RLG00000027623

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008181
Physical Location & Seq
Forward (+)
13253400 .. 13254333
934 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027623

Sequence Viewer

Length: 720 bp
ATGTTTGAGAGCACGCCGCCTATGGGTGTGCGTTGCTACAACTTCCTCCATCTCCGATGGAGCAAATTTCCGGCACTTCCCCTAGTGTCGCAGCCTTCGAGCATGGTCCAGGCCGTCTCGTCCTTTTACCCGTTACTCTCCAAGATGTCGAGGTCTTCGATGCGTGTTGAAGCGACGTCATTCATCCTTCCTCAGGTTGGTTCGATCTGGGTCTTGAGGTTGCCTTCGGTTCTTCATCCATTTGGATTGGGGGCTGTTGGTGACTGGAAAATCTGGGATCCAGGGCGTAGTTGGTGTTCGATCCGTCCTTCCGGGGCGCTGAAGAGGCGTTGGGAGAGATCTAGGCAGAATTGCTTCCGGCGAATGATGGACGCGCGGCTGTTACAAGGTGATGGCGGCTCATTATTCAGTCTGTTCTCAGTGACAAGGCAAATCGGCGTGGAGGGTAGCGTTTGGTGTCAATCAGATGGTGTCGAGATGGTCCGGTTCCGACGAAGGGTGGTGCAGCAGTGGTCGGGGCTGAGGTCAGGGAGGCAAAGATCTGAATGGAGCAGCGTTTGGGATTTGGGTTGGAACTGCGATACATCTGGTGGAGGCGGCTGGAGTCGGGGTGGTGGGACCGGACTGTGCTTTCTCCGGCGACGGGCAGTGGTGCAGTTGTTGGGGCCGACAGACTTTGGGCTGGGCCTTCCTTCTTGGGGCTGTGCAGCGGGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.74

Weight (kDa)

10.87

Isoelectric Point (pI)

