Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

42789391 .. 42794097

Gene Structure 4707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCTCCGGCTGCCAACCAATTATGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCAGAACTTTGTGAACCATTCATTGGCTGGAAAGAGTAAGAGCTTACGTTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

75

Amino Acids

8.64

Weight (kDa)

6.89

Isoelectric Point (pI)

58.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	1 - 53	1e-06	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	44
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	76, 109
BspCNI	CTCAG	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	76, 109
Bst4CI	ACNGT	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	79, 112
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	76, 109
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	42
CviJI	RGCY	4 cut(s)	10, 137, 153, 170
CviKI_1	RGCY	4 cut(s)	10, 137, 153, 170
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	78, 111
DpnII	GATC	2 cut(s)	76, 109
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
FaiI	YATR	2 cut(s)	24, 92
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
Fnu4HI	GCNGC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	7
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	76, 109
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	13, 20, 123, 222
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	78, 111
MboI	GATC	2 cut(s)	76, 109
MboII	GAAGA	4 cut(s)	71, 74, 182, 187
MluCI	AATT	2 cut(s)	19, 195
MspI	CCGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	76, 109
NmuCI	GTSAC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	12
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	76, 109
SetI	ASST	4 cut(s)	106, 155, 160, 211
SgeI	CNNG	6 cut(s)	19, 40, 83, 150, 178, 221
Sse9I	AATT	2 cut(s)	19, 195
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	160
TasI	AATT	2 cut(s)	19, 195
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	120, 189
TspRI	CASTG	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.