Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

56504750 .. 56509135

Gene Structure 4386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00123000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCTTTCGGTACCAAAGGCGATGTCTATCCAATTGCTAGCTTACGTTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCTAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCGCTGCAGAAAAAGTTGTTTTCTGGAGAACATACAAAAGAATGTCTGTCGGTAGTTGAAACGATATTTGGATCAGGCCCAAGCATGGATGGTGATTTCATTGTGATAAATTTCTTTGCTCTGCAAACAGTTATCAGCTTAATATATTACATGATTCGTGGTCAAGGAACAATCAAATTGTATGTGGCGTACAATGTGTTGGAGAAATTATCATGTCCCAAGGATGATCGTTGGACTAAGTCTCTAAATGATAGTATCTTAGAAGACACAACACATCTGTTATATGGTATGATACATTGTGATGGGATTGGGCATTTGCTATGCATCAATAGACTTAGAGGGGGTTCTAAGCATCTTCACGGCAGAGAGATCATGGATCTTTGGGATCAGATTTGCACAAATCTTCGAACCAGTGGTCCATGGAATTCCACTGATGGTGGTGATCCATCAGTTGATGATAGCTCTTTAATTCAAACTGCAATAAGATATGGAAAGGATGTTGCAAAACATGATCTGCAGAACTGCAAGAACAGGAATCGTTTTCTTAAGGTTTTCATTATATGTGGCATGTGCAAATACACTGCGATAGGATTGGGAAAGATGGATTCTTTAGCCATAAAGAGATTATTGTCATATTTGTCCCAGATTTGTCTGAGTGTCTTCCTTCATTGGATACTGGATGAGCTTGTTGGCAGCTTTACCTTCAACCCTTTGCAGAAAGCATTGATAAATGAATGGCTTCAGTGGTGTGATACTGAGTCTTACAGATTTGATTTTGTAGTGACATCTTTTAGGGATGAAAGTTTTATGAAGCGTCTCTTTTACATTCAGCTTCTTATATATGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.96

Weight (kDa)

