Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008181

Physical Location & Seq

Genomic Coordinates Reverse (-)

17833309 .. 17835925

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTGGAATGGCTTCATTTCTGCTGCTGAGCTGCGTCATGTGATGACAAATCTTGAGGAGAAGCTCATTGATGAGGAAGTGGATGAGATGATTCGCGAGGCTGATATGTTGATGAGTGTTCGTCATCTTCGTCCAATCCGGGCTAGACTGAAATCAGAGGTCAGTGGTTCGGATATCGTAGTGCTAACGCTGTGGCAACAGTTGGTGGCTCGATTTTGGCCTGGGGATGGCCACGAGAGTAGGGCGTCTTCCGACATCTCGGGCTCGGTTCAAGTAGATGGTGAGGGGCCGGATTTTGATCCAGTTTCCCAGCGCGTTGGAGCGGCGATCGGGGTGGAGCAGTGCCTGGGTTTTGGGCTAGACCTGCACCACTACTTCTGGTGGAGGCTGGTGGAGTCACGTTGGTGGGAGCGGGGTGTGCCTATTCCGACGACGGACGGTAGAGCAGCGGCCGGAGCCGCGATCAAGGTGGGTGCCCAGAGAGGCTTTGGGTGCCTAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

169

Amino Acids

18.71

Weight (kDa)

