Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

31377442 .. 31379032

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGACATTCTGGGCGGCTCTGAAGATGGGGACGGATTGGACCTTGAGGGCCAGTTGGTCACGGTCTGTCTGGGAAGCAAAGAGATCGAGGTAGAGGAGACCCGGAGAGGAGGTGGGCCAAGGAAGGAGGGGTCGGATCGGAGGAGTTGTTGTCGTGGTAGACGACGCGGTGGCTCTGTTGGGTCGGGAGAGAAATTGGTCGGGTGGGATATGGGGGTTGGGGGACGAAGGTGGGGAGGAGAAAGAAGAGGGTGGGGAGAGCGTGGCGTAGGTGAGGGAGGCGGAGGAGGAGGCGAGGGTGAGGAAGACGAGAAGGGCGAAGAGATAAAAGGCAAAGAGAGCGGGAGGAGAGCGGAGGAGAGGGAGGCGGTGGTGGCCATGCTCCACGGCGATTCGATTATGCTCCGGTTGTCAACCAATTGGGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTGGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGTGCTATAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGTTGTTCTTCTTATGGAGTACTCGAATTCAATGACACTTCTCACTATGCAGGTAAGATCTTTATTTAATGGAATATTCAAAATGCATCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

255

Amino Acids

28.19

Weight (kDa)

