Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Forward (+)

65327421 .. 65331018

Gene Structure 3598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCAACAGAATAAGAAGATGATGAGAATTAGTGTTTTCCCAGAAAGCGTCACTATGCTCATACTGGTTCTCTGCTTGATCTGCATACAATCAGTTAGAGTTGAAGCACAATCAACGCGTCTTCCTGCAGAAGAAGGGACATTTTCGTCAGGAAATAGGCAGCACAACCTTTGGGCCTTGCGCATGGGTCAGGAACACTACCGCAAGGGGAATAAAAAAAAACAACCATCGAGTACGGTTCAGGCTGTATCTCCCTTTTATCTGTTATTCTCCAAGAAGTCGAGGTCCTCGACCCGTGTTGAAGCGACTTCGTTCATCCCTCCTCAGATTGGTTCGATCTGGGTCTTGAGGTCGCTTTCGGCTCGTCATCAATTTGGATTGGGGACTGTTGGTGACTGGAAAATCTGGGATCCAGGGCGTTGGTGCCTGGAGAGACGATCATTCTCCGGGATGGGTGAGATTCTTGATCGGGTCCTGGGCGGAATCTGTACTGCGGCCAATGAAATGGGTGACGGCGGGTGTTGTCGGGTTGATGGGGCCGAGAGGTTTCTTCTCCGACGAAGGGTGGTGGAGCGGTGGTCGACCCCGAGATCAGTGACCAGTGGATTCAGCGATTGCTATGCCATAGATCTGACCAGTGGGGGTTGGGTCTGCTGTAGAAATTCTTCGGTCCTCAGCGAACACCGCCACAAGACTGATGGGGCAGGCGGCGACGTCTTGCGTCGTGCGAACAAATCTGGGACGGGGTCCCTCCGACGAGGACTAGCGGCTCAGCGACTAGGGTCGAGGACAAGGCAGGTTTGGGTGCCCAGAGAGATTTTGGGTGCCCAACTATGGAACTGGGCCCTTTGTGGTTTGGGTTACTCACGTTGGGCCTTTGCTAGGGTTGGCTGGGCCTCTGCTCTGTGGGATTACTCAAGTAGGACTTTGGGCTGGGCCTTCCTTCTTGGGATTGTGCAGCTAGTGAATGAGCCCGAAGCTGTTAGGATTCGCATTTGGGATCCGGGAGACTTTTTTGGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.25

Weight (kDa)

10.13

Isoelectric Point (pI)

59.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
AatII	GACGTC	1 cut(s)	717
Acc16I	TGCGCA	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	787
AccB1I	GGYRCC	3 cut(s)	423, 805, 824
AccBSI	CCGCTC	1 cut(s)	574
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	1 cut(s)	118
AciI	CCGC	8 cut(s)	202, 480, 494, 516, 574, 685, 708, 767
AclWI	GGATC	4 cut(s)	404, 417, 995, 1008
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	1 cut(s)	661
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	2 cut(s)	235, 490
AfiI	CCNNNNNNNGG	4 cut(s)	329, 562, 834, 882
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	104, 302
AjnI	CCWGG	3 cut(s)	412, 426, 474
AluBI	AGCT	2 cut(s)	961, 980
AluI	AGCT	2 cut(s)	961, 980
Alw26I	GTCTC	2 cut(s)	427, 1002
AlwI	GGATC	4 cut(s)	404, 417, 995, 1008
Ama87I	CYCGRG	1 cut(s)	586
AoxI	GGCC	8 cut(s)	174, 495, 537, 843, 873, 894, 936, 1019
ApaI	GGGCCC	2 cut(s)	847, 1023
ApeKI	GCWGC	2 cut(s)	160, 958
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	448, 1005
AsuHPI	GGTGA	3 cut(s)	404, 467, 521
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	4 cut(s)	285, 472, 670, 747
BaeGI	GKGCMC	4 cut(s)	810, 829, 847, 1023
BamHI	GGATCC	2 cut(s)	409, 1000
BanI	GGYRCC	3 cut(s)	423, 805, 824
BanII	GRGCYC	3 cut(s)	847, 975, 1023
BarI	GAAGNNNNNNTAC	2 cut(s)	649, 681
BbsI	GAAGAC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	674
BbvI	GCAGC	2 cut(s)	172, 970
BccI	CCATC	4 cut(s)	235, 445, 527, 692
BceAI	ACGGC	1 cut(s)	529
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	3 cut(s)	414, 428, 476
