Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

56786197 .. 56788497

Gene Structure 2301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG433700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCGTTGAGATCGGGCGGCTGGAAGCTCTCGTTAGCGATTTTGAGTAGAAAAGCTCCCCCAAAGAAAAAGAAGCCGGACTCTTCCACCAATCCAACTCAGATCCAATCCAATAGAGCCGGAGAGGACGAAACCCGTTGCTGTATTCATTGCTTTCGGTACCAACGGCGATGTCTATCTAATTGCTCCATTGCGGCGGCCTTTGCTTCTGACCAGAGACAGTACCAAGTTGTTCTTATCACACATTCAGCTCACGAGAGCTTACGTTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAGACATGATACTACAGGCTCTGTAGAGTTGCCTCTTTCGCTGCAGAAAAAGTTGTTTTCTGGAGAACATACAAAAGAATGTCTTTCGGTAGTTGAAACGATATTTGGATCAGGCCCAAGCATGGATGGTGATTTCATTGTGATAAATTTCTTTGCTCTGATATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.59

Weight (kDa)

9.05

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	159
AciI	CCGC	3 cut(s)	18, 194, 197
AclWI	GGATC	2 cut(s)	97, 451
AcsI	RAATTY	1 cut(s)	481
AfaI	GTAC	2 cut(s)	161, 224
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	1 cut(s)	431
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	5 cut(s)	28, 56, 251, 261, 503
AluI	AGCT	5 cut(s)	28, 56, 251, 261, 503
Alw26I	GTCTC	2 cut(s)	211, 331
AlwI	GGATC	2 cut(s)	97, 451
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	198, 448
ApeKI	GCWGC	1 cut(s)	376
ApoI	RAATTY	1 cut(s)	481
Asp718I	GGTACC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	303, 476
BanI	GGYRCC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	363
BccI	CCATC	2 cut(s)	339, 455
BceAI	ACGGC	1 cut(s)	182
BcoDI	GTCTC	2 cut(s)	211, 331
BfmI	CTRYAG	3 cut(s)	348, 357, 377
BisI	GCNGC	4 cut(s)	19, 195, 198, 377
BlsI	GCNGC	4 cut(s)	20, 196, 199, 378
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	417
BsaBI	GATNNNNATC	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse3DI	GCAATG	2 cut(s)	148, 189
Bse8I	GATNNNNATC	1 cut(s)	175
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	2 cut(s)	148, 189
BseMII	CTCAG	2 cut(s)	113, 270
BseXI	GCAGC	1 cut(s)	363
BshFI	GGCC	2 cut(s)	200, 450
BshNI	GGYRCC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	77, 120
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	211, 331
BsnI	GGCC	2 cut(s)	200, 450
Bsp143I	GATC	3 cut(s)	11, 102, 443
BspACI	CCGC	3 cut(s)	18, 194, 197
BspANI	GGCC	2 cut(s)	200, 450
BspCNI	CTCAG	2 cut(s)	112, 271
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	2 cut(s)	97, 451
BspT107I	GGYRCC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	148, 189
BssMI	GATC	3 cut(s)	11, 102, 443
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	88
BstDEI	CTNAG	2 cut(s)	99, 279
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	3 cut(s)	14, 105, 446
BstMAI	GTCTC	2 cut(s)	211, 331
BstMBI	GATC	3 cut(s)	11, 102, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 373
BstSFI	CTRYAG	3 cut(s)	348, 357, 377
BstV1I	GCAGC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	200, 450
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	466
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	160, 223
CviAII	CATG	2 cut(s)	341, 457
CviQI	GTAC	2 cut(s)	160, 223
DdeI	CTNAG	2 cut(s)	99, 279
DpnI	GATC	3 cut(s)	13, 104, 445
DpnII	GATC	3 cut(s)	11, 102, 443
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	498
FaeI	CATG	2 cut(s)	344, 460
FaiI	YATR	3 cut(s)	342, 405, 458
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 402, 434
FatI	CATG	2 cut(s)	340, 456
Fnu4HI	GCNGC	4 cut(s)	19, 195, 198, 377
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	4 cut(s)	19, 195, 198, 377
GluI	GCNGC	4 cut(s)	19, 195, 198, 377
GsuI	CTGGAG	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	200, 450
HapII	CCGG	2 cut(s)	77, 120
Hin1II	CATG	2 cut(s)	344, 460
HinfI	GANTC	1 cut(s)	80
HpaII	CCGG	2 cut(s)	77, 120
HphI	GGTGA	2 cut(s)	303, 476
Hpy188I	TCNGA	4 cut(s)	102, 211, 336, 495
Hpy188III	TCNNGA	2 cut(s)	254, 396
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 373
HpyF3I	CTNAG	2 cut(s)	99, 279
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	2 cut(s)	344, 460
KpnI	GGTACC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	11, 102, 443
LmnI	GCTCC	2 cut(s)	61, 191
LpnPI	CCDG	8 cut(s)	7, 90, 133, 227, 330, 336, 381, 432
Lsp1109I	GCAGC	1 cut(s)	363
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	13, 104, 445
MboI	GATC	3 cut(s)	11, 102, 443
MboII	GAAGA	3 cut(s)	75, 290, 295
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	181, 303, 481
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	118, 378
MseI	TTAA	1 cut(s)	505
MspI	CCGG	2 cut(s)	77, 120
MwoI	GCNNNNNNNGC	2 cut(s)	203, 373
NdeII	GATC	3 cut(s)	11, 102, 443
NlaIII	CATG	2 cut(s)	344, 460
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	269
PkrI	GCNGC	4 cut(s)	20, 196, 199, 378
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	449
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	161, 224
RsaNI	GTAC	2 cut(s)	160, 223
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	4 cut(s)	19, 195, 198, 377
Sau3AI	GATC	3 cut(s)	11, 102, 443
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	74
SetI	ASST	7 cut(s)	30, 58, 253, 263, 268, 319, 505
SfcI	CTRYAG	3 cut(s)	348, 357, 377
Sse9I	AATT	3 cut(s)	181, 303, 481
SsiI	CCGC	3 cut(s)	18, 194, 197
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	1 cut(s)	268
TasI	AATT	3 cut(s)	181, 303, 481
TauI	GCSGC	3 cut(s)	21, 197, 200
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	137, 297, 460
XapI	RAATTY	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.