Rorug05G0579900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003472
Physical Location & Seq
Reverse (-)
77680345 .. 77683859
3515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0579900.1

Sequence Viewer

Length: 1350 bp
ATGCAGACAAGCTCGAGTTTGATTGAAGGGAGGTGGCAATTGATGTTTACTACAAGACCTGGAACTGCCTCTCCAATCCAAAGAACATTTGTGGGGGTGGACTTCTTTAGTGTATTTCAGGAGGTTTATCTTCAGACAAAGGATCAGCGTGTATCTAATATTGTAAAGTTCTCTGATGCGATAGGTGAGCTAAAAGTAGAGGCAGAAGCATCAATTAAAGATGGAAAGCGGATACTGTTTCGATTCGACAAAGCAGCTTTTTCGTTTAAATTTTTACCACTTATGGTTCCATATCCAGTGCCATTCAGACTTCTTGGAGATGAGGCAAAGGGTTGGTTGGATACCACATATCTGTCCCAATCTGGCAATCTTCGTATCTCAAGAGGAAATAAGGGAACAACATTTGTTCTGCAAAAGAAAGCTGAACCTAGGCAAAGACTATTGTCAATCATCTCTACTGGTACAGGAGTTAAAGAGGCAATTGAGGAGTTTATCTCCTTAAATCAAAATATAGGTGAATTGGAACTCCAAGAGGGAGAATGGAAAATGGTTTGGAGTTCACAGGAAGAGACGGATAGTTGGCTCGAGAATGCTGCCAATGGTCTTATGGGCACACAAATTGTCAAGGGAAATGAACAAATAAAGTTTGTGGTTGACGCTTTCCTTGGGCTCAAGTTCTCCATATCTGGAACCCTTGTCAAATCTGGCTCCCGCACTTATGATGTTACAATGGATGATGCAGCCATCATTGGCGGTGGCTTTGGATATCCCCTAGAAGAGCTAGGAAGCAAGTTTGAACTAGAATTGCTACACCGAAGATCTAGTTGGAGATGGCCCGAAATTTTACTTCCAGAGTGGTTCACTTGCCGCAGGGTTGTCGATAAGAAAGGACGGCAAGTATGTGAATTTAGAATTGATTTTCCTGGAAATTTCAAATGGGAGGACAAAGGATTAGCTTTCTGTGCTCAAACTGTTGTTTCTGGGCCTACGAGATTATATTTCACAATCTACATTAACGGTGTATGCATCATTGAAGCATCCCAAAAGACGGAAGACTTCATGTGGAGGAGATTGTCAGGTGGTTCTTTGTGGTTGTACTATATGCCATTTGATACTATAATAAAACGGCTGAGTGAGAGTGGGTCACCGCCACCTTCCGTGCGTCTGGTTAAGTTCAAAATTGAAGGGAGCCTGGTGCGAAGCTGCAGAGTCCACGTAGTAATGCCAGAGGATGAAGGCCAATTTGTAAATGATTGTCAAAGGATTCCACCGTTTTCCAGAAGAGAGCTGAAGATCGATGCTGAAGAGACTGACTCCTACTACGATGCTGAAGATCGACTAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

449

Amino Acids

51.19

Weight (kDa)

6.03

Isoelectric Point (pI)