72.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 179
AccII CGCG 2 cut(s) 374, 376
AciI CCGC 5 cut(s) 17, 376, 396, 597, 710
AclWI GGATC 3 cut(s) 272, 285, 295
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 341
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 6 cut(s) 23, 193, 197, 496, 643, 698
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 2 cut(s) 108, 280
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 3 cut(s) 272, 285, 295
AoxI GGCC 3 cut(s) 111, 665, 685
ApeKI GCWGC 4 cut(s) 91, 505, 552, 707
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 319, 376
AspS9I GGNCC 5 cut(s) 106, 481, 618, 665, 685
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 272, 401
AvaII GGWCC 3 cut(s) 106, 481, 618
AxyI CCTNAGG 1 cut(s) 192
BamHI GGATCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 521
BbvI GCAGC 3 cut(s) 103, 517, 564
BccI CCATC 6 cut(s) 51, 57, 361, 386, 461, 472
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 110, 282
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 83, 342
BfoI RGCGCY 1 cut(s) 320
BglII AGATCT 2 cut(s) 338, 539
BisI GCNGC 8 cut(s) 17, 92, 377, 397, 506, 553, 598, 708
BlsI GCNGC 8 cut(s) 18, 93, 378, 398, 507, 554, 599, 709
Bme1390I CCNGG 3 cut(s) 110, 282, 313
Bme18I GGWCC 3 cut(s) 106, 481, 618
BmgT120I GGNCC 5 cut(s) 106, 481, 618, 665, 685
BmiI GGNNCC 4 cut(s) 279, 488, 619, 666
BmrFI CCNGG 3 cut(s) 110, 282, 313
BmsI GCATC 1 cut(s) 150
BpiI GAAGAC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 622
Bpu10I CCTNAGC 1 cut(s) 521
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 281, 312
BsaWI WCCGGW 2 cut(s) 483, 620
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 193, 197, 496, 643, 698
Bse1I ACTGG 1 cut(s) 269
Bse21I CCTNAGG 1 cut(s) 192
BseBI CCWGG 2 cut(s) 110, 282
BseDI CCNNGG 2 cut(s) 281, 312
BseGI GGATG 2 cut(s) 183, 235
BseLI CCNNNNNNNGG 6 cut(s) 23, 193, 197, 496, 643, 698
BseMII CTCAG 3 cut(s) 206, 432, 512
BseNI ACTGG 1 cut(s) 269
BseXI GCAGC 3 cut(s) 103, 517, 564
BseYI CCCAGC 1 cut(s) 682
BsgI GTGCAG 2 cut(s) 524, 674
Bsh1236I CGCG 2 cut(s) 374, 376
BshFI GGCC 3 cut(s) 113, 667, 687
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 6 cut(s) 71, 312, 358, 484, 621, 637
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 6 cut(s) 23, 193, 197, 496, 643, 698
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 1 cut(s) 631
BsnI GGCC 3 cut(s) 113, 667, 687
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 5 cut(s) 204, 277, 300, 338, 539
BspACI CCGC 5 cut(s) 17, 376, 396, 597, 710
BspANI GGCC 3 cut(s) 113, 667, 687
BspCNI CTCAG 3 cut(s) 205, 431, 513
BspFNI CGCG 2 cut(s) 374, 376
BspLI GGNNCC 4 cut(s) 279, 488, 619, 666
BspPI GGATC 3 cut(s) 272, 285, 295
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 281, 312
BssMI GATC 5 cut(s) 204, 277, 300, 338, 539
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 110, 282
Bst4CI ACNGT 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 3 cut(s) 192, 418, 521
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 2 cut(s) 183, 235
BstFNI CGCG 2 cut(s) 374, 376
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 2 cut(s) 319, 376
BstKTI GATC 5 cut(s) 207, 280, 303, 341, 542
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 5 cut(s) 204, 277, 300, 338, 539
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNI CCWGG 2 cut(s) 110, 282
BstSCI CCNGG 3 cut(s) 108, 280, 311
BstUI CGCG 2 cut(s) 374, 376
BstV1I GCAGC 3 cut(s) 103, 517, 564
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 3 cut(s) 277, 338, 539
BstYI RGATCY 3 cut(s) 277, 338, 539
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 3 cut(s) 113, 667, 687
BtsCI GGATG 2 cut(s) 183, 235
BtsI GCAGTG 2 cut(s) 515, 654
BtsIMutI CAGTG 3 cut(s) 426, 515, 654
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 2 cut(s) 319, 376
Cfr13I GGNCC 5 cut(s) 106, 481, 618, 665, 685
CseI GACGC 1 cut(s) 380
CviAII CATG 1 cut(s) 103
DdeI CTNAG 3 cut(s) 192, 418, 521
DpnI GATC 5 cut(s) 206, 279, 302, 340, 541
DpnII GATC 5 cut(s) 204, 277, 300, 338, 539
