Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

13437871 .. 13438896

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATATTCTGGGCGGCTCTGAAGATGGGGACGGATTGGACCTTGAGGGCCAGTTGGTCACGGTCTGTCTGGGAAGCAAAGAGATCGAGGTAGAGGAGGTATTGGTTTCTGGGGTGACGACGCGGTGGCTCTGTTGGGTCGGGAGAGAAACTGGTCGGGTGGGATATGGGGGTTGGGGGACGAAGGTGGGGAGGAGGAAGAAGAGGGTGGGGAGAGCGTGGCGTAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTGGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGTGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCGGTTTGGTCCAACAATCAACTACCCAGCTCTTTCTTTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

6.73

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccII	CGCG	1 cut(s)	124
AciI	CCGC	2 cut(s)	15, 124
AcuI	CTGAAG	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	5 cut(s)	349, 373, 382, 398, 407
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	410, 452
AluI	AGCT	2 cut(s)	410, 452
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	49
AspS9I	GGNCC	3 cut(s)	40, 49, 431
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	40, 431
BccI	CCATC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	233
BfmI	CTRYAG	1 cut(s)	364
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	424
Bme18I	GGWCC	2 cut(s)	40, 431
BmgT120I	GGNCC	3 cut(s)	40, 49, 431
BmrFI	CCNGG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	3 cut(s)	52, 157, 386
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	3 cut(s)	52, 157, 386
BseRI	GAGGAG	2 cut(s)	110, 208
BseYI	CCCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	424
BslFI	GGGAC	2 cut(s)	44, 193
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	44, 193
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	84, 265, 298
BspACI	CCGC	2 cut(s)	15, 124
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	124
BsrI	ACTGG	3 cut(s)	52, 157, 386
BssMI	GATC	3 cut(s)	84, 265, 298
Bst4CI	ACNGT	2 cut(s)	64, 235
Bst6I	CTCTTC	3 cut(s)	197, 368, 393
BstDEI	CTNAG	1 cut(s)	411
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	3 cut(s)	87, 268, 301
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	84, 265, 298
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	231
Cfr13I	GGNCC	3 cut(s)	40, 49, 431
CseI	GACGC	1 cut(s)	130
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	7 cut(s)	18, 51, 130, 326, 410, 422, 452
CviKI_1	RGCY	7 cut(s)	18, 51, 130, 326, 410, 422, 452
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	86, 267, 300
DpnII	GATC	3 cut(s)	84, 265, 298
Eam1104I	CTCTTC	3 cut(s)	197, 368, 393
EarI	CTCTTC	3 cut(s)	197, 368, 393
Eco47I	GGWCC	2 cut(s)	40, 431
Eco57I	CTGAAG	1 cut(s)	42
FaeI	CATG	1 cut(s)	339
FaiI	YATR	3 cut(s)	168, 281, 337
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	2 cut(s)	44, 193
FatI	CATG	1 cut(s)	335
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	16
GsaI	CCCAGC	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	339
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	22, 303
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	2 cut(s)	64, 235
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	84, 265, 298
LpnPI	CCDG	9 cut(s)	56, 65, 96, 138, 312, 352, 399, 437, 462
MaeIII	GTNAC	2 cut(s)	58, 115
MalI	GATC	3 cut(s)	86, 267, 300
MboI	GATC	3 cut(s)	84, 265, 298
MboII	GAAGA	7 cut(s)	35, 211, 214, 260, 263, 385, 410
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	8 cut(s)	40, 82, 88, 91, 186, 189, 198, 334
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	124
NciI	CCSGG	1 cut(s)	424
NdeII	GATC	3 cut(s)	84, 265, 298
NlaIII	CATG	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	58, 115
NspI	RCATGY	1 cut(s)	339
PciI	ACATGT	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	448
PspPI	GGNCC	3 cut(s)	40, 49, 431
PsuI	RGATCY	1 cut(s)	298
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	3 cut(s)	84, 265, 298
Sau96I	GGNCC	3 cut(s)	40, 49, 431
ScrFI	CCNGG	1 cut(s)	424
SetI	ASST	8 cut(s)	45, 93, 102, 189, 295, 371, 412, 454
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	2 cut(s)	40, 431
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	390
SsiI	CCGC	2 cut(s)	15, 124
StyD4I	CCNGG	1 cut(s)	422
TaaI	ACNGT	2 cut(s)	64, 235
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	390
TauI	GCSGC	1 cut(s)	18
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	58, 115
Tsp45I	GTSAC	2 cut(s)	58, 115
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	2 cut(s)	40, 431
XceI	RCATGY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.