Rroxscaffold_4G00290760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008181
Physical Location & Seq
Forward (+)
11281572 .. 11282245
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00290760.1

Sequence Viewer

Length: 429 bp
ATGGAGAACTATTCCAGTATCGTCTTCGATGTTGGCTATTTCAGTTCACTGGTGCGCTGGAGCGGCGGCTGTCGCCTGTCTTCTTGCATCCTAGATCGAGGTGGTGATCAGGCAACAGAAGGTGAGCGAAGCAGGGTTAGGGGTCTAGTCGGGCTCTGCATTCCGATCGGTGACATTGGGGGCGGCCGGTGGTGTAGTCTTGGTGGGACCGAGATGGTCTTTCTCCGGCCAAGGGAGGCGGAGCAGCAAACGGGATCGATGTTAGGCATGGTCGGGGTGCCCAGAGAGATCTTGGGTGCCCAAAGGAGAATTATGTGGGCCTGGGCCTCTTCTTTGTTGGATTGCTCAAGTAGGGCTTTTGGTTGGGCCTTCCTTCTTGGGGAGTTGCAATTGGTGTATGAGCCCAATGCTGTTAGGGTTCGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.61

Weight (kDa)

7.61

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 277, 296
AccBSI CCGCTC 1 cut(s) 63
AciI CCGC 4 cut(s) 63, 66, 183, 239
AclWI GGATC 1 cut(s) 262
AcoI YGGCCR 2 cut(s) 184, 227
AfiI CCNNNNNNNGG 2 cut(s) 232, 379
AjnI CCWGG 1 cut(s) 320
AlwI GGATC 1 cut(s) 262
AoxI GGCC 5 cut(s) 184, 227, 318, 324, 366
ApeKI GCWGC 1 cut(s) 244
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 4 cut(s) 207, 318, 324, 366
AsuHPI GGTGA 3 cut(s) 116, 134, 182
AvaII GGWCC 1 cut(s) 207
BaeGI GKGCMC 2 cut(s) 282, 301
BanI GGYRCC 2 cut(s) 277, 296
BanII GRGCYC 2 cut(s) 156, 405
BbsI GAAGAC 2 cut(s) 16, 72
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 208
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 322
BclI TGATCA 1 cut(s) 106
BfaI CTAG 3 cut(s) 92, 146, 427
BglII AGATCT 1 cut(s) 288
BisI GCNGC 4 cut(s) 64, 67, 184, 245
BlsI GCNGC 4 cut(s) 65, 68, 185, 246
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 4 cut(s) 207, 318, 324, 366
BmiI GGNNCC 3 cut(s) 208, 279, 298
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 96
BpiI GAAGAC 2 cut(s) 16, 72
BpmI CTGGAG 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 230, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 379
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 15, 54
BseBI CCWGG 1 cut(s) 322
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 2 cut(s) 230, 321
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 232, 379
BseNI ACTGG 2 cut(s) 15, 54
BseSI GKGCMC 2 cut(s) 282, 301
BseX3I CGGCCG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 256
Bsh1285I CGRYCG 2 cut(s) 168, 187
BshFI GGCC 5 cut(s) 186, 229, 320, 326, 368
BshNI GGYRCC 2 cut(s) 277, 296
BshVI ATCGAT 1 cut(s) 257
BsiEI CGRYCG 2 cut(s) 168, 187
BsiSI CCGG 2 cut(s) 187, 226
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 232, 379
BsmFI GGGAC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 5 cut(s) 186, 229, 320, 326, 368
Bsp1286I GDGCHC 4 cut(s) 156, 282, 301, 405
Bsp143I GATC 5 cut(s) 94, 106, 165, 254, 288
BspACI CCGC 4 cut(s) 63, 66, 183, 239
BspANI GGCC 5 cut(s) 186, 229, 320, 326, 368
BspDI ATCGAT 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 208, 279, 298
BspPI GGATC 1 cut(s) 262
BspT107I GGYRCC 2 cut(s) 277, 296
BsrBI CCGCTC 1 cut(s) 63
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 2 cut(s) 15, 54
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 230, 321
BssMI GATC 5 cut(s) 94, 106, 165, 254, 288
BssT1I CCWWGG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 322
Bst6I CTCTTC 1 cut(s) 334
BstF5I GGATG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 5 cut(s) 97, 109, 168, 257, 291
BstMBI GATC 5 cut(s) 94, 106, 165, 254, 288
BstMCI CGRYCG 2 cut(s) 168, 187
BstMWI GCNNNNNNNGC 2 cut(s) 63, 72
