Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

61024607 .. 61026182

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACATTCTGGGTGGCTCTGAAGATGGGGACGGATTGGACCTTGAGGGCCAGTTGGTCACGGTCTGTCTGGGAAGCAAAGAGATCGAGGTGGAGGAGGTATTGGTTTCTGGGGTGGGAGGAGGAAGAAGAGGGTGGGGAGGCGGAGGAGGAGGCGAGGGTGAGGAAGACGAGAAGGGCGAAGAGGTAAAAGGTAAAGAGAGCGGGAGGAGAGCAGAGGAGAGGGAAGCGGTGGTGGCCGTGCTCCACGACGCGTCGATTATGCTCCGGTTGTCAACCAATTGGGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTGGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGTGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAACAGATTGAAGCTCAGTTTTCAGCCCGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGCTGTTCTTCTTATGGAGTACTTGAATTCAATGACACTTCTCACTATGCAGGTAAGATCTTTATTTAATGGAATATTCAAAATGCATAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

209

Amino Acids

23.08

Weight (kDa)

4.94

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	80 - 132	7.5e-08	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	394
AccBSI	CCGCTC	1 cut(s)	204
AccII	CGCG	1 cut(s)	254
AciI	CCGC	3 cut(s)	144, 204, 230
AcoI	YGGCCR	2 cut(s)	237, 510
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	551, 623
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflIII	ACRYGT	2 cut(s)	252, 407
AgsI	TTSAA	8 cut(s)	421, 445, 454, 470, 479, 556, 561, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	2 cut(s)	482, 533
AluI	AGCT	2 cut(s)	482, 533
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	495
AoxI	GGCC	3 cut(s)	49, 237, 510
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	40, 49
AsuC2I	CCSGG	2 cut(s)	496, 497
AsuHPI	GGTGA	1 cut(s)	173
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	224
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcnI	CCSGG	2 cut(s)	496, 497
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	625
BfmI	CTRYAG	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	571
BglII	AGATCT	2 cut(s)	370, 587
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
BmcAI	AGTACT	2 cut(s)	551, 623
Bme1390I	CCNGG	2 cut(s)	496, 497
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	40, 49
BmrFI	CCNGG	2 cut(s)	496, 497
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	2 cut(s)	496, 497
BsaJI	CCNNGG	3 cut(s)	495, 507, 513
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	52, 293, 458
BseDI	CCNNGG	3 cut(s)	495, 507, 513
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	3 cut(s)	52, 293, 458
BseRI	GAGGAG	6 cut(s)	110, 135, 162, 165, 223, 233
BseXI	GCAGC	1 cut(s)	487
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	51, 239, 512
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	268, 496
BslFI	GGGAC	2 cut(s)	44, 299
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	44, 299
BsnI	GGCC	3 cut(s)	51, 239, 512
BsoBI	CYCGRG	1 cut(s)	495
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	84, 337, 370, 587
Bsp19I	CCATGG	2 cut(s)	507, 513
BspACI	CCGC	3 cut(s)	144, 204, 230
BspANI	GGCC	3 cut(s)	51, 239, 512
BspCNI	CTCAG	1 cut(s)	496
BspFNI	CGCG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	571
BsrBI	CCGCTC	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	52, 293, 458
BssECI	CCNNGG	3 cut(s)	495, 507, 513
BssMI	GATC	4 cut(s)	84, 337, 370, 587
BssT1I	CCWWGG	2 cut(s)	507, 513
Bst4CI	ACNGT	2 cut(s)	64, 307
Bst6I	CTCTTC	3 cut(s)	124, 177, 440
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	2 cut(s)	507, 513
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	4 cut(s)	87, 340, 373, 590
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	4 cut(s)	84, 337, 370, 587
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 500, 509
BstNSI	RCATGY	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	494, 495
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	370, 587
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	2 cut(s)	370, 587
BsuRI	GGCC	3 cut(s)	51, 239, 512
BtgI	CCRYGG	2 cut(s)	507, 513
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	571
Cfr13I	GGNCC	2 cut(s)	40, 49
Cfr9I	CCCGGG	1 cut(s)	495