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco47I GGWCC 3 cut(s) 106, 481, 618
Eco57I CTGAAG 1 cut(s) 341
Eco81I CCTNAGG 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 108, 280
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 23, 104
FaqI GGGAC 1 cut(s) 631
FatI CATG 1 cut(s) 102
FauI CCCGC 1 cut(s) 703
Fnu4HI GCNGC 8 cut(s) 17, 92, 377, 397, 506, 553, 598, 708
FokI GGATG 2 cut(s) 170, 222
Fsp4HI GCNGC 8 cut(s) 17, 92, 377, 397, 506, 553, 598, 708
FspBI CTAG 2 cut(s) 83, 342
GlaI GCGC 2 cut(s) 318, 375
GluI GCNGC 8 cut(s) 17, 92, 377, 397, 506, 553, 598, 708
GsaI CCCAGC 1 cut(s) 686
GsuI CTGGAG 1 cut(s) 622
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 3 cut(s) 113, 667, 687
HapII CCGG 6 cut(s) 71, 312, 358, 484, 621, 637
HgaI GACGC 1 cut(s) 380
HhaI GCGC 2 cut(s) 319, 376
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 2 cut(s) 317, 374
HinP1I GCGC 2 cut(s) 317, 374
HinfI GANTC 1 cut(s) 604
HpaII CCGG 6 cut(s) 71, 312, 358, 484, 621, 637
HphI GGTGA 2 cut(s) 272, 401
Hpy188I TCNGA 4 cut(s) 56, 466, 491, 544
Hpy188III TCNNGA 2 cut(s) 214, 475
Hpy99I CGWCG 3 cut(s) 178, 495, 645
HpyAV CCTTC 7 cut(s) 105, 197, 234, 318, 489, 698, 702
HpyCH4III ACNGT 1 cut(s) 627
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 505, 655, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 3 cut(s) 192, 418, 521
HpySE526I ACGT 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 2 cut(s) 317, 374
Kzo9I GATC 5 cut(s) 204, 277, 300, 338, 539
LmnI GCTCC 2 cut(s) 60, 549
Lsp1109I GCAGC 3 cut(s) 103, 517, 564
LweI GCATC 1 cut(s) 150
MaeI CTAG 2 cut(s) 83, 342
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 4 cut(s) 132, 260, 381, 421
MalI GATC 5 cut(s) 206, 279, 302, 340, 541
MboI GATC 5 cut(s) 204, 277, 300, 338, 539
MboII GAAGA 3 cut(s) 147, 224, 334
MflI RGATCY 3 cut(s) 277, 338, 539
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 2 cut(s) 65, 349
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 514, 551
MnlI CCTC 9 cut(s) 56, 144, 201, 210, 318, 436, 516, 525, 587
MroXI GAANNNNTTC 1 cut(s) 353
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 6 cut(s) 71, 312, 358, 484, 621, 637
MspR9I CCNGG 3 cut(s) 110, 282, 313
MvaI CCWGG 2 cut(s) 110, 282
MvnI CGCG 2 cut(s) 374, 376
MwoI GCNNNNNNNGC 1 cut(s) 325
NciI CCSGG 1 cut(s) 313
NdeII GATC 5 cut(s) 204, 277, 300, 338, 539
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 4 cut(s) 279, 488, 619, 666
NmuCI GTSAC 2 cut(s) 260, 421
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 155
PdmI GAANNNNTTC 1 cut(s) 353
PkrI GCNGC 8 cut(s) 18, 93, 378, 398, 507, 554, 599, 709
PleI GAGTC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 612
Psp6I CCWGG 2 cut(s) 108, 280
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 108, 280
PspN4I GGNNCC 4 cut(s) 279, 488, 619, 666
PspPI GGNCC 5 cut(s) 106, 481, 618, 665, 685
PsrI GAACNNNNNNTAC 2 cut(s) 280, 312
PsuI RGATCY 3 cut(s) 277, 338, 539
SatI GCNGC 8 cut(s) 17, 92, 377, 397, 506, 553, 598, 708
Sau3AI GATC 5 cut(s) 204, 277, 300, 338, 539
Sau96I GGNCC 5 cut(s) 106, 481, 618, 665, 685
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 3 cut(s) 110, 282, 313
SduI GDGCHC 1 cut(s) 14
SetI ASST 6 cut(s) 155, 179, 198, 221, 391, 527
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 3 cut(s) 106, 481, 618
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
Sse9I AATT 2 cut(s) 65, 349
SsiI CCGC 5 cut(s) 17, 376, 396, 597, 710
SspMI CTAG 2 cut(s) 83, 342
StyD4I CCNGG 3 cut(s) 108, 280, 311
TaaI ACNGT 1 cut(s) 627
TaiI ACGT 1 cut(s) 179
TaqI TCGA 6 cut(s) 98, 149, 158, 203, 299, 474
TasI AATT 2 cut(s) 65, 349
TauI GCSGC 4 cut(s) 19, 379, 399, 600
TscAI CASTG 3 cut(s) 426, 515, 654
TseFI GTSAC 2 cut(s) 260, 421
TseI GCWGC 4 cut(s) 91, 505, 552, 707
Tsp45I GTSAC 2 cut(s) 260, 421
TspDTI ATGAA 2 cut(s) 172, 224
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 3 cut(s) 426, 515, 654
VpaK11BI GGWCC 3 cut(s) 106, 481, 618
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 2 cut(s) 83, 342
ZraI GACGTC 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.