RLG00000002652

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008181
Physical Location & Seq
Forward (+)
37548533 .. 37549239
707 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002652

Sequence Viewer

Length: 462 bp
ATGAAGTTGAGGTCCTCGACCCGTGTTGAAGTGAGGCCGTTCGCTCCTCCTCAAACTGGTTCGATCGGGGCTTTGTGGTCGCCTTCGGTTCTGCTTAAGTCCCTTGGTGGGCAAGATTCGACGACCGAAAGATGCAGAAAGGTAGATGGTGGGCTGCCGGTGTGTGGGTCAGCGTTGATGGGAGCCATCATCGCCTGGGCTGGTTCGATCGTGGCTGGTGTCAAGCTTAGGAGTCGGTTTTCGATCCGGCTTTCCAGGGCGCTGAAGAGGCGATGGGAGCAGTGCCTGGGCGACATCTGTACTGTGGTCAGTATTGGAATTGGTGGCGGCGGGTGGTGGCGGGTTGATGGGGCCGAGAGGTTGGTTCTCCGACGAAGGGCGGTGGAGCGGTGGTCGAACCCGAGGTCAGCAACAGGATCAAGGTTGGTGCCCAGAGAGGCTTTGGGGCTTGGCAGCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.55

Weight (kDa)

11.54

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 388
AciI CCGC 5 cut(s) 327, 330, 340, 380, 388
AclWI GGATC 2 cut(s) 238, 424
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 4 cut(s) 56, 108, 164, 376
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 3 cut(s) 194, 254, 285
AluBI AGCT 2 cut(s) 226, 456
AluI AGCT 2 cut(s) 226, 456
AlwI GGATC 2 cut(s) 238, 424
AlwNI CAGNNNCTG 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 400
AoxI GGCC 2 cut(s) 35, 351
ApeKI GCWGC 2 cut(s) 154, 453
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 12, 351
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 427
BbvI GCAGC 1 cut(s) 141
BccI CCATC 5 cut(s) 140, 172, 194, 267, 341
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 3 cut(s) 196, 256, 287
BfoI RGCGCY 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 95
BisI GCNGC 3 cut(s) 155, 328, 454
BlsI GCNGC 3 cut(s) 156, 329, 455
Bme1390I CCNGG 3 cut(s) 196, 256, 287
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 2 cut(s) 12, 351
BmiI GGNNCC 3 cut(s) 184, 352, 429
BmrFI CCNGG 3 cut(s) 196, 256, 287
BmsI GCATC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 227
BsaJI CCNNGG 5 cut(s) 103, 195, 255, 286, 401
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 108, 164, 376
Bse118I RCCGGY 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 61
BseBI CCWGG 3 cut(s) 196, 256, 287
BseDI CCNNGG 5 cut(s) 103, 195, 255, 286, 401
BseLI CCNNNNNNNGG 4 cut(s) 56, 108, 164, 376
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 2 cut(s) 36, 39
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 141
Bsh1285I CGRYCG 3 cut(s) 66, 126, 210
BshFI GGCC 2 cut(s) 37, 353
BshNI GGYRCC 1 cut(s) 427
BsiEI CGRYCG 3 cut(s) 66, 126, 210
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 158, 247
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 4 cut(s) 56, 108, 164, 376
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 37, 353
BsoBI CYCGRG 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 4 cut(s) 63, 207, 243, 416
BspACI CCGC 5 cut(s) 327, 330, 340, 380, 388
BspANI GGCC 2 cut(s) 37, 353
BspLI GGNNCC 3 cut(s) 184, 352, 429
BspPI GGATC 2 cut(s) 238, 424
BspT107I GGYRCC 1 cut(s) 427
BspTI CTTAAG 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 157
BsrI ACTGG 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 5 cut(s) 103, 195, 255, 286, 401
BssMI GATC 4 cut(s) 63, 207, 243, 416
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 3 cut(s) 196, 256, 287
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 4 cut(s) 66, 210, 246, 419