51.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 4 - 137 3.9e-31 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 229, 712, 753, 868, 1148
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 4 cut(s) 269, 840, 905, 928
AcuI CTGAAG 4 cut(s) 116, 1310, 1323, 1350
AfaI GTAC 2 cut(s) 463, 1097
AfiI CCNNNNNNNGG 1 cut(s) 1048
AgsI TTSAA 6 cut(s) 26, 797, 934, 1034, 1177, 1184
AjnI CCWGG 3 cut(s) 58, 922, 1191
AjuI GAANNNNNNNTTGG 2 cut(s) 808, 840
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 8 cut(s) 12, 190, 257, 422, 781, 956, 1203, 1288
AluI AGCT 8 cut(s) 12, 190, 257, 422, 781, 956, 1203, 1288
Alw21I GWGCWC 1 cut(s) 967
Alw26I GTCTC 2 cut(s) 563, 1301
AlwI GGATC 1 cut(s) 150
Ama87I CYCGRG 2 cut(s) 13, 584
AoxI GGCC 3 cut(s) 833, 983, 1237
ApeKI GCWGC 4 cut(s) 254, 593, 740, 1203
ApoI RAATTY 4 cut(s) 269, 840, 905, 928
ArsI GACNNNNNNTTYG 1 cut(s) 1329
AspA2I CCTAGG 1 cut(s) 428
AspS9I GGNCC 2 cut(s) 834, 983
AsuHPI GGTGA 3 cut(s) 197, 527, 1137
AvaI CYCGRG 2 cut(s) 13, 584
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanII GRGCYC 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 1059
Bbv12I GWGCWC 1 cut(s) 967
BbvI GCAGC 4 cut(s) 266, 580, 752, 1190
BccI CCATC 3 cut(s) 215, 752, 825
BceAI ACGGC 2 cut(s) 908, 1142
BcgI CGANNNNNNTGC 6 cut(s) 243, 277, 575, 609, 859, 893
BciT130I CCWGG 3 cut(s) 60, 924, 1193
BciVI GTATCC 2 cut(s) 225, 334
BcoDI GTCTC 2 cut(s) 563, 1301
BfaI CTAG 5 cut(s) 429, 773, 782, 800, 822
BfmI CTRYAG 1 cut(s) 1204
BfuI GTATCC 2 cut(s) 225, 334
BglII AGATCT 1 cut(s) 818
BisI GCNGC 5 cut(s) 255, 594, 741, 868, 1204
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 5 cut(s) 256, 595, 742, 869, 1205
Bme1390I CCNGG 3 cut(s) 60, 924, 1193
BmeT110I CYCGRG 2 cut(s) 13, 584
BmgT120I GGNCC 2 cut(s) 834, 983
BmiI GGNNCC 4 cut(s) 288, 691, 709, 1190
BmrFI CCNGG 3 cut(s) 60, 924, 1193
BmsI GCATC 7 cut(s) 166, 218, 727, 1035, 1046, 1288, 1315
BoxI GACNNNNGTC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 1059
BplI GAGNNNNNCTC 4 cut(s) 479, 511, 1298, 1330
BpuEI CTTGAG 2 cut(s) 364, 656
Bsa29I ATCGAT 1 cut(s) 1296
BsaAI YACGTR 1 cut(s) 1216
BsaJI CCNNGG 2 cut(s) 428, 664
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 1048
Bse1I ACTGG 2 cut(s) 296, 463
BseBI CCWGG 3 cut(s) 60, 924, 1193
BseCI ATCGAT 1 cut(s) 1296
BseDI CCNNGG 2 cut(s) 428, 664
BseGI GGATG 3 cut(s) 739, 1037, 1237
BseLI CCNNNNNNNGG 1 cut(s) 1048
BseMII CTCAG 1 cut(s) 1121
BseNI ACTGG 2 cut(s) 296, 463
BseRI GAGGAG 2 cut(s) 500, 1081
BseSI GKGCMC 1 cut(s) 614
BseXI GCAGC 4 cut(s) 266, 580, 752, 1190
BshFI GGCC 3 cut(s) 835, 985, 1239
BshVI ATCGAT 1 cut(s) 1296
BsiHKAI GWGCWC 1 cut(s) 967
BsiHKCI CYCGRG 2 cut(s) 13, 584
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 1 cut(s) 1048
BsmAI GTCTC 2 cut(s) 563, 1301
BsmBI CGTCTC 1 cut(s) 563
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 1 cut(s) 595
BsnI GGCC 3 cut(s) 835, 985, 1239
BsoBI CYCGRG 2 cut(s) 13, 584
Bsp1286I GDGCHC 3 cut(s) 614, 672, 967
Bsp143I GATC 4 cut(s) 142, 818, 1293, 1333
BspACI CCGC 5 cut(s) 229, 712, 753, 868, 1148
BspANI GGCC 3 cut(s) 835, 985, 1239