7.13

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	89 - 138	4e-07	Eukaryotic membrane protein family
DBC1	PF14443	189 - 235	1.5e-10	DBC1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	11
AclWI	GGATC	4 cut(s)	232, 537, 546, 590
AcsI	RAATTY	2 cut(s)	262, 577
AcuI	CTGAAG	1 cut(s)	878
AfaI	GTAC	2 cut(s)	13, 344
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	3 cut(s)	212, 626, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AloI	GAACNNNNNNTCC	2 cut(s)	553, 585
AluBI	AGCT	6 cut(s)	42, 291, 615, 838, 849, 985
AluI	AGCT	6 cut(s)	42, 291, 615, 838, 849, 985
Alw26I	GTCTC	2 cut(s)	399, 974
AlwI	GGATC	4 cut(s)	232, 537, 546, 590
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	157, 846
ApoI	RAATTY	2 cut(s)	262, 577
ArsI	GACNNNNNNTTYG	4 cut(s)	9, 41, 553, 585
Asp700I	GAANNNNTTC	1 cut(s)	891
Asp718I	GGTACC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	230, 569
AsuHPI	GGTGA	3 cut(s)	84, 257, 605
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	423, 805
BbvI	GCAGC	2 cut(s)	144, 858
BccI	CCATC	6 cut(s)	120, 236, 449, 581, 607, 748
BceAI	ACGGC	1 cut(s)	529
BciVI	GTATCC	1 cut(s)	819
BcoDI	GTCTC	2 cut(s)	399, 974
BfaI	CTAG	1 cut(s)	39
BfmI	CTRYAG	4 cut(s)	129, 138, 158, 668
BfrI	CTTAAG	1 cut(s)	698
BfuI	GTATCC	1 cut(s)	819
BisI	GCNGC	2 cut(s)	158, 847
BlsI	GCNGC	2 cut(s)	159, 848
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	230, 569
BmiI	GGNNCC	1 cut(s)	13
BmsI	GCATC	2 cut(s)	486, 514
BmtI	GCTAGC	1 cut(s)	42
BpiI	GAAGAC	2 cut(s)	423, 805
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	372, 572
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	564, 834
Bse8I	GATNNNNATC	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	372, 572
BseGI	GGATG	5 cut(s)	247, 382, 655, 838, 955
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	51, 797, 900
BseNI	ACTGG	2 cut(s)	564, 834
BseXI	GCAGC	2 cut(s)	144, 858
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	354, 778
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	399, 974
BsmBI	CGTCTC	1 cut(s)	974
BsmFI	GGGAC	2 cut(s)	354, 778
BsnI	GGCC	1 cut(s)	231
Bsp119I	TTCGAA	1 cut(s)	559
Bsp143I	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
Bsp19I	CCATGG	1 cut(s)	572
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	3 cut(s)	52, 798, 901
BspLI	GGNNCC	1 cut(s)	13
BspMAI	CTGCAG	2 cut(s)	162, 672
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	4 cut(s)	232, 537, 546, 590
BspT104I	TTCGAA	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	11
BspTI	CTTAAG	1 cut(s)	698
BsrI	ACTGG	2 cut(s)	564, 834
BssECI	CCNNGG	2 cut(s)	372, 572
BssMI	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
BssT1I	CCWWGG	2 cut(s)	372, 572
Bst4CI	ACNGT	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	559
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	7 cut(s)	60, 390, 412, 488, 501, 806, 909
BstDSI	CCRYGG	1 cut(s)	572
BstF5I	GGATG	5 cut(s)	247, 382, 655, 838, 955
BstKTI	GATC	7 cut(s)	227, 382, 525, 532, 541, 598, 667
BstMAI	GTCTC	2 cut(s)	399, 974
BstMBI	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	724
BstSFI	CTRYAG	4 cut(s)	129, 138, 158, 668
BstV1I	GCAGC	2 cut(s)	144, 858
BstV2I	GAAGAC	2 cut(s)	423, 805
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	819
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	572
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	5 cut(s)	247, 382, 655, 838, 955
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	4 cut(s)	571, 582, 732, 902
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	230, 569
CseI	GACGC	1 cut(s)	956
Csp6I	GTAC	2 cut(s)	12, 343
CviAII	CATG	9 cut(s)	122, 238, 304, 366, 526, 573, 662, 721, 1002
CviQI	GTAC	2 cut(s)	12, 343
DdeI	CTNAG	7 cut(s)	60, 390, 412, 488, 501, 806, 909
DpnI	GATC	7 cut(s)	226, 381, 524, 531, 540, 597, 666
DpnII	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
Eco130I	CCWWGG	2 cut(s)	372, 572
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	372, 572
EcoT22I	ATGCAT	1 cut(s)	479
ErhI	CCWWGG	2 cut(s)	372, 572
Esp3I	CGTCTC	1 cut(s)	974
FaeI	CATG	9 cut(s)	125, 241, 307, 369, 529, 576, 665, 724, 1005
FalI	AAGNNNNNCTT	2 cut(s)	956, 988
FaqI	GGGAC	2 cut(s)	354, 778
FatI	CATG	9 cut(s)	121, 237, 303, 365, 525, 572, 661, 720, 1001
Fnu4HI	GCNGC	2 cut(s)	158, 847
FokI	GGATG	5 cut(s)	254, 389, 662, 845, 962
Fsp4HI	GCNGC	2 cut(s)	158, 847
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	2 cut(s)	158, 847
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	231
HgaI	GACGC	1 cut(s)	956
Hin1II	CATG	9 cut(s)	125, 241, 307, 369, 529, 576, 665, 724, 1005
HinfI	GANTC	4 cut(s)	307, 688, 758, 911
HphI	GGTGA	3 cut(s)	84, 257, 605
Hpy188I	TCNGA	3 cut(s)	117, 543, 807
Hpy188III	TCNNGA	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	827, 865
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	7 cut(s)	60, 390, 412, 488, 501, 806, 909
HpySE526I	ACGT	1 cut(s)	46
Hsp92II	CATG	9 cut(s)	125, 241, 307, 369, 529, 576, 665, 724, 1005
KpnI	GGTACC	1 cut(s)	15
Kzo9I	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
LpnPI	CCDG	8 cut(s)	111, 117, 162, 213, 577, 670, 809, 815
Lsp1109I	GCAGC	2 cut(s)	144, 858
LweI	GCATC	2 cut(s)	486, 514
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	46
MaeIII	GTNAC	3 cut(s)	50, 934, 997
MalI	GATC	7 cut(s)	226, 381, 524, 531, 540, 597, 666
MboI	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
MboII	GAAGA	6 cut(s)	71, 76, 428, 500, 548, 805
MfeI	CAATTG	1 cut(s)	33
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	7 cut(s)	33, 84, 262, 329, 359, 577, 621
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	2 cut(s)	333, 365
MnlI	CCTC	2 cut(s)	159, 485
Mph1103I	ATGCAT	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	3 cut(s)	293, 620, 699
MslI	CAYNNNNRTG	1 cut(s)	453
MspCI	CTTAAG	1 cut(s)	698
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	572
NdeII	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	9 cut(s)	125, 241, 307, 369, 529, 576, 665, 724, 1005
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	3 cut(s)	50, 934, 997
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	3 cut(s)	307, 688, 758
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	159, 848
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	2 cut(s)	230, 569
PstI	CTGCAG	2 cut(s)	162, 672
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	529
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	2 cut(s)	13, 344
RsaNI	GTAC	2 cut(s)	12, 343
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	293, 620, 699
SatI	GCNGC	2 cut(s)	158, 847
Sau3AI	GATC	7 cut(s)	224, 379, 522, 529, 538, 595, 664
Sau96I	GGNCC	2 cut(s)	230, 569
SchI	GAGTC	1 cut(s)	920
SfaNI	GCATC	2 cut(s)	486, 514
SfcI	CTRYAG	4 cut(s)	129, 138, 158, 668
SfuI	TTCGAA	1 cut(s)	559
SinI	GGWCC	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	453
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	7 cut(s)	33, 84, 262, 329, 359, 577, 621
SspMI	CTAG	1 cut(s)	39
StyI	CCWWGG	2 cut(s)	372, 572
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	559
TasI	AATT	7 cut(s)	33, 84, 262, 329, 359, 577, 621
TfiI	GAWTC	3 cut(s)	307, 688, 758
Tru1I	TTAA	3 cut(s)	293, 620, 699
Tru9I	TTAA	3 cut(s)	293, 620, 699
TscAI	CASTG	4 cut(s)	571, 589, 739, 902
TseFI	GTSAC	3 cut(s)	50, 934, 997
TseI	GCWGC	2 cut(s)	157, 846
Tsp45I	GTSAC	3 cut(s)	50, 934, 997
TspDTI	ATGAA	7 cut(s)	78, 241, 697, 809, 900, 966, 977
TspRI	CASTG	4 cut(s)	571, 589, 739, 902
Tth111I	GACNNNGTC	1 cut(s)	391
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	262, 577
XceI	RCATGY	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.