GATC 4 cut(s) 34, 112, 141, 273
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 2 cut(s) 65, 266
BstNI CCWGG 2 cut(s) 301, 310
BstSCI CCNGG 2 cut(s) 299, 308
BstSLI GKGCMC 1 cut(s) 289
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 166, 256
BstV2I GAAGAC 1 cut(s) 346
BstXI CCANNNNNNTGG 1 cut(s) 131
BsuRI GGCC 4 cut(s) 45, 68, 103, 308
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 364
CfoI GCGC 2 cut(s) 129, 159
Cfr13I GGNCC 3 cut(s) 101, 175, 306
Csp6I GTAC 1 cut(s) 439
CviAII CATG 1 cut(s) 145
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 73
DpnI GATC 4 cut(s) 36, 114, 143, 275
DpnII GATC 4 cut(s) 34, 112, 141, 273
EaeI YGGCCR 2 cut(s) 43, 66
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 175
Eco47III AGCGCT 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 79
EcoRII CCWGG 2 cut(s) 299, 308
EcoT38I GRGCYC 1 cut(s) 390
FaeI CATG 1 cut(s) 148
FaiI YATR 3 cut(s) 146, 252, 417
FalI AAGNNNNNCTT 2 cut(s) 325, 357
FaqI GGGAC 1 cut(s) 416
FatI CATG 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 138, 155, 270
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 3 cut(s) 138, 155, 270
GlaI GCGC 2 cut(s) 128, 158
GluI GCNGC 3 cut(s) 138, 155, 270
GsaI CCCAGC 2 cut(s) 127, 352
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 4 cut(s) 45, 68, 103, 308
HhaI GCGC 2 cut(s) 129, 159
Hin1II CATG 1 cut(s) 148
Hin6I GCGC 2 cut(s) 127, 157
HinP1I GCGC 2 cut(s) 127, 157
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 206
HphI GGTGA 2 cut(s) 107, 391
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 34, 240, 266
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 23, 244
HpyAV CCTTC 1 cut(s) 37
HpyCH4III ACNGT 3 cut(s) 95, 430, 438
HpyCH4IV ACGT 2 cut(s) 21, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 266
HpyF3I CTNAG 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 21, 211
Hsp92II CATG 1 cut(s) 148
HspAI GCGC 2 cut(s) 127, 157
Kzo9I GATC 4 cut(s) 34, 112, 141, 273
LmnI GCTCC 3 cut(s) 134, 151, 266
Lsp1109I GCAGC 2 cut(s) 166, 256
LweI GCATC 1 cut(s) 68
MaeII ACGT 2 cut(s) 21, 211
MaeIII GTNAC 2 cut(s) 207, 424
MalI GATC 4 cut(s) 36, 114, 143, 275
MbiI CCGCTC 1 cut(s) 137
MboI GATC 4 cut(s) 34, 112, 141, 273
MboII GAAGA 2 cut(s) 54, 346
MhlI GDGCHC 2 cut(s) 289, 390
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 2 cut(s) 106, 117
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 3 cut(s) 112, 244, 263
MnlI CCTC 3 cut(s) 91, 189, 216
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 214
Msp20I TGGCCA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 301, 310
MvaI CCWGG 2 cut(s) 301, 310
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 65, 266
NdeII GATC 4 cut(s) 34, 112, 141, 273
NlaIII CATG 1 cut(s) 148
NlaIV GGNNCC 2 cut(s) 102, 286
NmuCI GTSAC 2 cut(s) 207, 424
OliI CACNNNNGTG 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 364
PkrI GCNGC 3 cut(s) 139, 156, 271
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 299, 308
PspFI CCCAGC 2 cut(s) 123, 348
PspGI CCWGG 2 cut(s) 299, 308
PspN4I GGNNCC 2 cut(s) 102, 286
PspPI GGNCC 3 cut(s) 101, 175, 306
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 214
SatI GCNGC 3 cut(s) 138, 155, 270
Sau3AI GATC 4 cut(s) 34, 112, 141, 273
Sau96I GGNCC 3 cut(s) 101, 175, 306
ScaI AGTACT 1 cut(s) 440
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 301, 310
SduI GDGCHC 2 cut(s) 289, 390
SetI ASST 7 cut(s) 24, 180, 214, 271, 282, 378, 397
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 214
Sse9I AATT 2 cut(s) 106, 117
SsiI CCGC 2 cut(s) 137, 260
StyD4I CCNGG 2 cut(s) 299, 308
TaaI ACNGT 3 cut(s) 95, 430, 438
TaiI ACGT 2 cut(s) 24, 214
TasI AATT 2 cut(s) 106, 117
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 140
TseFI GTSAC 2 cut(s) 207, 424
TseI GCWGC 2 cut(s) 154, 269
Tsp45I GTSAC 2 cut(s) 207, 424
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 106
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.