Rh5DG409000

Sterol 3-beta-glucosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003472
Physical Location & Seq
Forward (+)
64760373 .. 64762481
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG409000.1

Sequence Viewer

Length: 288 bp
ATGGCTTTCGGTACCAAAGGCGATGTCTATCCAATTGCTAGCTTACGTTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCGCTGCAGAAAAAGTTGTTTTCTGGAGAACATACAAAAGAATGTCTTTCAGTAGTTGAAACGATATTTGGATCAGGCCCAAGCATGGATGGTGATTTCATTGTGATAAATTTCTTTGCTCTGATATCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.27

Weight (kDa)

6.02

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 11
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 262
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 212
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 42, 284
AluI AGCT 2 cut(s) 42, 284
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 137
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
Asp718I GGTACC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 2 cut(s) 84, 257
AsuNHI GCTAGC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 144
BccI CCATC 2 cut(s) 120, 236
BfaI CTAG 1 cut(s) 39
BfmI CTRYAG 3 cut(s) 129, 138, 158
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 13
BmtI GCTAGC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 198
BsaBI GATNNNNATC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 27
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 51
BseXI GCAGC 1 cut(s) 144
BshFI GGCC 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 11
BslI CCNNNNNNNGG 1 cut(s) 238
BsnI GGCC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 224
BspANI GGCC 1 cut(s) 231
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 13
BspMAI CTGCAG 1 cut(s) 162
BspOI GCTAGC 1 cut(s) 42
BspPI GGATC 1 cut(s) 232
BspT107I GGYRCC 1 cut(s) 11
BssMI GATC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstSFI CTRYAG 3 cut(s) 129, 138, 158
BstV1I GCAGC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 122, 238
CviJI RGCY 6 cut(s) 5, 42, 59, 135, 231, 284
CviKI_1 RGCY 6 cut(s) 5, 42, 59, 135, 231, 284
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 1 cut(s) 60
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 279
EcoRV GATATC 1 cut(s) 279
FaeI CATG 2 cut(s) 125, 241
FaiI YATR 3 cut(s) 123, 186, 239
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 2 cut(s) 121, 237
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 231
Hin1II CATG 2 cut(s) 125, 241
HphI GGTGA 2 cut(s) 84, 257
Hpy188I TCNGA 2 cut(s) 117, 276
Hpy188III TCNNGA 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 46
Hsp92II CATG 2 cut(s) 125, 241
KpnI GGTACC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 224
LpnPI CCDG 4 cut(s) 111, 117, 162, 213
Lsp1109I GCAGC 1 cut(s) 144
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 50
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 71, 76
MfeI CAATTG 1 cut(s) 33
MluCI AATT 3 cut(s) 33, 84, 262
MnlI CCTC 1 cut(s) 159
MseI TTAA 1 cut(s) 286
MunI CAATTG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 1 cut(s) 224
NheI GCTAGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 125, 241
NlaIV GGNNCC 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 50
PkrI GCNGC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 162
PstNI CAGNNNCTG 1 cut(s) 137
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 286
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 224
Sau96I GGNCC 1 cut(s) 230
SetI ASST 4 cut(s) 44, 49, 100, 286
SfcI CTRYAG 3 cut(s) 129, 138, 158
SgeI CNNG 9 cut(s) 51, 67, 110, 134, 144, 189, 240, 246, 250
Sse9I AATT 3 cut(s) 33, 84, 262
SspMI CTAG 1 cut(s) 39
TaiI ACGT 1 cut(s) 49
TasI AATT 3 cut(s) 33, 84, 262
Tru1I TTAA 1 cut(s) 286
Tru9I TTAA 1 cut(s) 286
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 78, 241
XapI RAATTY 1 cut(s) 262
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.