BspCNI CTCAG 1 cut(s) 1122
BspDI ATCGAT 1 cut(s) 1296
BspLI GGNNCC 4 cut(s) 288, 691, 709, 1190
BspMAI CTGCAG 1 cut(s) 1208
BspPI GGATC 1 cut(s) 150
BspQI GCTCTTC 1 cut(s) 771
BsrI ACTGG 2 cut(s) 296, 463
BssECI CCNNGG 2 cut(s) 428, 664
BssMI GATC 4 cut(s) 142, 818, 1293, 1333
BssT1I CCWWGG 2 cut(s) 428, 664
Bst2UI CCWGG 3 cut(s) 60, 924, 1193
Bst4CI ACNGT 5 cut(s) 237, 973, 1019, 1272, 1345
Bst6I CTCTTC 4 cut(s) 561, 771, 1276, 1299
BstBAI YACGTR 1 cut(s) 1216
BstDEI CTNAG 1 cut(s) 1130
BstEII GGTNACC 1 cut(s) 1143
BstF5I GGATG 3 cut(s) 739, 1037, 1237
BstKTI GATC 4 cut(s) 145, 821, 1296, 1336
BstMAI GTCTC 2 cut(s) 563, 1301
BstMBI GATC 4 cut(s) 142, 818, 1293, 1333
BstMWI GCNNNNNNNGC 1 cut(s) 962
BstNI CCWGG 3 cut(s) 60, 924, 1193
BstPAI GACNNNNGTC 1 cut(s) 442
BstPI GGTNACC 1 cut(s) 1143
BstSCI CCNGG 3 cut(s) 58, 922, 1191
BstSFI CTRYAG 1 cut(s) 1204
BstSLI GKGCMC 1 cut(s) 614
BstV1I GCAGC 4 cut(s) 266, 580, 752, 1190
BstV2I GAAGAC 1 cut(s) 1059
BstX2I RGATCY 1 cut(s) 818
BstYI RGATCY 1 cut(s) 818
Bsu15I ATCGAT 1 cut(s) 1296
BsuI GTATCC 2 cut(s) 225, 334
BsuRI GGCC 3 cut(s) 835, 985, 1239
BsuTUI ATCGAT 1 cut(s) 1296
BtsCI GGATG 3 cut(s) 739, 1037, 1237
BtsIMutI CAGTG 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 834, 983
ClaI ATCGAT 1 cut(s) 1296
CseI GACGC 2 cut(s) 665, 1151
Csp6I GTAC 2 cut(s) 462, 1096
CviAII CATG 1 cut(s) 1060
CviQI GTAC 2 cut(s) 462, 1096
DdeI CTNAG 1 cut(s) 1130
DpnI GATC 4 cut(s) 144, 820, 1295, 1335
DpnII GATC 4 cut(s) 142, 818, 1293, 1333
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 4 cut(s) 561, 771, 1276, 1299
EarI CTCTTC 4 cut(s) 561, 771, 1276, 1299
Eco130I CCWWGG 2 cut(s) 428, 664
Eco24I GRGCYC 1 cut(s) 672
Eco32I GATATC 1 cut(s) 767
Eco57I CTGAAG 4 cut(s) 116, 1310, 1323, 1350
Eco88I CYCGRG 2 cut(s) 13, 584
Eco91I GGTNACC 1 cut(s) 1143
EcoO65I GGTNACC 1 cut(s) 1143
EcoRII CCWGG 3 cut(s) 58, 922, 1191
EcoRV GATATC 1 cut(s) 767
EcoT14I CCWWGG 2 cut(s) 428, 664
EcoT22I ATGCAT 1 cut(s) 1028
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 2 cut(s) 428, 664
Esp3I CGTCTC 1 cut(s) 563
FaeI CATG 1 cut(s) 1063
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 1059
FauI CCCGC 1 cut(s) 719
Fnu4HI GCNGC 5 cut(s) 255, 594, 741, 868, 1204
FokI GGATG 3 cut(s) 746, 1024, 1244
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 5 cut(s) 255, 594, 741, 868, 1204
FspBI CTAG 5 cut(s) 429, 773, 782, 800, 822
GluI GCNGC 5 cut(s) 255, 594, 741, 868, 1204
HaeIII GGCC 3 cut(s) 835, 985, 1239
HgaI GACGC 2 cut(s) 665, 1151
Hin1II CATG 1 cut(s) 1063
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HinfI GANTC 4 cut(s) 243, 1209, 1264, 1313
HphI GGTGA 3 cut(s) 197, 527, 1137
Hpy166II GTNNAC 6 cut(s) 48, 100, 560, 655, 861, 1213
Hpy188I TCNGA 3 cut(s) 135, 175, 308
Hpy188III TCNNGA 6 cut(s) 119, 381, 586, 687, 851, 1278
Hpy8I GTNNAC 6 cut(s) 48, 100, 560, 655, 861, 1213
HpyAV CCTTC 4 cut(s) 20, 1164, 1178, 1229
HpyCH4III ACNGT 5 cut(s) 237, 973, 1019, 1272, 1345
HpyCH4IV ACGT 1 cut(s) 1215
HpyCH4V TGCA 5 cut(s) 4, 412, 740, 1026, 1206
HpyF10VI GCNNNNNNNGC 1 cut(s) 962
HpyF3I CTNAG 1 cut(s) 1130
HpySE526I ACGT 1 cut(s) 1215