BstMBI GATC 4 cut(s) 63, 207, 243, 416
BstMCI CGRYCG 3 cut(s) 66, 126, 210
BstMWI GCNNNNNNNGC 3 cut(s) 191, 268, 277
BstNI CCWGG 3 cut(s) 196, 256, 287
BstSCI CCNGG 3 cut(s) 194, 254, 285
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 141
BsuRI GGCC 2 cut(s) 37, 353
BtgZI GCGATG 2 cut(s) 175, 286
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 1 cut(s) 287
CaiI CAGNNNCTG 1 cut(s) 286
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 12, 351
Csp6I GTAC 1 cut(s) 300
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 227
DpnI GATC 4 cut(s) 65, 209, 245, 418
DpnII GATC 4 cut(s) 63, 207, 243, 416
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 12
EcoRII CCWGG 3 cut(s) 194, 254, 285
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaqI GGGAC 1 cut(s) 85
FauI CCCGC 2 cut(s) 323, 333
Fnu4HI GCNGC 3 cut(s) 155, 328, 454
Fsp4HI GCNGC 3 cut(s) 155, 328, 454
GlaI GCGC 1 cut(s) 261
GluI GCNGC 3 cut(s) 155, 328, 454
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 2 cut(s) 37, 353
HapII CCGG 2 cut(s) 158, 247
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 116, 232
HpaII CCGG 2 cut(s) 158, 247
Hpy188I TCNGA 1 cut(s) 371
Hpy99I CGWCG 2 cut(s) 124, 375
HpyAV CCTTC 2 cut(s) 93, 369
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 268, 277
HpyF3I CTNAG 1 cut(s) 227
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 4 cut(s) 63, 207, 243, 416
LmnI GCTCC 4 cut(s) 49, 182, 277, 385
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 122
MalI GATC 4 cut(s) 65, 209, 245, 418
MbiI CCGCTC 1 cut(s) 388
MboI GATC 4 cut(s) 63, 207, 243, 416
MboII GAAGA 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 9 cut(s) 3, 25, 27, 57, 60, 261, 351, 396, 430
MseI TTAA 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 456
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 2 cut(s) 158, 247
MspR9I CCNGG 3 cut(s) 196, 256, 287
MvaI CCWGG 3 cut(s) 196, 256, 287
MwoI GCNNNNNNNGC 3 cut(s) 191, 268, 277
NdeII GATC 4 cut(s) 63, 207, 243, 416
NlaIV GGNNCC 3 cut(s) 184, 352, 429
NmeAIII GCCGAG 1 cut(s) 379
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 3 cut(s) 156, 329, 455
Ple19I CGATCG 2 cut(s) 66, 210
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 12
Psp6I CCWGG 3 cut(s) 194, 254, 285
PspGI CCWGG 3 cut(s) 194, 254, 285
PspN4I GGNNCC 3 cut(s) 184, 352, 429
PspPI GGNCC 2 cut(s) 12, 351
PspPPI RGGWCCY 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 286
PvuI CGATCG 2 cut(s) 66, 210
PvuII CAGCTG 1 cut(s) 456
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 155, 328, 454
Sau3AI GATC 4 cut(s) 63, 207, 243, 416
Sau96I GGNCC 2 cut(s) 12, 351
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 196, 256, 287
SduI GDGCHC 1 cut(s) 432
SetI ASST 7 cut(s) 14, 144, 228, 362, 407, 425, 458
SfaNI GCATC 1 cut(s) 122
SinI GGWCC 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 318
SsiI CCGC 5 cut(s) 327, 330, 340, 380, 388
StyD4I CCNGG 3 cut(s) 194, 254, 285
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 6 cut(s) 17, 62, 119, 206, 242, 395
TaqII GACCGA 1 cut(s) 140
TasI AATT 1 cut(s) 318
TatI WGTACW 1 cut(s) 299
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 287
TseI GCWGC 2 cut(s) 154, 453
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 287
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.