BcnI	CCSGG	2 cut(s)	448, 1005
BcoDI	GTCTC	2 cut(s)	427, 1002
BfaI	CTAG	4 cut(s)	764, 779, 882, 962
BfmI	CTRYAG	2 cut(s)	126, 655
BfuAI	ACCTGC	1 cut(s)	787
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	5 cut(s)	161, 495, 709, 768, 959
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	5 cut(s)	162, 496, 710, 769, 960
Bme1390I	CCNGG	5 cut(s)	414, 428, 448, 476, 1005
Bme18I	GGWCC	4 cut(s)	285, 472, 670, 747
BmeT110I	CYCGRG	1 cut(s)	586
BmrFI	CCNGG	5 cut(s)	414, 428, 448, 476, 1005
BmrI	ACTGGG	1 cut(s)	850
BmuI	ACTGGG	1 cut(s)	850
BoxI	GACNNNNGTC	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	449
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	2 cut(s)	367, 901
BpuMI	CCSGG	2 cut(s)	448, 1005
BsaHI	GRCGYC	1 cut(s)	714
BsaJI	CCNNGG	2 cut(s)	413, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 562, 834, 882
Bse1I	ACTGG	5 cut(s)	69, 401, 600, 636, 845
BseBI	CCWGG	3 cut(s)	414, 428, 476
BseDI	CCNNGG	2 cut(s)	413, 475
BseGI	GGATG	2 cut(s)	315, 456
BseLI	CCNNNNNNNGG	4 cut(s)	329, 562, 834, 882
BseMII	CTCAG	3 cut(s)	338, 688, 785
BseNI	ACTGG	5 cut(s)	69, 401, 600, 636, 845
BseRI	GAGGAG	1 cut(s)	312
BseSI	GKGCMC	4 cut(s)	810, 829, 847, 1023
BseXI	GCAGC	2 cut(s)	172, 970
BseYI	CCCAGC	2 cut(s)	891, 933
BsgI	GTGCAG	1 cut(s)	977
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	8 cut(s)	176, 497, 539, 845, 875, 896, 938, 1021
BshNI	GGYRCC	3 cut(s)	423, 805, 824
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	447, 1004
BslFI	GGGAC	4 cut(s)	151, 397, 733, 754
BslI	CCNNNNNNNGG	4 cut(s)	329, 562, 834, 882
BsmAI	GTCTC	2 cut(s)	427, 1002
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	4 cut(s)	151, 397, 733, 754
BsnI	GGCC	8 cut(s)	176, 497, 539, 845, 875, 896, 938, 1021
BsoBI	CYCGRG	1 cut(s)	586
Bsp120I	GGGCCC	2 cut(s)	843, 1019
Bsp1286I	GDGCHC	5 cut(s)	810, 829, 847, 975, 1023
Bsp143I	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	8 cut(s)	202, 480, 494, 516, 574, 685, 708, 767
BspANI	GGCC	8 cut(s)	176, 497, 539, 845, 875, 896, 938, 1021
BspCNI	CTCAG	3 cut(s)	337, 687, 784
BspFNI	CGCG	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	4 cut(s)	404, 417, 995, 1008
BspT107I	GGYRCC	3 cut(s)	423, 805, 824
BsrBI	CCGCTC	1 cut(s)	574
BsrI	ACTGG	5 cut(s)	69, 401, 600, 636, 845
BssECI	CCNNGG	2 cut(s)	413, 475
BssMI	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
BssNI	GRCGYC	1 cut(s)	714
Bst2UI	CCWGG	3 cut(s)	414, 428, 476
Bst4CI	ACNGT	2 cut(s)	238, 388
BstACI	GRCGYC	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	3 cut(s)	324, 674, 771
BstENI	CCTNNNNNAGG	1 cut(s)	880
BstF5I	GGATG	2 cut(s)	315, 456
BstFNI	CGCG	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	8 cut(s)	81, 339, 412, 440, 469, 593, 631, 1003
BstMAI	GTCTC	2 cut(s)	427, 1002
BstMBI	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 684