5.35

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008181)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0197261 RchiOBHm_Chr7g0208591
rosa_laevigata	RLG00000002652 RLG00000007562 RLG00000012283 RLG00000015297 RLG00000015393 RLG00000015895 RLG00000017502 RLG00000017654 RLG00000019036 RLG00000019574 RLG00000019696 RLG00000024994 RLG00000027623 RLG00000030212 RLG00000030573 RLG00000032689
rosa_multiflora	Rmu_sc0001626.1_g000035 Rmu_sc0007205.1_g000015
rosa_roxburghii	Rroxscaffold_1G00046180 Rroxscaffold_4G00290760 Rroxscaffold_5G00353760 Rroxscaffold_7G00163430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	375
AccB1I	GGYRCC	2 cut(s)	476, 495
AccBSI	CCGCTC	2 cut(s)	326, 415
AccII	CGCG	3 cut(s)	99, 318, 464
AciI	CCGC	4 cut(s)	326, 415, 452, 462
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	2 cut(s)	232, 453
AcyI	GRCGYC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	223, 348
AleI	CACNNNNGTG	1 cut(s)	406
AluBI	AGCT	2 cut(s)	34, 67
AluI	AGCT	2 cut(s)	34, 67
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	262
AoxI	GGCC	4 cut(s)	221, 232, 290, 453
ApeKI	GCWGC	3 cut(s)	26, 34, 449
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	2 cut(s)	476, 495
BanII	GRGCYC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	235, 267
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	13, 21, 461
BccI	CCATC	2 cut(s)	224, 275
BciT130I	CCWGG	2 cut(s)	225, 350
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	2 cut(s)	147, 362
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	6 cut(s)	27, 35, 327, 450, 453, 462
BlpI	GCTNAGC	1 cut(s)	30
BlsI	GCNGC	6 cut(s)	28, 36, 328, 451, 454, 463
Bme1390I	CCNGG	3 cut(s)	143, 225, 350
BmeT110I	CYCGRG	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	4 cut(s)	291, 460, 478, 497
BmrFI	CCNGG	3 cut(s)	143, 225, 350
BpiI	GAAGAC	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	224, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	225, 350
BseDI	CCNNGG	2 cut(s)	224, 349
BseGI	GGATG	2 cut(s)	91, 235
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	481
BseX3I	CGGCCG	1 cut(s)	453
BseXI	GCAGC	3 cut(s)	13, 21, 461
BseYI	CCCAGC	1 cut(s)	312
BsgI	GTGCAG	1 cut(s)	353
Bsh1236I	CGCG	3 cut(s)	99, 318, 464
Bsh1285I	CGRYCG	2 cut(s)	333, 456
BshFI	GGCC	4 cut(s)	223, 234, 292, 455
BshNI	GGYRCC	2 cut(s)	476, 495
BsiEI	CGRYCG	2 cut(s)	333, 456
BsiHKCI	CYCGRG	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	142, 293, 456
BslI	CCNNNNNNNGG	1 cut(s)	230
BsnI	GGCC	4 cut(s)	223, 234, 292, 455
BsoBI	CYCGRG	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	269, 481
Bsp143I	GATC	3 cut(s)	301, 330, 465
Bsp1720I	GCTNAGC	1 cut(s)	30
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	4 cut(s)	326, 415, 452, 462
BspANI	GGCC	4 cut(s)	223, 234, 292, 455
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	3 cut(s)	99, 318, 464
BspLI	GGNNCC	4 cut(s)	291, 460, 478, 497
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	2 cut(s)	476, 495
BsrBI	CCGCTC	2 cut(s)	326, 415
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	224, 349
BssMI	GATC	3 cut(s)	301, 330, 465
BssNI	GRCGYC	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	2 cut(s)	225, 350
Bst4CI	ACNGT	2 cut(s)	204, 443
BstACI	GRCGYC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	91, 235
BstFNI	CGCG	3 cut(s)	99, 318, 464
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	304, 333, 468
BstMBI	GATC	3 cut(s)	301, 330, 465
BstMCI	CGRYCG	2 cut(s)	333, 456
BstMWI	GCNNNNNNNGC	5 cut(s)	367, 421, 458, 461, 495
BstNI	CCWGG	2 cut(s)	225, 350
BstSCI	CCNGG	3 cut(s)	141, 223, 348
BstSLI	GKGCMC	1 cut(s)	481
BstUI	CGCG	3 cut(s)	99, 318, 464
BstV1I	GCAGC	3 cut(s)	13, 21, 461
BstV2I	GAAGAC	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	320
BstZI	CGGCCG	1 cut(s)	453
BsuRI	GGCC	4 cut(s)	223, 234, 292, 455
BtsCI	GGATG	2 cut(s)	91, 235
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	172, 350
BtuMI	TCGCGA	1 cut(s)	99
BveI	ACCTGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	290
CseI	GACGC	2 cut(s)	26, 237
CviAII	CATG	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	3 cut(s)	303, 332, 467
DpnII	GATC	3 cut(s)	301, 330, 465
EaeI	YGGCCR	2 cut(s)	232, 453
EagI	CGGCCG	1 cut(s)	453
EclXI	CGGCCG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	269
Eco32I	GATATC	1 cut(s)	178
Eco52I	CGGCCG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	223, 348
EcoRV	GATATC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	1 cut(s)	44
FaiI	YATR	2 cut(s)	42, 110
FatI	CATG	1 cut(s)	40
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	27, 35, 327, 450, 453, 462
FokI	GGATG	2 cut(s)	98, 242
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	6 cut(s)	27, 35, 327, 450, 453, 462
FspBI	CTAG	2 cut(s)	147, 362
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	6 cut(s)	27, 35, 327, 450, 453, 462
GsaI	CCCAGC	1 cut(s)	316
HaeIII	GGCC	4 cut(s)	223, 234, 292, 455
HapII	CCGG	3 cut(s)	142, 293, 456
HgaI	GACGC	2 cut(s)	26, 237
HhaI	GCGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	44
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	94, 398
HpaII	CCGG	3 cut(s)	142, 293, 456
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	4 cut(s)	160, 175, 256, 432
Hpy188III	TCNNGA	2 cut(s)	56, 98
Hpy99I	CGWCG	2 cut(s)	436, 439
HpyCH4III	ACNGT	2 cut(s)	204, 443
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	5 cut(s)	367, 421, 458, 461, 495
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	1 cut(s)	44
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	301, 330, 465
LmnI	GCTCC	4 cut(s)	323, 340, 412, 458
Lsp1109I	GCAGC	3 cut(s)	13, 21, 461
MaeI	CTAG	2 cut(s)	147, 362
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	3 cut(s)	303, 332, 467
MbiI	CCGCTC	2 cut(s)	326, 415
MboI	GATC	3 cut(s)	301, 330, 465
MboII	GAAGA	2 cut(s)	122, 243
MhlI	GDGCHC	2 cut(s)	269, 481
MlsI	TGGCCA	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	3 cut(s)	279, 301, 455
MnlI	CCTC	7 cut(s)	52, 70, 94, 154, 280, 381, 479
Mox20I	TGGCCA	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	406
Msp20I	TGGCCA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	3 cut(s)	142, 293, 456
MspR9I	CCNGG	3 cut(s)	143, 225, 350
MvaI	CCWGG	2 cut(s)	225, 350
MvnI	CGCG	3 cut(s)	99, 318, 464
MwoI	GCNNNNNNNGC	5 cut(s)	367, 421, 458, 461, 495
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	3 cut(s)	301, 330, 465
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	4 cut(s)	291, 460, 478, 497
NmuCI	GTSAC	1 cut(s)	399
NruI	TCGCGA	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	6 cut(s)	28, 36, 328, 451, 454, 463
Ple19I	CGATCG	1 cut(s)	333
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	223, 348
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	2 cut(s)	223, 348
PspN4I	GGNNCC	4 cut(s)	291, 460, 478, 497
PspPI	GGNCC	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	349
PvuI	CGATCG	1 cut(s)	333
RruI	TCGCGA	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	406
SatI	GCNGC	6 cut(s)	27, 35, 327, 450, 453, 462
Sau3AI	GATC	3 cut(s)	301, 330, 465
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	143, 225, 350
SduI	GDGCHC	2 cut(s)	269, 481
SetI	ASST	6 cut(s)	36, 69, 165, 369, 406, 474
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	4 cut(s)	326, 415, 452, 462
SspMI	CTAG	2 cut(s)	147, 362
StyD4I	CCNGG	3 cut(s)	141, 223, 348
TaaI	ACNGT	2 cut(s)	204, 443
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	214
TauI	GCSGC	3 cut(s)	329, 455, 464
TfiI	GAWTC	1 cut(s)	94
TscAI	CASTG	2 cut(s)	172, 350
TseFI	GTSAC	1 cut(s)	399
TseI	GCWGC	3 cut(s)	26, 34, 449
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	1 cut(s)	7
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	172, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	147, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.