BstNI CCWGG 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 320
BstSLI GKGCMC 2 cut(s) 282, 301
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 16, 72
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 5 cut(s) 186, 229, 320, 326, 368
BsuTUI ATCGAT 1 cut(s) 257
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 47
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 4 cut(s) 207, 318, 324, 366
ClaI ATCGAT 1 cut(s) 257
CviAII CATG 1 cut(s) 268
DpnI GATC 5 cut(s) 96, 108, 167, 256, 290
DpnII GATC 5 cut(s) 94, 106, 165, 254, 288
EaeI YGGCCR 2 cut(s) 184, 227
EagI CGGCCG 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
EciI GGCGGA 1 cut(s) 254
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 230
Eco24I GRGCYC 2 cut(s) 156, 405
Eco47I GGWCC 1 cut(s) 207
Eco52I CGGCCG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 230
EcoT38I GRGCYC 2 cut(s) 156, 405
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 1 cut(s) 271
FaiI YATR 3 cut(s) 269, 314, 399
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 64, 67, 184, 245
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 2 cut(s) 156, 405
Fsp4HI GCNGC 4 cut(s) 64, 67, 184, 245
FspBI CTAG 3 cut(s) 92, 146, 427
GlaI GCGC 1 cut(s) 56
GluI GCNGC 4 cut(s) 64, 67, 184, 245
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 5 cut(s) 186, 229, 320, 326, 368
HapII CCGG 2 cut(s) 187, 226
HhaI GCGC 1 cut(s) 57
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HpaII CCGG 2 cut(s) 187, 226
HphI GGTGA 3 cut(s) 116, 134, 182
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 113, 379, 383
HpyCH4V TGCA 3 cut(s) 87, 159, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 72
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 5 cut(s) 94, 106, 165, 254, 288
LmnI GCTCC 2 cut(s) 60, 241
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 96
MaeI CTAG 3 cut(s) 92, 146, 427
MaeIII GTNAC 1 cut(s) 170
MalI GATC 5 cut(s) 96, 108, 167, 256, 290
MbiI CCGCTC 1 cut(s) 63
MboI GATC 5 cut(s) 94, 106, 165, 254, 288
MboII GAAGA 3 cut(s) 16, 72, 321
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 4 cut(s) 156, 282, 301, 405
MluCI AATT 2 cut(s) 309, 389
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 3 cut(s) 92, 229, 337
MspI CCGG 2 cut(s) 187, 226
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 63, 72
NdeII GATC 5 cut(s) 94, 106, 165, 254, 288
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 3 cut(s) 208, 279, 298
NmuCI GTSAC 1 cut(s) 170
PctI GAATGC 1 cut(s) 159
PkrI GCNGC 4 cut(s) 65, 68, 185, 246
Ple19I CGATCG 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspN4I GGNNCC 3 cut(s) 208, 279, 298
PspPI GGNCC 4 cut(s) 207, 318, 324, 366
PsuI RGATCY 1 cut(s) 288
PvuI CGATCG 1 cut(s) 168
SatI GCNGC 4 cut(s) 64, 67, 184, 245
Sau3AI GATC 5 cut(s) 94, 106, 165, 254, 288
Sau96I GGNCC 4 cut(s) 207, 318, 324, 366
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 4 cut(s) 156, 282, 301, 405
SetI ASST 2 cut(s) 103, 124
SfaNI GCATC 1 cut(s) 96
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 2 cut(s) 309, 389
SsiI CCGC 4 cut(s) 63, 66, 183, 239
SspMI CTAG 3 cut(s) 92, 146, 427
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 230
TaqI TCGA 3 cut(s) 27, 97, 257
TaqII GACCGA 1 cut(s) 224
TasI AATT 2 cut(s) 309, 389
TauI GCSGC 3 cut(s) 66, 69, 186
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 170
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 3 cut(s) 92, 146, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.