BstNI	CCWGG	3 cut(s)	414, 428, 476
BstPAI	GACNNNNGTC	1 cut(s)	781
BstSCI	CCNGG	5 cut(s)	412, 426, 446, 474, 1003
BstSFI	CTRYAG	2 cut(s)	126, 655
BstSLI	GKGCMC	4 cut(s)	810, 829, 847, 1023
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	172, 970
BstV2I	GAAGAC	1 cut(s)	113
BstX2I	RGATCY	3 cut(s)	409, 628, 1000
BstXI	CCANNNNNNTGG	2 cut(s)	420, 505
BstYI	RGATCY	3 cut(s)	409, 628, 1000
BsuRI	GGCC	8 cut(s)	176, 497, 539, 845, 875, 896, 938, 1021
BtsCI	GGATG	2 cut(s)	315, 456
BtsIMutI	CAGTG	3 cut(s)	600, 607, 643
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	1 cut(s)	183
CseI	GACGC	3 cut(s)	37, 107, 710
Csp6I	GTAC	2 cut(s)	234, 489
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	2 cut(s)	234, 489
DdeI	CTNAG	3 cut(s)	324, 674, 771
DpnI	GATC	8 cut(s)	80, 338, 411, 439, 468, 592, 630, 1002
DpnII	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	495
EciI	GGCGGA	1 cut(s)	495
Eco24I	GRGCYC	3 cut(s)	847, 975, 1023
Eco47I	GGWCC	4 cut(s)	285, 472, 670, 747
Eco88I	CYCGRG	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	880
EcoO109I	RGGNCCY	5 cut(s)	285, 472, 747, 844, 1020
EcoRII	CCWGG	3 cut(s)	412, 426, 474
EcoT38I	GRGCYC	3 cut(s)	847, 975, 1023
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	56, 62, 86, 185, 621, 626, 835
FalI	AAGNNNNNCTT	2 cut(s)	910, 942
FaqI	GGGAC	4 cut(s)	151, 397, 733, 754
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	509
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	5 cut(s)	161, 495, 709, 768, 959
FokI	GGATG	2 cut(s)	302, 463
FriOI	GRGCYC	3 cut(s)	847, 975, 1023
Fsp4HI	GCNGC	5 cut(s)	161, 495, 709, 768, 959
FspBI	CTAG	4 cut(s)	764, 779, 882, 962
FspI	TGCGCA	1 cut(s)	182
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	5 cut(s)	161, 495, 709, 768, 959
GsaI	CCCAGC	2 cut(s)	895, 937
GsuI	CTGGAG	1 cut(s)	449
HaeIII	GGCC	8 cut(s)	176, 497, 539, 845, 875, 896, 938, 1021
HapII	CCGG	2 cut(s)	447, 1004
HgaI	GACGC	3 cut(s)	37, 107, 710
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HinfI	GANTC	4 cut(s)	460, 483, 606, 988
HpaII	CCGG	2 cut(s)	447, 1004
HphI	GGTGA	3 cut(s)	404, 467, 521
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	4 cut(s)	327, 557, 633, 755
Hpy188III	TCNNGA	4 cut(s)	150, 191, 346, 464
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	4 cut(s)	561, 716, 726, 759
HpyAV	CCTTC	4 cut(s)	128, 555, 949, 953
HpyCH4III	ACNGT	2 cut(s)	238, 388
HpyCH4IV	ACGT	2 cut(s)	714, 868
HpyCH4V	TGCA	4 cut(s)	4, 84, 128, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 684
HpyF3I	CTNAG	3 cut(s)	324, 674, 771
HpySE526I	ACGT	2 cut(s)	714, 868
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	181
KflI	GGGWCCC	1 cut(s)	747
Kzo9I	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	172, 970
MaeI	CTAG	4 cut(s)	764, 779, 882, 962
MaeII	ACGT	2 cut(s)	714, 868
MaeIII	GTNAC	5 cut(s)	49, 392, 509, 595, 860