5.58

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	126 - 178	1.6e-07	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	532
AccBSI	CCGCTC	2 cut(s)	342, 353
AccI	GTMKAC	1 cut(s)	160
AccII	CGCG	1 cut(s)	168
AciI	CCGC	6 cut(s)	15, 168, 282, 342, 353, 368
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	2 cut(s)	375, 648
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	689, 761
AfiI	CCNNNNNNNGG	1 cut(s)	532
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	7 cut(s)	559, 583, 592, 608, 617, 699, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	515, 547
AluBI	AGCT	1 cut(s)	620
AluI	AGCT	1 cut(s)	620
Alw26I	GTCTC	2 cut(s)	92, 443
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	633
AoxI	GGCC	4 cut(s)	49, 116, 375, 648
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	1 cut(s)	694
AspS9I	GGNCC	3 cut(s)	40, 49, 116
AsuC2I	CCSGG	3 cut(s)	103, 634, 635
AsuHPI	GGTGA	2 cut(s)	284, 311
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	40
BalI	TGGCCA	2 cut(s)	377, 650
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcnI	CCSGG	3 cut(s)	103, 634, 635
BcoDI	GTCTC	2 cut(s)	92, 443
BfaI	CTAG	1 cut(s)	763
BfmI	CTRYAG	1 cut(s)	574
BfuAI	ACCTGC	1 cut(s)	709
BglII	AGATCT	2 cut(s)	508, 725
BisI	GCNGC	2 cut(s)	16, 639
BlsI	GCNGC	2 cut(s)	17, 640
BmcAI	AGTACT	2 cut(s)	689, 761
Bme1390I	CCNGG	3 cut(s)	103, 634, 635
Bme18I	GGWCC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	3 cut(s)	40, 49, 116
BmrFI	CCNGG	3 cut(s)	103, 634, 635
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	3 cut(s)	103, 634, 635
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	5 cut(s)	119, 385, 633, 645, 651
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	6 cut(s)	97, 127, 133, 136, 163, 166
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse1I	ACTGG	3 cut(s)	52, 431, 596
BseDI	CCNNGG	5 cut(s)	119, 385, 633, 645, 651
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	3 cut(s)	52, 431, 596
BseRI	GAGGAG	8 cut(s)	110, 123, 157, 252, 300, 303, 361, 371
BseXI	GCAGC	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	51, 118, 377, 650
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	3 cut(s)	103, 406, 634
BslFI	GGGAC	3 cut(s)	44, 237, 437
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	2 cut(s)	92, 443
BsmFI	GGGAC	3 cut(s)	44, 237, 437
BsnI	GGCC	4 cut(s)	51, 118, 377, 650
Bso31I	GGTCTC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	84, 136, 475, 508, 725
Bsp19I	CCATGG	2 cut(s)	645, 651
BspACI	CCGC	6 cut(s)	15, 168, 282, 342, 353, 368
BspANI	GGCC	4 cut(s)	51, 118, 377, 650
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	709
BspPI	GGATC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	92
BsrBI	CCGCTC	2 cut(s)	342, 353
BsrI	ACTGG	3 cut(s)	52, 431, 596
BssECI	CCNNGG	5 cut(s)	119, 385, 633, 645, 651
BssMI	GATC	5 cut(s)	84, 136, 475, 508, 725
BssT1I	CCWWGG	3 cut(s)	119, 645, 651
Bst4CI	ACNGT	2 cut(s)	64, 445
Bst6I	CTCTTC	4 cut(s)	241, 315, 578, 603
BstDEI	CTNAG	1 cut(s)	621
BstDSI	CCRYGG	3 cut(s)	385, 645, 651
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	5 cut(s)	87, 139, 478, 511, 728
BstMAI	GTCTC	2 cut(s)	92, 443
BstMBI	GATC	5 cut(s)	84, 136, 475, 508, 725
BstMWI	GCNNNNNNNGC	4 cut(s)	339, 374, 638, 647
BstNSI	RCATGY	1 cut(s)	549
BstSCI	CCNGG	3 cut(s)	101, 632, 633
BstSFI	CTRYAG	1 cut(s)	574
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	508, 725
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	2 cut(s)	508, 725
BsuRI	GGCC	4 cut(s)	51, 118, 377, 650
BtgI	CCRYGG	3 cut(s)	385, 645, 651
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	1 cut(s)	709
Cfr13I	GGNCC	3 cut(s)	40, 49, 116
Cfr9I	CCCGGG	1 cut(s)	633
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	688, 760
CviAII	CATG	4 cut(s)	379, 546, 646, 652
CviQI	GTAC	2 cut(s)	688, 760
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	5 cut(s)	86, 138, 477, 510, 727
DpnII	GATC	5 cut(s)	84, 136, 475, 508, 725
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	2 cut(s)	375, 648
Eam1104I	CTCTTC	4 cut(s)	241, 315, 578, 603
EarI	CTCTTC	4 cut(s)	241, 315, 578, 603
EciI	GGCGGA	1 cut(s)	297