Hsp92II CATG 1 cut(s) 1063
Kzo9I GATC 4 cut(s) 142, 818, 1293, 1333
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 2 cut(s) 713, 1188
Lsp1109I GCAGC 4 cut(s) 266, 580, 752, 1190
LweI GCATC 7 cut(s) 166, 218, 727, 1035, 1046, 1288, 1315
MaeI CTAG 5 cut(s) 429, 773, 782, 800, 822
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 2 cut(s) 724, 1143
MalI GATC 4 cut(s) 144, 820, 1295, 1335
MboI GATC 4 cut(s) 142, 818, 1293, 1333
MfeI CAATTG 2 cut(s) 38, 480
MflI RGATCY 1 cut(s) 818
MhlI GDGCHC 3 cut(s) 614, 672, 967
MlyI GAGTC 2 cut(s) 1218, 1307
MmeI TCCRAC 2 cut(s) 318, 806
Mph1103I ATGCAT 1 cut(s) 1028
MseI TTAA 6 cut(s) 216, 267, 471, 500, 1014, 1170
MspR9I CCNGG 3 cut(s) 60, 924, 1193
MunI CAATTG 2 cut(s) 38, 480
Mva1269I GAATGC 1 cut(s) 595
MvaI CCWGG 3 cut(s) 60, 924, 1193
MwoI GCNNNNNNNGC 1 cut(s) 962
NdeII GATC 4 cut(s) 142, 818, 1293, 1333
NlaIII CATG 1 cut(s) 1063
NlaIV GGNNCC 4 cut(s) 288, 691, 709, 1190
NmuCI GTSAC 1 cut(s) 1143
NsiI ATGCAT 1 cut(s) 1028
PaeR7I CTCGAG 2 cut(s) 13, 584
PciSI GCTCTTC 1 cut(s) 771
PctI GAATGC 1 cut(s) 595
PfeI GAWTC 2 cut(s) 243, 1264
PfoI TCCNGGA 1 cut(s) 922
PkrI GCNGC 5 cut(s) 256, 595, 742, 869, 1205
PleI GAGTC 2 cut(s) 1217, 1307
PpsI GAGTC 2 cut(s) 1217, 1307
Ppu21I YACGTR 1 cut(s) 1216
PshAI GACNNNNGTC 1 cut(s) 442
Psp6I CCWGG 3 cut(s) 58, 922, 1191
PspEI GGTNACC 1 cut(s) 1143
PspGI CCWGG 3 cut(s) 58, 922, 1191
PspN4I GGNNCC 4 cut(s) 288, 691, 709, 1190
PspPI GGNCC 2 cut(s) 834, 983
PspXI VCTCGAGB 1 cut(s) 13
PstI CTGCAG 1 cut(s) 1208
PsuI RGATCY 1 cut(s) 818
RsaI GTAC 2 cut(s) 463, 1097
RsaNI GTAC 2 cut(s) 462, 1096
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 6 cut(s) 216, 267, 471, 500, 1014, 1170
SatI GCNGC 5 cut(s) 255, 594, 741, 868, 1204
Sau3AI GATC 4 cut(s) 142, 818, 1293, 1333
Sau96I GGNCC 2 cut(s) 834, 983
SchI GAGTC 2 cut(s) 1218, 1307
ScrFI CCNGG 3 cut(s) 60, 924, 1193
SduI GDGCHC 3 cut(s) 614, 672, 967
SfaNI GCATC 7 cut(s) 166, 218, 727, 1035, 1046, 1288, 1315
SfcI CTRYAG 1 cut(s) 1204
Sfr274I CTCGAG 2 cut(s) 13, 584
SlaI CTCGAG 2 cut(s) 13, 584
SmlI CTYRAG 4 cut(s) 13, 379, 584, 671
SmoI CTYRAG 4 cut(s) 13, 379, 584, 671
SsiI CCGC 5 cut(s) 229, 712, 753, 868, 1148
SspI AATATT 1 cut(s) 160
SspMI CTAG 5 cut(s) 429, 773, 782, 800, 822
StyD4I CCNGG 3 cut(s) 58, 922, 1191
StyI CCWWGG 2 cut(s) 428, 664
TaaI ACNGT 5 cut(s) 237, 973, 1019, 1272, 1345
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 7 cut(s) 14, 241, 246, 585, 879, 1296, 1336
TatI WGTACW 1 cut(s) 1095
TauI GCSGC 1 cut(s) 870
TfiI GAWTC 2 cut(s) 243, 1264
Tru1I TTAA 6 cut(s) 216, 267, 471, 500, 1014, 1170
Tru9I TTAA 6 cut(s) 216, 267, 471, 500, 1014, 1170
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 1143
TseI GCWGC 4 cut(s) 254, 593, 740, 1203
Tsp45I GTSAC 1 cut(s) 1143
TspDTI ATGAA 3 cut(s) 648, 1048, 1248
TspGWI ACGGA 3 cut(s) 587, 1064, 1147
TspRI CASTG 1 cut(s) 303
XapI RAATTY 4 cut(s) 269, 840, 905, 928
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XhoI CTCGAG 2 cut(s) 13, 584
XmaJI CCTAGG 1 cut(s) 428
XspI CTAG 5 cut(s) 429, 773, 782, 800, 822
Zsp2I ATGCAT 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.