MalI	GATC	8 cut(s)	80, 338, 411, 439, 468, 592, 630, 1002
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
MboII	GAAGA	5 cut(s)	28, 113, 143, 542, 657
MflI	RGATCY	3 cut(s)	409, 628, 1000
MhlI	GDGCHC	5 cut(s)	810, 829, 847, 975, 1023
MluCI	AATT	3 cut(s)	27, 371, 661
MluI	ACGCGT	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	580, 778
MroXI	GAANNNNTTC	1 cut(s)	664
MspI	CCGG	2 cut(s)	447, 1004
MspR9I	CCNGG	5 cut(s)	414, 428, 448, 476, 1005
MvaI	CCWGG	3 cut(s)	414, 428, 476
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	81, 684
NciI	CCSGG	2 cut(s)	448, 1005
NdeII	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
NlaIII	CATG	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	565
NmuCI	GTSAC	4 cut(s)	49, 392, 509, 595
NsbI	TGCGCA	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	4 cut(s)	460, 483, 606, 988
PflFI	GACNNNGTC	1 cut(s)	745
PfoI	TCCNGGA	2 cut(s)	446, 1003
PkrI	GCNGC	5 cut(s)	162, 496, 710, 769, 960
PpuMI	RGGWCCY	3 cut(s)	285, 472, 747
PshAI	GACNNNNGTC	1 cut(s)	781
Psp5II	RGGWCCY	3 cut(s)	285, 472, 747
Psp6I	CCWGG	3 cut(s)	412, 426, 474
PspFI	CCCAGC	2 cut(s)	891, 933
PspGI	CCWGG	3 cut(s)	412, 426, 474
PspOMI	GGGCCC	2 cut(s)	843, 1019
PspPPI	RGGWCCY	3 cut(s)	285, 472, 747
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	3 cut(s)	409, 628, 1000
PsyI	GACNNNGTC	1 cut(s)	745
RsaI	GTAC	2 cut(s)	235, 490
RsaNI	GTAC	2 cut(s)	234, 489
SalI	GTCGAC	1 cut(s)	580
SatI	GCNGC	5 cut(s)	161, 495, 709, 768, 959
Sau3AI	GATC	8 cut(s)	78, 336, 409, 437, 466, 590, 628, 1000
ScrFI	CCNGG	5 cut(s)	414, 428, 448, 476, 1005
SduI	GDGCHC	5 cut(s)	810, 829, 847, 975, 1023
SetI	ASST	9 cut(s)	171, 287, 353, 548, 717, 801, 871, 963, 982
SfcI	CTRYAG	2 cut(s)	126, 655
SinI	GGWCC	4 cut(s)	285, 472, 670, 747
SmlI	CTYRAG	2 cut(s)	346, 916
SmoI	CTYRAG	2 cut(s)	346, 916
Sse9I	AATT	3 cut(s)	27, 371, 661
SsiI	CCGC	8 cut(s)	202, 480, 494, 516, 574, 685, 708, 767
SspMI	CTAG	4 cut(s)	764, 779, 882, 962
StyD4I	CCNGG	5 cut(s)	412, 426, 446, 474, 1003
TaaI	ACNGT	2 cut(s)	238, 388
TaiI	ACGT	2 cut(s)	717, 871
TaqI	TCGA	6 cut(s)	230, 281, 290, 335, 581, 785
TaqII	GACCGA	1 cut(s)	658
TasI	AATT	3 cut(s)	27, 371, 661
TatI	WGTACW	1 cut(s)	488
TauI	GCSGC	3 cut(s)	497, 711, 770
TfiI	GAWTC	4 cut(s)	460, 483, 606, 988
TscAI	CASTG	3 cut(s)	600, 607, 643
TseFI	GTSAC	4 cut(s)	49, 392, 509, 595
TseI	GCWGC	2 cut(s)	160, 958
Tsp45I	GTSAC	4 cut(s)	49, 392, 509, 595
TspDTI	ATGAA	2 cut(s)	304, 516
TspRI	CASTG	3 cut(s)	600, 607, 643
Tth111I	GACNNNGTC	1 cut(s)	745
VpaK11BI	GGWCC	4 cut(s)	285, 472, 670, 747
XagI	CCTNNNNNAGG	1 cut(s)	880
XapI	RAATTY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	2 cut(s)	695, 817
XmiI	GTMKAC	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	4 cut(s)	764, 779, 882, 962
ZraI	GACGTC	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.