Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

17511656 .. 17518565

Gene Structure 6910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00231950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACTATGGAGAAGAACAAGAACACGGACCAGCGGGAACAACAAATCCGAATATTAGATATGCTTGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGCTGTTCTTATGGAGTACTCGCATTCAATGACACTTCTCACTATGCAGCCTCTTGGAGAGCATGGGTGGGTGGCCTCTTGGCAAGATACCAGCCGACCTCCACCATGGCTAGGTAGCTCGGGTGTCGGTCTATCGGATGCATATCGTAGGTGGGACCTACCATGTCATGAGGATCCCGTAAGAGGTCGTTGCTTATGCTTGGCGGTATGTGATATAGGCGGTATGTACAAGTCCCCCAAGTCCCCGAGTAAGAGGCGCTTCTTGGTTGGGGAGTTTAAATGTGATGCCGCCAAGTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

134

Amino Acids

15.0

Weight (kDa)

6.41

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	35, 305, 321, 390
AclWI	GGATC	2 cut(s)	269, 282
AcoI	YGGCCR	1 cut(s)	81
AfaI	GTAC	2 cut(s)	119, 329
AfiI	CCNNNNNNNGG	2 cut(s)	212, 284
AgsI	TTSAA	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	2 cut(s)	104, 219
AluI	AGCT	2 cut(s)	104, 219
AlwI	GGATC	2 cut(s)	269, 282
Ama87I	CYCGRG	2 cut(s)	220, 346
AoxI	GGCC	2 cut(s)	81, 174
ApeKI	GCWGC	2 cut(s)	71, 148
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	29, 256
AvaI	CYCGRG	2 cut(s)	220, 346
AvaII	GGWCC	2 cut(s)	29, 256
BalI	TGGCCA	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	274
BbvI	GCAGC	2 cut(s)	58, 160
BfaI	CTAG	1 cut(s)	212
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	3 cut(s)	72, 149, 390
BlsI	GCNGC	3 cut(s)	73, 150, 391
BmcAI	AGTACT	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	29, 256
BmeT110I	CYCGRG	2 cut(s)	220, 346
BmgT120I	GGNCC	2 cut(s)	29, 256
BmiI	GGNNCC	2 cut(s)	257, 276
BmsI	GCATC	2 cut(s)	229, 376
BsaBI	GATNNNNATC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	78, 84, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 284
Bse8I	GATNNNNATC	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	78, 84, 206
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	212, 284
BseXI	GCAGC	2 cut(s)	58, 160
BshFI	GGCC	2 cut(s)	83, 176
BsiHKCI	CYCGRG	2 cut(s)	220, 346
BslFI	GGGAC	3 cut(s)	269, 319, 328
BslI	CCNNNNNNNGG	2 cut(s)	212, 284
BsmFI	GGGAC	3 cut(s)	269, 319, 328
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	83, 176
BsoBI	CYCGRG	2 cut(s)	220, 346
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	274
Bsp19I	CCATGG	3 cut(s)	78, 84, 206
BspACI	CCGC	4 cut(s)	35, 305, 321, 390
BspANI	GGCC	2 cut(s)	83, 176
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	257, 276
BspPI	GGATC	2 cut(s)	269, 282
BsrGI	TGTACA	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	78, 84, 206
BssMI	GATC	1 cut(s)	274
BssT1I	CCWWGG	3 cut(s)	78, 84, 206
BstAUI	TGTACA	1 cut(s)	327
BstDSI	CCRYGG	3 cut(s)	78, 84, 206
BstF5I	GGATG	1 cut(s)	244
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 80
BstV1I	GCAGC	2 cut(s)	58, 160
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	83, 176
BtgI	CCRYGG	3 cut(s)	78, 84, 206
BtsCI	GGATG	1 cut(s)	244
CciI	TCATGA	1 cut(s)	268
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	2 cut(s)	29, 256
Csp6I	GTAC	2 cut(s)	118, 328
CviAII	CATG	6 cut(s)	79, 85, 164, 207, 264, 269
CviJI	RGCY	8 cut(s)	71, 83, 104, 151, 176, 195, 211, 219
CviKI_1	RGCY	8 cut(s)	71, 83, 104, 151, 176, 195, 211, 219
CviQI	GTAC	2 cut(s)	118, 328
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraI	TTTAAA	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	78, 84, 206
Eco47I	GGWCC	2 cut(s)	29, 256
Eco88I	CYCGRG	2 cut(s)	220, 346
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	78, 84, 206
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	3 cut(s)	78, 84, 206
FaeI	CATG	6 cut(s)	82, 88, 167, 210, 267, 272
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 344, 376
FaqI	GGGAC	3 cut(s)	269, 319, 328
FatI	CATG	6 cut(s)	78, 84, 163, 206, 263, 268
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	72, 149, 390
FokI	GGATG	1 cut(s)	251
Fsp4HI	GCNGC	3 cut(s)	72, 149, 390
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	72, 149, 390
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	83, 176
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	6 cut(s)	82, 88, 167, 210, 267, 272
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
Hpy188I	TCNGA	2 cut(s)	51, 238
Hpy188III	TCNNGA	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	148, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 80
Hsp92II	CATG	6 cut(s)	82, 88, 167, 210, 267, 272
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	274
LpnPI	CCDG	2 cut(s)	45, 205
Lsp1109I	GCAGC	2 cut(s)	58, 160
LweI	GCATC	2 cut(s)	229, 376
MaeI	CTAG	1 cut(s)	212
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MboII	GAAGA	1 cut(s)	26
MflI	RGATCY	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	83
MluNI	TGGCCA	1 cut(s)	83
MnlI	CCTC	6 cut(s)	162, 187, 210, 265, 278, 348
Mox20I	TGGCCA	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	71, 80
NcoI	CCATGG	3 cut(s)	78, 84, 206
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	6 cut(s)	82, 88, 167, 210, 267, 272
NlaIV	GGNNCC	2 cut(s)	257, 276
NsiI	ATGCAT	1 cut(s)	244
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	73, 150, 391
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	257, 276
PspPI	GGNCC	2 cut(s)	29, 256
PspPPI	RGGWCCY	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	119, 329
RsaNI	GTAC	2 cut(s)	118, 328
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	3 cut(s)	72, 149, 390
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	2 cut(s)	29, 256
ScaI	AGTACT	1 cut(s)	119
SetI	ASST	7 cut(s)	106, 202, 217, 221, 254, 261, 289
SfaNI	GCATC	2 cut(s)	229, 376
SinI	GGWCC	2 cut(s)	29, 256
SmiMI	CAYNNNNRTG	1 cut(s)	83
SsiI	CCGC	4 cut(s)	35, 305, 321, 390
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	212
StyI	CCWWGG	3 cut(s)	78, 84, 206
TaqII	GACCGA	1 cut(s)	218
TatI	WGTACW	2 cut(s)	117, 327
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseI	GCWGC	2 cut(s)	71, 148
TspGWI	ACGGA	1 cut(s)	42
VpaK11BI	GGWCC	2 cut(s)	29, 256
XspI	CTAG	1 cut(s)	212
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.