RLG00000007562

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008181
Physical Location & Seq
Forward (+)
18204099 .. 18204519
421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007562

Sequence Viewer

Length: 318 bp
ATGGGGAGTAGCAATGGCTACATTGCCTTCCCGGATCAGGAAGGCCCCGCGAGTTGGGAGTCTTTGGATATCTCAAGCATGGCTCAAGTCGACAGTGTGCTTCCTTGGATTGGTGGCGATGTTGCAGCGGTGATCGCAGTGGAGCAGTGTATGGGCTTTGGGCTGGACCGGTGCTACATCTGGCAGCGGTGGGTGGAGGCGCGTTGGTGGGACCGGGGCGTGCCTTCTCCGACGACGAGTGGTGGAGCAGCTGTCGGAGCCGTGATCAAGGGCTTTGGGCTGGATCTTCCTTCTTGGGGCTTGGCAGCTGGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.13

Weight (kDa)

4.18

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 50, 202
AciI CCGC 3 cut(s) 48, 128, 187
AclWI GGATC 2 cut(s) 42, 291
AfiI CCNNNNNNNGG 4 cut(s) 37, 54, 110, 296
AgeI ACCGGT 1 cut(s) 168
AluBI AGCT 2 cut(s) 251, 308
AluI AGCT 2 cut(s) 251, 308
AlwI GGATC 2 cut(s) 42, 291
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 4 cut(s) 125, 184, 248, 305
AsiGI ACCGGT 1 cut(s) 168
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 3 cut(s) 44, 166, 211
AsuC2I CCSGG 2 cut(s) 32, 215
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 2 cut(s) 166, 211
BbvI GCAGC 3 cut(s) 137, 196, 260
BceAI ACGGC 1 cut(s) 245
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 2 cut(s) 32, 215
BisI GCNGC 4 cut(s) 126, 185, 249, 306
BlsI GCNGC 4 cut(s) 127, 186, 250, 307
Bme1390I CCNGG 2 cut(s) 32, 215
Bme18I GGWCC 2 cut(s) 166, 211
BmgT120I GGNCC 3 cut(s) 44, 166, 211
BmiI GGNNCC 3 cut(s) 46, 212, 259
BmrFI CCNGG 2 cut(s) 32, 215
BpuEI CTTGAG 2 cut(s) 58, 69
BpuMI CCSGG 2 cut(s) 32, 215
BsaJI CCNNGG 2 cut(s) 104, 214
BsaWI WCCGGW 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 54, 110, 296
Bse118I RCCGGY 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 19, 21
BseDI CCNNGG 2 cut(s) 104, 214
BseLI CCNNNNNNNGG 4 cut(s) 37, 54, 110, 296
BseMI GCAATG 2 cut(s) 19, 21
BseXI GCAGC 3 cut(s) 137, 196, 260
Bsh1236I CGCG 2 cut(s) 50, 202
BshFI GGCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 168
BsiSI CCGG 3 cut(s) 32, 169, 214
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 4 cut(s) 37, 54, 110, 296
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 4 cut(s) 34, 132, 264, 283
BspACI CCGC 3 cut(s) 48, 128, 187
BspANI GGCC 1 cut(s) 45
BspFNI CGCG 2 cut(s) 50, 202
BspLI GGNNCC 3 cut(s) 46, 212, 259
BspPI GGATC 2 cut(s) 42, 291
BsrDI GCAATG 2 cut(s) 19, 21
BsrFI RCCGGY 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 104, 214
BssMI GATC 4 cut(s) 34, 132, 264, 283
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 221
BstFNI CGCG 2 cut(s) 50, 202
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 4 cut(s) 37, 135, 267, 286
BstMBI GATC 4 cut(s) 34, 132, 264, 283
BstMWI GCNNNNNNNGC 2 cut(s) 134, 257
BstSCI CCNGG 2 cut(s) 30, 213
BstUI CGCG 2 cut(s) 50, 202
BstV1I GCAGC 3 cut(s) 137, 196, 260
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 132
BtsI GCAGTG 2 cut(s) 144, 152
BtsIMutI CAGTG 3 cut(s) 100, 144, 152
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 168
Cfr13I GGNCC 3 cut(s) 44, 166, 211
CspAI ACCGGT 1 cut(s) 168
CviAII CATG 1 cut(s) 79
DpnI GATC 4 cut(s) 36, 134, 266, 285
DpnII GATC 4 cut(s) 34, 132, 264, 283
Eco130I CCWWGG 1 cut(s) 104
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 166, 211
EcoO109I RGGNCCY 1 cut(s) 44
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 152
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 4 cut(s) 126, 185, 249, 306
Fsp4HI GCNGC 4 cut(s) 126, 185, 249, 306
GlaI GCGC 1 cut(s) 201
GluI GCNGC 4 cut(s) 126, 185, 249, 306
HaeIII GGCC 1 cut(s) 45
HapII CCGG 3 cut(s) 32, 169, 214
HhaI GCGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 59
HpaII CCGG 3 cut(s) 32, 169, 214
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 231, 257
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 2 cut(s) 235, 238
HpyAV CCTTC 4 cut(s) 35, 37, 234, 300
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 257
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 4 cut(s) 34, 132, 264, 283
LmnI GCTCC 3 cut(s) 142, 245, 257
LpnPI CCDG 8 cut(s) 23, 45, 149, 166, 182, 227, 266, 294
Lsp1109I GCAGC 3 cut(s) 137, 196, 260
MalI GATC 4 cut(s) 36, 134, 266, 285
MboI GATC 4 cut(s) 34, 132, 264, 283
MboII GAAGA 1 cut(s) 278
MflI RGATCY 1 cut(s) 283
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 235, 254
MnlI CCTC 1 cut(s) 190
MspA1I CMGCKG 4 cut(s) 128, 187, 251, 308
MspI CCGG 3 cut(s) 32, 169, 214
MspR9I CCNGG 2 cut(s) 32, 215
MvnI CGCG 2 cut(s) 50, 202
MwoI GCNNNNNNNGC 2 cut(s) 134, 257
NciI CCSGG 2 cut(s) 32, 215
NdeII GATC 4 cut(s) 34, 132, 264, 283
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 3 cut(s) 46, 212, 259
PfoI TCCNGGA 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 168
PkrI GCNGC 4 cut(s) 127, 186, 250, 307
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 46, 212, 259
PspPI GGNCC 3 cut(s) 44, 166, 211
PsuI RGATCY 1 cut(s) 283
PvuII CAGCTG 2 cut(s) 251, 308
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 4 cut(s) 126, 185, 249, 306
Sau3AI GATC 4 cut(s) 34, 132, 264, 283
Sau96I GGNCC 3 cut(s) 44, 166, 211
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 32, 215
SetI ASST 2 cut(s) 253, 310
SinI GGWCC 2 cut(s) 166, 211
SmlI CTYRAG 2 cut(s) 73, 84
SmoI CTYRAG 2 cut(s) 73, 84
SsiI CCGC 3 cut(s) 48, 128, 187
StyD4I CCNGG 2 cut(s) 30, 213
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 90
TscAI CASTG 3 cut(s) 100, 144, 152
TseI GCWGC 4 cut(s) 125, 184, 248, 305
TspRI CASTG 3 cut(s) 100, 144, 152
VpaK11BI GGWCC 2 cut(s) 166, 211
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.