Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

56422231 .. 56427793

Gene Structure 5563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGACATTCTGGGCGGCTCTGAAGATGGGGACGAATTAGACCTTGAGGACCAGTTGGTCACGGTCTGTCTGGGAAGCAAAGAGATCGAGGTGGAGGAGGTATTGGTTTCTGGGGTGGGAGAGTGTGGCGTAGGTGAGGGAAGCGGAGGAGGAGGCGAGGGTGAGGAAGACGAGAAGGGCGAAGAGGTAAAAGGCAAAGAGAGCGAAGCGGAGGAGAGGGAGGCGGTGGTGGCCGTGCTCCACGGCGCGTCGATTATGCTCCGGTTGTCAACCAATTGGGATTGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTTAGCCCGTTTATTTGCTGCATTGTCAAATAGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGCTGTTCTTCTTATGGAGTACTCGAATTCAATGACACTTCTCACTATGCAGGAGGAAGGCTGGCCTCTGGGTTTGCAGCCAATACATGTGAGAGTTGGGCTGGCTGCTCGAGACCGTGAAGTTTCTGGATCGGTGTCATTCAATACTTTACTAACTGGCTCTCCGACCTCCTCCACAGACTCTTCTTCGGATCTGGATATAGAGGTCAGTGCTGTAAATTACAGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.38

Weight (kDa)

4.28

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	56
AccII	CGCG	1 cut(s)	248
AciI	CCGC	4 cut(s)	15, 144, 209, 224
AclWI	GGATC	2 cut(s)	535, 597
AcoI	YGGCCR	2 cut(s)	231, 378
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	6 cut(s)	289, 298, 314, 323, 429, 541
AluBI	AGCT	2 cut(s)	326, 401
AluI	AGCT	2 cut(s)	326, 401
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	535, 597
Ama87I	CYCGRG	1 cut(s)	507
AoxI	GGCC	3 cut(s)	231, 378, 461
ApeKI	GCWGC	4 cut(s)	350, 368, 475, 503
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	146, 173
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	337, 355, 487, 490
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	218, 259
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BcoDI	GTCTC	1 cut(s)	504
BisI	GCNGC	5 cut(s)	16, 351, 369, 476, 504
BlsI	GCNGC	5 cut(s)	17, 352, 370, 477, 505
BmcAI	AGTACT	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	241, 375, 381
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bse1I	ACTGG	3 cut(s)	52, 302, 559
BseDI	CCNNGG	3 cut(s)	241, 375, 381
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	3 cut(s)	52, 302, 559
BseRI	GAGGAG	5 cut(s)	110, 162, 165, 227, 559
BseXI	GCAGC	4 cut(s)	337, 355, 487, 490
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	3 cut(s)	233, 380, 463
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	44
BsnI	GGCC	3 cut(s)	233, 380, 463
Bso31I	GGTCTC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	507
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	84, 527, 589
Bsp19I	CCATGG	2 cut(s)	375, 381
BspACI	CCGC	4 cut(s)	15, 144, 209, 224
BspANI	GGCC	3 cut(s)	233, 380, 463
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	248
BspPI	GGATC	2 cut(s)	535, 597
BspTNI	GGTCTC	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	52, 302, 559
BssECI	CCNNGG	3 cut(s)	241, 375, 381
BssMI	GATC	3 cut(s)	84, 527, 589
BssT1I	CCWWGG	2 cut(s)	375, 381
Bst4CI	ACNGT	2 cut(s)	64, 515
Bst6I	CTCTTC	4 cut(s)	177, 284, 309, 586
BstC8I	GCNNGC	2 cut(s)	461, 501
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	3 cut(s)	241, 375, 381
BstFNI	CGCG	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	3 cut(s)	87, 530, 592
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	3 cut(s)	84, 527, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 230, 377
BstNSI	RCATGY	1 cut(s)	488
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	4 cut(s)	337, 355, 487, 490
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	589
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	233, 380, 463
BtgI	CCRYGG	3 cut(s)	241, 375, 381
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	461, 501
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	3 cut(s)	376, 382, 485
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	3 cut(s)	86, 529, 591
DpnII	GATC	3 cut(s)	84, 527, 589
DrdI	GACNNNNNNGTC	1 cut(s)	56
DseDI	GACNNNNNNGTC	1 cut(s)	56
EaeI	YGGCCR	2 cut(s)	231, 378
Eam1104I	CTCTTC	4 cut(s)	177, 284, 309, 586
EarI	CTCTTC	4 cut(s)	177, 284, 309, 586
Eco130I	CCWWGG	2 cut(s)	375, 381
Eco31I	GGTCTC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	507
EcoRI	GAATTC	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	375, 381
ErhI	CCWWGG	2 cut(s)	375, 381
FaeI	CATG	3 cut(s)	379, 385, 488
FaiI	YATR	7 cut(s)	257, 377, 383, 413, 446, 486, 599
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	3 cut(s)	375, 381, 484
Fnu4HI	GCNGC	5 cut(s)	16, 351, 369, 476, 504
Fsp4HI	GCNGC	5 cut(s)	16, 351, 369, 476, 504
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	5 cut(s)	16, 351, 369, 476, 504
HaeIII	GGCC	3 cut(s)	233, 380, 463
HapII	CCGG	1 cut(s)	262
HgaI	GACGC	1 cut(s)	237
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	3 cut(s)	379, 385, 488
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	1 cut(s)	578
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	2 cut(s)	146, 173
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	3 cut(s)	22, 564, 589
Hpy188III	TCNNGA	3 cut(s)	509, 525, 593
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	169, 449
HpyCH4III	ACNGT	2 cut(s)	64, 515
HpyCH4V	TGCA	3 cut(s)	353, 448, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 230, 377
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	379, 385, 488
HspAI	GCGC	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	84, 527, 589
LmnI	GCTCC	2 cut(s)	243, 264
Lsp1109I	GCAGC	4 cut(s)	337, 355, 487, 490
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	86, 529, 591
MboI	GATC	3 cut(s)	84, 527, 589
MboII	GAAGA	8 cut(s)	35, 179, 194, 301, 326, 398, 573, 576
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	1 cut(s)	240
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	5 cut(s)	35, 274, 306, 424, 616
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	1 cut(s)	587
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
MseI	TTAA	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspI	CCGG	1 cut(s)	262
MunI	CAATTG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	3 cut(s)	201, 230, 377
NcoI	CCATGG	2 cut(s)	375, 381
NdeII	GATC	3 cut(s)	84, 527, 589
NlaIII	CATG	3 cut(s)	379, 385, 488
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	488
PaeR7I	CTCGAG	1 cut(s)	507
PciI	ACATGT	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PkrI	GCNGC	5 cut(s)	17, 352, 370, 477, 505
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PscI	ACATGT	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	5 cut(s)	16, 351, 369, 476, 504
Sau3AI	GATC	3 cut(s)	84, 527, 589
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	49
SlaI	CTCGAG	1 cut(s)	507
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	2 cut(s)	44, 507
SmoI	CTYRAG	2 cut(s)	44, 507
Sse9I	AATT	5 cut(s)	35, 274, 306, 424, 616
SsiI	CCGC	4 cut(s)	15, 144, 209, 224
StyI	CCWWGG	2 cut(s)	375, 381
TaaI	ACNGT	2 cut(s)	64, 515
TaqI	TCGA	4 cut(s)	87, 251, 422, 508
TasI	AATT	5 cut(s)	35, 274, 306, 424, 616
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	4 cut(s)	350, 368, 475, 503
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	1 cut(s)	424
XceI	RCATGY	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	507
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.