CseI	GACGC	2 cut(s)	243, 260
Csp6I	GTAC	2 cut(s)	550, 622
CviAII	CATG	3 cut(s)	408, 508, 514
CviJI	RGCY	9 cut(s)	18, 51, 239, 398, 482, 494, 500, 512, 533
CviKI_1	RGCY	9 cut(s)	18, 51, 239, 398, 482, 494, 500, 512, 533
CviQI	GTAC	2 cut(s)	550, 622
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	4 cut(s)	86, 339, 372, 589
DpnII	GATC	4 cut(s)	84, 337, 370, 587
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
EaeI	YGGCCR	2 cut(s)	237, 510
Eam1104I	CTCTTC	3 cut(s)	124, 177, 440
EarI	CTCTTC	3 cut(s)	124, 177, 440
EciI	GGCGGA	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	507, 513
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	556
EcoT14I	CCWWGG	2 cut(s)	507, 513
EcoT22I	ATGCAT	1 cut(s)	618
ErhI	CCWWGG	2 cut(s)	507, 513
FaeI	CATG	3 cut(s)	411, 511, 517
FaiI	YATR	8 cut(s)	263, 353, 409, 509, 515, 545, 578, 618
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 522, 554
FaqI	GGGAC	2 cut(s)	44, 299
FatI	CATG	3 cut(s)	407, 507, 513
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	625
GluI	GCNGC	1 cut(s)	501
HaeIII	GGCC	3 cut(s)	51, 239, 512
HapII	CCGG	2 cut(s)	268, 496
HgaI	GACGC	2 cut(s)	243, 260
Hin1II	CATG	3 cut(s)	411, 511, 517
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	268, 496
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	276, 385
Hpy188I	TCNGA	2 cut(s)	22, 375
Hpy8I	GTNNAC	2 cut(s)	276, 385
Hpy99I	CGWCG	2 cut(s)	254, 259
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	64, 307
HpyCH4V	TGCA	2 cut(s)	580, 616
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 500, 509
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	3 cut(s)	411, 511, 517
Kzo9I	GATC	4 cut(s)	84, 337, 370, 587
LmnI	GCTCC	2 cut(s)	249, 270
Lsp1109I	GCAGC	1 cut(s)	487
MaeI	CTAG	1 cut(s)	625
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	4 cut(s)	86, 339, 372, 589
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	4 cut(s)	84, 337, 370, 587
MboII	GAAGA	9 cut(s)	35, 138, 141, 179, 194, 332, 335, 457, 530
MfeI	CAATTG	1 cut(s)	280
MflI	RGATCY	2 cut(s)	370, 587
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	512
MluCI	AATT	3 cut(s)	280, 462, 556
MluI	ACGCGT	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	512
Mox20I	TGGCCA	1 cut(s)	512
Mph1103I	ATGCAT	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	512
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	512
MspI	CCGG	2 cut(s)	268, 496
MspR9I	CCNGG	2 cut(s)	496, 497
MunI	CAATTG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	236, 500, 509
NciI	CCSGG	2 cut(s)	496, 497
NcoI	CCATGG	2 cut(s)	507, 513
NdeII	GATC	4 cut(s)	84, 337, 370, 587
NlaIII	CATG	3 cut(s)	411, 511, 517
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	618
NspI	RCATGY	1 cut(s)	411
PciI	ACATGT	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	407
PspPI	GGNCC	2 cut(s)	40, 49
PsuI	RGATCY	2 cut(s)	370, 587
RsaI	GTAC	2 cut(s)	551, 623
RsaNI	GTAC	2 cut(s)	550, 622
RseI	CAYNNNNRTG	1 cut(s)	512
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	4 cut(s)	84, 337, 370, 587
Sau96I	GGNCC	2 cut(s)	40, 49
ScaI	AGTACT	2 cut(s)	551, 623
ScrFI	CCNGG	2 cut(s)	496, 497
SduI	GDGCHC	1 cut(s)	246
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	497
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SrfI	GCCCGGGC	1 cut(s)	497
Sse9I	AATT	3 cut(s)	280, 462, 556
SsiI	CCGC	3 cut(s)	144, 204, 230
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	1 cut(s)	625
StyD4I	CCNGG	2 cut(s)	494, 495
StyI	CCWWGG	2 cut(s)	507, 513
TaaI	ACNGT	2 cut(s)	64, 307
TaqI	TCGA	2 cut(s)	87, 257
TasI	AATT	3 cut(s)	280, 462, 556
TatI	WGTACW	2 cut(s)	549, 621
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	1 cut(s)	48
TspMI	CCCGGG	1 cut(s)	495
TspRI	CASTG	1 cut(s)	310
Van91I	CCANNNNNTGG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	1 cut(s)	411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmaI	CCCGGG	1 cut(s)	495
XspI	CTAG	1 cut(s)	625
ZrmI	AGTACT	2 cut(s)	551, 623
Zsp2I	ATGCAT	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.