Eco130I	CCWWGG	3 cut(s)	119, 645, 651
Eco31I	GGTCTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	633
EcoRI	GAATTC	1 cut(s)	694
EcoT14I	CCWWGG	3 cut(s)	119, 645, 651
EcoT22I	ATGCAT	1 cut(s)	756
ErhI	CCWWGG	3 cut(s)	119, 645, 651
FaeI	CATG	4 cut(s)	382, 549, 649, 655
FalI	AAGNNNNNCTT	4 cut(s)	462, 494, 660, 692
FaqI	GGGAC	3 cut(s)	44, 237, 437
FatI	CATG	4 cut(s)	378, 545, 645, 651
FauI	CCCGC	1 cut(s)	335
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	16, 639
Fsp4HI	GCNGC	2 cut(s)	16, 639
FspBI	CTAG	1 cut(s)	763
GluI	GCNGC	2 cut(s)	16, 639
HaeIII	GGCC	4 cut(s)	51, 118, 377, 650
HapII	CCGG	3 cut(s)	103, 406, 634
HgaI	GACGC	1 cut(s)	174
Hin1II	CATG	4 cut(s)	382, 549, 649, 655
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	103, 406, 634
HphI	GGTGA	2 cut(s)	284, 311
Hpy166II	GTNNAC	3 cut(s)	161, 414, 523
Hpy188I	TCNGA	4 cut(s)	22, 136, 141, 513
Hpy188III	TCNNGA	1 cut(s)	186
Hpy8I	GTNNAC	3 cut(s)	161, 414, 523
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	3 cut(s)	118, 222, 307
HpyCH4III	ACNGT	2 cut(s)	64, 445
HpyCH4V	TGCA	2 cut(s)	718, 754
HpyF10VI	GCNNNNNNNGC	4 cut(s)	339, 374, 638, 647
HpyF3I	CTNAG	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	382, 549, 649, 655
Kzo9I	GATC	5 cut(s)	84, 136, 475, 508, 725
LmnI	GCTCC	2 cut(s)	387, 408
LpnPI	CCDG	9 cut(s)	56, 65, 116, 412, 419, 522, 609, 647, 704
Lsp1109I	GCAGC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	763
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	86, 138, 477, 510, 727
MbiI	CCGCTC	2 cut(s)	342, 353
MboI	GATC	5 cut(s)	84, 136, 475, 508, 725
MboII	GAAGA	9 cut(s)	35, 258, 317, 332, 470, 473, 595, 620, 668
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	2 cut(s)	508, 725
MlsI	TGGCCA	2 cut(s)	377, 650
MluCI	AATT	4 cut(s)	194, 418, 600, 694
MluNI	TGGCCA	2 cut(s)	377, 650
MmeI	TCCRAC	1 cut(s)	114
Mox20I	TGGCCA	2 cut(s)	377, 650
Mph1103I	ATGCAT	1 cut(s)	756
MscI	TGGCCA	2 cut(s)	377, 650
MseI	TTAA	1 cut(s)	735
MslI	CAYNNNNRTG	1 cut(s)	650
Msp20I	TGGCCA	2 cut(s)	377, 650
MspI	CCGG	3 cut(s)	103, 406, 634
MspR9I	CCNGG	3 cut(s)	103, 634, 635
MunI	CAATTG	1 cut(s)	418
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	4 cut(s)	339, 374, 638, 647
NciI	CCSGG	3 cut(s)	103, 634, 635
NcoI	CCATGG	2 cut(s)	645, 651
NdeII	GATC	5 cut(s)	84, 136, 475, 508, 725
NlaIII	CATG	4 cut(s)	382, 549, 649, 655
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	756
NspI	RCATGY	1 cut(s)	549
PciI	ACATGT	1 cut(s)	545
PcsI	WCGNNNNNNNCGW	2 cut(s)	160, 315
PfeI	GAWTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	532
PkrI	GCNGC	2 cut(s)	17, 640
PscI	ACATGT	1 cut(s)	545
PspPI	GGNCC	3 cut(s)	40, 49, 116
PsuI	RGATCY	2 cut(s)	508, 725
RsaI	GTAC	2 cut(s)	689, 761
RsaNI	GTAC	2 cut(s)	688, 760
RseI	CAYNNNNRTG	1 cut(s)	650
SaqAI	TTAA	1 cut(s)	735
SatI	GCNGC	2 cut(s)	16, 639
Sau3AI	GATC	5 cut(s)	84, 136, 475, 508, 725
Sau96I	GGNCC	3 cut(s)	40, 49, 116
ScaI	AGTACT	2 cut(s)	689, 761
ScrFI	CCNGG	3 cut(s)	103, 634, 635
SetI	ASST	9 cut(s)	45, 93, 115, 233, 274, 505, 581, 622, 723
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	1 cut(s)	40
SmaI	CCCGGG	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SrfI	GCCCGGGC	1 cut(s)	635
Sse9I	AATT	4 cut(s)	194, 418, 600, 694
SsiI	CCGC	6 cut(s)	15, 168, 282, 342, 353, 368
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	1 cut(s)	763
StyD4I	CCNGG	3 cut(s)	101, 632, 633
StyI	CCWWGG	3 cut(s)	119, 645, 651
TaaI	ACNGT	2 cut(s)	64, 445
TaqI	TCGA	3 cut(s)	87, 395, 692
TasI	AATT	4 cut(s)	194, 418, 600, 694
TatI	WGTACW	2 cut(s)	687, 759
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	735
Tru9I	TTAA	1 cut(s)	735
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	519
TspGWI	ACGGA	1 cut(s)	48
TspMI	CCCGGG	1 cut(s)	633
TspRI	CASTG	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	532
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	1 cut(s)	549
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmaI	CCCGGG	1 cut(s)	633
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	763
ZrmI	AGTACT	2 cut(s)	689, 761
Zsp2I	ATGCAT	1 cut(s)	756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.