Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

8324215 .. 8325524

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGGGTTGGGGGACGAAGGTGGGGAGGAGGAAGAAGAGGGTGGGGAGAGCGTGGCGTAGGTGAGGGAGGCGGAGGAGGAGGCGAGGGTGAGGAAGACGAGAAGGGCGAAGAGGTAAAAGGCAAAGAGAGCGGAGGAGAGGGAGGCGGTGGTAGCCATGCTCCACGGCGCGTCGATTATGCTCCGTTTGTCAACCAATTGGGACTGGTTCATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTGGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGTGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGTTGTTCTTCTTATGGAGTACTCGAATTCAATGACACTTCTCACTATGCAGGTAAGATCTTTATTTAATGGAATATTCAAAATGCATCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

167

Amino Acids

18.16

Weight (kDa)

8.58

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	268
AccBSI	CCGCTC	1 cut(s)	132
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	72, 132, 147
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	2 cut(s)	425, 497
AfiI	CCNNNNNNNGG	1 cut(s)	268
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	7 cut(s)	295, 319, 328, 344, 353, 435, 484
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	171
AsuC2I	CCSGG	2 cut(s)	370, 371
AsuHPI	GGTGA	2 cut(s)	74, 101
AvaI	CYCGRG	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	361
BceAI	ACGGC	1 cut(s)	182
BcnI	CCSGG	2 cut(s)	370, 371
BfaI	CTAG	1 cut(s)	499
BfmI	CTRYAG	1 cut(s)	310
BfuAI	ACCTGC	1 cut(s)	445
BglII	AGATCT	2 cut(s)	244, 461
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BmcAI	AGTACT	2 cut(s)	425, 497
Bme1390I	CCNGG	2 cut(s)	370, 371
BmeT110I	CYCGRG	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	370, 371
BpiI	GAAGAC	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	370, 371
BsaJI	CCNNGG	4 cut(s)	164, 369, 381, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	210, 332
BseDI	CCNNGG	4 cut(s)	164, 369, 381, 387
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	210, 332
BseRI	GAGGAG	4 cut(s)	42, 90, 93, 150
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	27, 216
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	2 cut(s)	27, 216
BsnI	GGCC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	244, 461
Bsp19I	CCATGG	2 cut(s)	381, 387
BspACI	CCGC	3 cut(s)	72, 132, 147
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	210, 332
BssECI	CCNNGG	4 cut(s)	164, 369, 381, 387
BssMI	GATC	2 cut(s)	244, 461
BssT1I	CCWWGG	2 cut(s)	381, 387
Bst6I	CTCTTC	4 cut(s)	31, 105, 314, 339
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	3 cut(s)	164, 381, 387
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	2 cut(s)	247, 464
BstMBI	GATC	2 cut(s)	244, 461
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 153, 374, 383
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	368, 369
BstSFI	CTRYAG	1 cut(s)	310
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	244, 461
BstXI	CCANNNNNNTGG	1 cut(s)	388
BstYI	RGATCY	2 cut(s)	244, 461
BsuRI	GGCC	1 cut(s)	386
BtgI	CCRYGG	3 cut(s)	164, 381, 387
BveI	ACCTGC	1 cut(s)	445
CfoI	GCGC	1 cut(s)	171
Cfr9I	CCCGGG	1 cut(s)	369
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	424, 496
CviAII	CATG	4 cut(s)	158, 282, 382, 388
CviJI	RGCY	6 cut(s)	156, 272, 356, 368, 374, 386
CviKI_1	RGCY	6 cut(s)	156, 272, 356, 368, 374, 386
CviQI	GTAC	2 cut(s)	424, 496
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	246, 463
DpnII	GATC	2 cut(s)	244, 461
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	4 cut(s)	31, 105, 314, 339
EarI	CTCTTC	4 cut(s)	31, 105, 314, 339
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	381, 387
Eco88I	CYCGRG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	381, 387
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	381, 387
FaeI	CATG	4 cut(s)	161, 285, 385, 391
FaiI	YATR	8 cut(s)	159, 180, 227, 283, 383, 389, 419, 452
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	2 cut(s)	27, 216
FatI	CATG	4 cut(s)	157, 281, 381, 387
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	499
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	161, 285, 385, 391
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	74, 101
Hpy166II	GTNNAC	2 cut(s)	193, 259
Hpy188I	TCNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	193, 259
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	12, 97
HpyCH4V	TGCA	2 cut(s)	454, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 153, 374, 383
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	4 cut(s)	161, 285, 385, 391
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	244, 461
LmnI	GCTCC	2 cut(s)	166, 187
LpnPI	CCDG	6 cut(s)	191, 258, 298, 345, 383, 440
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	499
MalI	GATC	2 cut(s)	246, 463
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	2 cut(s)	244, 461
MboII	GAAGA	9 cut(s)	45, 48, 107, 122, 206, 209, 331, 356, 404
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	2 cut(s)	244, 461
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	3 cut(s)	197, 336, 430
MluNI	TGGCCA	1 cut(s)	386
Mox20I	TGGCCA	1 cut(s)	386
Mph1103I	ATGCAT	1 cut(s)	492
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	370, 371
MunI	CAATTG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	129, 153, 374, 383
NciI	CCSGG	2 cut(s)	370, 371
NcoI	CCATGG	2 cut(s)	381, 387
NdeII	GATC	2 cut(s)	244, 461
NlaIII	CATG	4 cut(s)	161, 285, 385, 391
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	285
PciI	ACATGT	1 cut(s)	281
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	244, 461
RsaI	GTAC	2 cut(s)	425, 497
RsaNI	GTAC	2 cut(s)	424, 496
RseI	CAYNNNNRTG	1 cut(s)	386
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	2 cut(s)	244, 461
ScaI	AGTACT	2 cut(s)	425, 497
ScrFI	CCNGG	2 cut(s)	370, 371
SetI	ASST	7 cut(s)	23, 64, 117, 241, 317, 358, 459
SfcI	CTRYAG	1 cut(s)	310
SmaI	CCCGGG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	386
SrfI	GCCCGGGC	1 cut(s)	371
Sse9I	AATT	3 cut(s)	197, 336, 430
SsiI	CCGC	3 cut(s)	72, 132, 147
SspI	AATATT	1 cut(s)	480
SspMI	CTAG	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	368, 369
StyI	CCWWGG	2 cut(s)	381, 387
TaqI	TCGA	2 cut(s)	174, 428
TasI	AATT	3 cut(s)	197, 336, 430
TatI	WGTACW	2 cut(s)	423, 495
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	200, 255
TspGWI	ACGGA	1 cut(s)	174
TspMI	CCCGGG	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	268
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	369
XspI	CTAG	1 cut(s)	499
ZrmI	AGTACT	2 cut(s)	425, 497
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.