Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

58938228 .. 58940497

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030281

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCGGTGGCTCTGTCGAGTCGGGAGAGAAACTGGTCGGGTGGGATATGGGGGTTGGGGGACGAAGGTGGGGAGGAGGAAGAAGAGGTGGGGAGAGTGTGGCGTAGGTGAGGGAGGCGGAGGAGGAGGCGAGGGTGAGGAAGACGAGAAGGGCGAAGAGGTAAAAGGCAAAGAGAGCGGGAGGAGAGCGGAGGAGAGGGAGGCGGTGGTGGCCGTGCTCCACGGCGCGTCGATTATGCTCTGGTTGTCAACCAATTGGGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGAAGCATGTGAGGGTTTCAATGTTTTGTGGTGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCCGATTTACATTATTGCAGTGATACTAGCTGAGGAGTTTCACATCAGTTGCTTAAGGAATTTTGTTTTCTTGCATCTTACAGCAGAAACTCCCAAGGATACGTGGTTTTGTTGTGATGATAACAGTAGGATTCATGAGGCACTGATGAATCTTCATATGATAAAGGAGTGCTTTGACCCTATTGTTGCACATTTGGTTCTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

202

Amino Acids

22.85

Weight (kDa)

5.59

Isoelectric Point (pI)

50.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AccBSI	CCGCTC	2 cut(s)	177, 188
AccII	CGCG	1 cut(s)	227
AciI	CCGC	5 cut(s)	4, 117, 177, 188, 203
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	457
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	5 cut(s)	325, 349, 358, 374, 383
AluBI	AGCT	2 cut(s)	386, 428
AluI	AGCT	2 cut(s)	386, 428
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	119, 146
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	429
BceAI	ACGGC	2 cut(s)	197, 238
BciVI	GTATCC	1 cut(s)	490
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	1 cut(s)	340
BfrI	CTTAAG	1 cut(s)	451
BfuI	GTATCC	1 cut(s)	490
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	220, 492
Bse1I	ACTGG	3 cut(s)	37, 266, 362
BseDI	CCNNGG	2 cut(s)	220, 492
BseMII	CTCAG	2 cut(s)	401, 420
BseNI	ACTGG	3 cut(s)	37, 266, 362
BseRI	GAGGAG	6 cut(s)	88, 135, 138, 196, 206, 446
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	73, 272
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	73, 272
BsnI	GGCC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	4, 117, 177, 188, 203
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	400, 421
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	451
BsrBI	CCGCTC	2 cut(s)	177, 188
BsrI	ACTGG	3 cut(s)	37, 266, 362
BssECI	CCNNGG	2 cut(s)	220, 492
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	280, 524
Bst6I	CTCTTC	4 cut(s)	77, 150, 344, 369
BstAFI	CTTAAG	1 cut(s)	451
BstBAI	YACGTR	1 cut(s)	501
BstDEI	CTNAG	2 cut(s)	387, 429
BstDSI	CCRYGG	1 cut(s)	220
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	227
BstMAI	GTCTC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 209
BstNSI	RCATGY	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	490
BsuRI	GGCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	220
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	3 cut(s)	276, 423, 539
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	227
CseI	GACGC	1 cut(s)	216
CviAII	CATG	2 cut(s)	312, 533
CviJI	RGCY	5 cut(s)	10, 212, 386, 398, 428
CviKI_1	RGCY	5 cut(s)	10, 212, 386, 398, 428
DdeI	CTNAG	2 cut(s)	387, 429
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	210
Eam1104I	CTCTTC	4 cut(s)	77, 150, 344, 369
EarI	CTCTTC	4 cut(s)	77, 150, 344, 369
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	2 cut(s)	315, 536
FaiI	YATR	6 cut(s)	48, 236, 313, 534, 555, 557
FalI	AAGNNNNNCTT	2 cut(s)	554, 586
FaqI	GGGAC	2 cut(s)	73, 272
FatI	CATG	2 cut(s)	311, 532
FauI	CCCGC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	555
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	212
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	315, 536
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	18, 529, 547
HphI	GGTGA	2 cut(s)	119, 146
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	600
Hpy188III	TCNNGA	2 cut(s)	22, 533
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	2 cut(s)	58, 142
HpyCH4III	ACNGT	2 cut(s)	280, 524
HpyCH4IV	ACGT	1 cut(s)	500
HpyCH4V	TGCA	3 cut(s)	416, 472, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 209
HpyF3I	CTNAG	2 cut(s)	387, 429
HpySE526I	ACGT	1 cut(s)	500
Hsp92II	CATG	2 cut(s)	315, 536
HspAI	GCGC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	5 cut(s)	18, 226, 247, 328, 375
LweI	GCATC	1 cut(s)	481
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	500
MbiI	CCGCTC	2 cut(s)	177, 188
MboII	GAAGA	7 cut(s)	91, 94, 152, 167, 361, 386, 542
MfeI	CAATTG	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	253, 366, 457
MlyI	GAGTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	452
MspCI	CTTAAG	1 cut(s)	451
MunI	CAATTG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	174, 209
NdeI	CATATG	1 cut(s)	555
NlaIII	CATG	2 cut(s)	315, 536
NspI	RCATGY	1 cut(s)	315
PagI	TCATGA	1 cut(s)	532
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	529, 547
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	452
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	69, 89, 109, 162, 347, 388, 430, 503
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
Sse9I	AATT	3 cut(s)	253, 366, 457
SsiI	CCGC	5 cut(s)	4, 117, 177, 188, 203
SspMI	CTAG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	280, 524
TaiI	ACGT	1 cut(s)	503
TaqI	TCGA	2 cut(s)	16, 230
TasI	AATT	3 cut(s)	253, 366, 457
TfiI	GAWTC	2 cut(s)	529, 547
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	283, 423, 546
TspDTI	ATGAA	3 cut(s)	521, 542, 560
TspRI	CASTG	3 cut(s)	283, 423, 546
Vha464I	CTTAAG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	315
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.