Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

42448392 .. 42452677

Gene Structure 4286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTTTCGGTACCAAAGGCGATGTCTATCCAATTGTTAGCTTACGTTGTCACTTGGCTGAGACGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCGCTGCAGAAAAAGTTGTTTTCTGGAGAACATACAAAAGAATGTCTGTCGGTAGTTGAAACGATATTTGGATCAGGCCCAAGCATGGATGGTGATTTCATTGTGATAAATTTCTTTGCTCTGCAAACAGTATTCCTGGGCTCATTCATGTCAATTAGTGGTCCATGGAATTCCACTGATGGTGGTGATCCATCAGTTGATGATAGCTCTTTAATTCAAACTGCAATAAGATATGGAAAGGATGTTGCAAAACATGATCTGCAGAACTGCAAGAACAGGAATCGTTTTCTTAAGGTTTTCATTATATGTGGCATGTGCAAATACACTGCGATAGGATTGGGAAAGATGGATTCTTTAGCCATAAAGAGATTATTATCATATTTGTCCCAGATTTGTCTGAGTGTCTTCCTTCATTGGATACTGGATGAGCTTGTTGGCAGCTTTACCTTCAACCCTTTGCAGAAAGCATTGATAAATGAATGGCTTCAGTGGTGTGATACTGAGTCTTACAGATTTGATTTTGTAGTGACATCTTTTAGGGATGAAAGTTTTATGAAGCGTCTCTTTTACATTCAGCTTCTTATATATGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

28.09

Weight (kDa)

