Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

55613655 .. 55614780

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG373900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCTCCTGTTGTTAACCAATTGGGACTGGTTCATCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTAGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGGGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCGGGCGATGGGCTACGGACATCTTTTTGTAGAAGTACTTCTTTTTGCAGTCATTGTTTTCTTATTCTCCCAGAAAAGTTACAAGCCCCCTAAGAAGCCTTTAACAGAGAAGAACAATACACTCTGCTTGCGCACCACCTTTAATCCATTGAACTGCTTTTTATATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

134

Amino Acids

15.64

Weight (kDa)

8.44

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	3 - 45	7.1e-07	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	365
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	6 cut(s)	160, 184, 193, 209, 218, 385
AluBI	AGCT	2 cut(s)	137, 221
AluI	AGCT	2 cut(s)	137, 221
Alw26I	GTCTC	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	366
AsuC2I	CCSGG	2 cut(s)	235, 236
AvaI	CYCGRG	1 cut(s)	234
BarI	GAAGNNNNNNTAC	2 cut(s)	255, 287
BccI	CCATC	1 cut(s)	235
BcnI	CCSGG	2 cut(s)	235, 236
BcoDI	GTCTC	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	175
BglII	AGATCT	1 cut(s)	109
BmcAI	AGTACT	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	235, 236
BmeT110I	CYCGRG	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	235, 236
BpuMI	CCSGG	2 cut(s)	235, 236
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	2 cut(s)	32, 197
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	2 cut(s)	32, 197
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	76, 109
BspCNI	CTCAG	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	32, 197
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	76, 109
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	179, 204
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	222, 324
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	79, 112
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	76, 109
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	233, 234
BstSFI	CTRYAG	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	366
Cfr9I	CCCGGG	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	7 cut(s)	137, 174, 221, 233, 246, 319, 331
CviKI_1	RGCY	7 cut(s)	137, 174, 221, 233, 246, 319, 331
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	2 cut(s)	222, 324
DpnI	GATC	2 cut(s)	78, 111
DpnII	GATC	2 cut(s)	76, 109
Eam1104I	CTCTTC	2 cut(s)	179, 204
EarI	CTCTTC	2 cut(s)	179, 204
Eco88I	CYCGRG	1 cut(s)	234
FaeI	CATG	1 cut(s)	150
FaiI	YATR	3 cut(s)	92, 148, 397
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 258, 290
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	1 cut(s)	146
FspI	TGCGCA	1 cut(s)	365
GlaI	GCGC	1 cut(s)	365
HapII	CCGG	1 cut(s)	235
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HpaI	GTTAAC	1 cut(s)	15
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	15, 124
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	2 cut(s)	15, 124
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	222, 324
Hsp92II	CATG	1 cut(s)	150
HspAI	GCGC	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	15
Kzo9I	GATC	2 cut(s)	76, 109
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	13, 20, 123, 163, 210, 248, 317
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	78, 111
MboI	GATC	2 cut(s)	76, 109
MboII	GAAGA	5 cut(s)	71, 74, 196, 221, 355
MfeI	CAATTG	1 cut(s)	19
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	2 cut(s)	19, 201
MnlI	CCTC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	3 cut(s)	14, 335, 375
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	235, 236
MunI	CAATTG	1 cut(s)	19
NciI	CCSGG	2 cut(s)	235, 236
NdeII	GATC	2 cut(s)	76, 109
NlaIII	CATG	1 cut(s)	150
NsbI	TGCGCA	1 cut(s)	365
NspI	RCATGY	1 cut(s)	150
PciI	ACATGT	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	270
PscI	ACATGT	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	14, 335, 375
Sau3AI	GATC	2 cut(s)	76, 109
ScaI	AGTACT	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	235, 236
SetI	ASST	5 cut(s)	106, 139, 182, 223, 374
SfcI	CTRYAG	1 cut(s)	175
SmaI	CCCGGG	1 cut(s)	236
SrfI	GCCCGGGC	1 cut(s)	236
Sse9I	AATT	2 cut(s)	19, 201
StyD4I	CCNGG	2 cut(s)	233, 234
TaaI	ACNGT	1 cut(s)	46
TasI	AATT	2 cut(s)	19, 201
TatI	WGTACW	1 cut(s)	268
Tru1I	TTAA	3 cut(s)	14, 335, 375
Tru9I	TTAA	3 cut(s)	14, 335, 375
TscAI	CASTG	1 cut(s)	49
TspDTI	ATGAA	2 cut(s)	22, 120
TspGWI	ACGGA	1 cut(s)	264
TspMI	CCCGGG	1 cut(s)	234
TspRI	CASTG	1 cut(s)	49
XceI	RCATGY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XmaI	CCCGGG	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	270
ZrmI	AGTACT	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.