6.29

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DBC1	PF14443	99 - 150	2.3e-12	DBC1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	232, 335
AcsI	RAATTY	2 cut(s)	262, 322
AcuI	CTGAAG	1 cut(s)	623
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflII	CTTAAG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	212, 371, 604
AjnI	CCWGG	1 cut(s)	288
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	5 cut(s)	42, 360, 583, 594, 730
AluI	AGCT	5 cut(s)	42, 360, 583, 594, 730
Alw26I	GTCTC	2 cut(s)	56, 719
AlwI	GGATC	2 cut(s)	232, 335
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	157, 591
ApoI	RAATTY	2 cut(s)	262, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
Asp700I	GAANNNNTTC	1 cut(s)	636
Asp718I	GGTACC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	230, 314
AsuHPI	GGTGA	3 cut(s)	84, 257, 350
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	144, 603
BccI	CCATC	5 cut(s)	120, 236, 326, 352, 493
BciT130I	CCWGG	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	564
BcoDI	GTCTC	2 cut(s)	56, 719
BfmI	CTRYAG	4 cut(s)	129, 138, 158, 413
BfrI	CTTAAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	2 cut(s)	158, 592
BlsI	GCNGC	2 cut(s)	159, 593
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	2 cut(s)	230, 314
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	1 cut(s)	198
BsaBI	GATNNNNATC	2 cut(s)	27, 526
BsaJI	CCNNGG	2 cut(s)	289, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	579
Bse8I	GATNNNNATC	2 cut(s)	27, 526
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	289, 317
BseGI	GGATG	4 cut(s)	247, 400, 583, 700
BseJI	GATNNNNATC	2 cut(s)	27, 526
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	51, 542, 645
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	144, 603
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	56, 719
BsmBI	CGTCTC	2 cut(s)	56, 719
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	3 cut(s)	224, 340, 409
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	3 cut(s)	52, 543, 646
BspLI	GGNNCC	1 cut(s)	13
BspMAI	CTGCAG	2 cut(s)	162, 417
BspPI	GGATC	2 cut(s)	232, 335
BspT107I	GGYRCC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	289, 317
BssMI	GATC	3 cut(s)	224, 340, 409
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	60, 551, 654
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	4 cut(s)	247, 400, 583, 700
BstKTI	GATC	3 cut(s)	227, 343, 412
BstMAI	GTCTC	2 cut(s)	56, 719
BstMBI	GATC	3 cut(s)	224, 340, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	290
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	4 cut(s)	129, 138, 158, 413
BstV1I	GCAGC	2 cut(s)	144, 603
BstV2I	GAAGAC	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	4 cut(s)	247, 400, 583, 700
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	3 cut(s)	327, 477, 647
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	230, 314
CseI	GACGC	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	7 cut(s)	122, 238, 301, 318, 407, 466, 747
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	3 cut(s)	60, 551, 654
DpnI	GATC	3 cut(s)	226, 342, 411
DpnII	GATC	3 cut(s)	224, 340, 409
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	317
Esp3I	CGTCTC	2 cut(s)	56, 719
FaeI	CATG	7 cut(s)	125, 241, 304, 321, 410, 469, 750
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	7 cut(s)	121, 237, 300, 317, 406, 465, 746
Fnu4HI	GCNGC	2 cut(s)	158, 592
FokI	GGATG	4 cut(s)	254, 407, 590, 707
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	158, 592
GluI	GCNGC	2 cut(s)	158, 592
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	701
Hin1II	CATG	7 cut(s)	125, 241, 304, 321, 410, 469, 750
HinfI	GANTC	3 cut(s)	433, 503, 656
HphI	GGTGA	3 cut(s)	84, 257, 350
Hpy188I	TCNGA	2 cut(s)	117, 552
Hpy188III	TCNNGA	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	572, 610
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	46
HpyCH4V	TGCA	8 cut(s)	160, 277, 377, 401, 415, 423, 471, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	3 cut(s)	60, 551, 654
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	7 cut(s)	125, 241, 304, 321, 410, 469, 750
KpnI	GGTACC	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	224, 340, 409
LpnPI	CCDG	9 cut(s)	111, 117, 162, 213, 275, 302, 415, 554, 560
Lsp1109I	GCAGC	2 cut(s)	144, 603
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	50, 679, 742
MalI	GATC	3 cut(s)	226, 342, 411
MboI	GATC	3 cut(s)	224, 340, 409
MboII	GAAGA	2 cut(s)	71, 550
MfeI	CAATTG	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	6 cut(s)	33, 84, 262, 306, 322, 366
MlyI	GAGTC	1 cut(s)	665
MnlI	CCTC	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	2 cut(s)	365, 444
MspCI	CTTAAG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	290
MunI	CAATTG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	3 cut(s)	224, 340, 409
NlaIII	CATG	7 cut(s)	125, 241, 304, 321, 410, 469, 750
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	3 cut(s)	50, 679, 742
NspI	RCATGY	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	433, 503
PkrI	GCNGC	2 cut(s)	159, 593
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	230, 314
PstI	CTGCAG	2 cut(s)	162, 417
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	365, 444
SatI	GCNGC	2 cut(s)	158, 592
Sau3AI	GATC	3 cut(s)	224, 340, 409
Sau96I	GGNCC	2 cut(s)	230, 314
SchI	GAGTC	1 cut(s)	665
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	9 cut(s)	44, 49, 100, 362, 450, 585, 596, 602, 732
SfcI	CTRYAG	4 cut(s)	129, 138, 158, 413
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	33, 84, 262, 306, 322, 366
StyD4I	CCNGG	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	49
TasI	AATT	6 cut(s)	33, 84, 262, 306, 322, 366
TfiI	GAWTC	2 cut(s)	433, 503
Tru1I	TTAA	2 cut(s)	365, 444
Tru9I	TTAA	2 cut(s)	365, 444
TscAI	CASTG	3 cut(s)	334, 484, 647
TseFI	GTSAC	3 cut(s)	50, 679, 742
TseI	GCWGC	2 cut(s)	157, 591
Tsp45I	GTSAC	3 cut(s)	50, 679, 742
TspDTI	ATGAA	8 cut(s)	78, 241, 289, 442, 554, 645, 711, 722
TspRI	CASTG	3 cut(s)	334, 484, 647
Vha464I	CTTAAG	1 cut(s)	443
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	2 cut(s)	262, 322
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.