Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Forward (+)

22699843 .. 22703384

Gene Structure 3542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGGCCGTACTCCACGGCGCGTCGATTATGCTCCGGTTGTCAACCAATTGGGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTGGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGTGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGCTGTTCTTCTTATGGAGTACTCAAATTCAATGACACTTCTCACTATGCAGATAGCTACACGGATGGTTATTCAGTATGGGTGGGGACCTGATGATAGTCCTGCAATATATTATCACAGCAATGCGTCTACTGTTTTAAGCATGGGGAATAACCATGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

154

Amino Acids

17.53

Weight (kDa)

5.89

Isoelectric Point (pI)

31.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	3 - 56	1.8e-08	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	463
AasI	GACNNNNNNGTC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	6, 279
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	2 cut(s)	12, 320
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	6 cut(s)	190, 214, 223, 239, 248, 330
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	3 cut(s)	251, 302, 356
AluI	AGCT	3 cut(s)	251, 302, 356
Alw26I	GTCTC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	2 cut(s)	6, 279
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	386
AsuC2I	CCSGG	2 cut(s)	265, 266
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	265, 266
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	205
BglII	AGATCT	1 cut(s)	139
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	2 cut(s)	265, 266
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	265, 266
BpuMI	CCSGG	2 cut(s)	265, 266
BsaJI	CCNNGG	4 cut(s)	16, 264, 276, 282
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	62, 227
Bse3DI	GCAATG	1 cut(s)	427
BseDI	CCNNGG	4 cut(s)	16, 264, 276, 282
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	62, 227
BseXI	GCAGC	1 cut(s)	256
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	8, 281
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	37, 265
BslFI	GGGAC	2 cut(s)	68, 399
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	68, 399
BsnI	GGCC	2 cut(s)	8, 281
BsoBI	CYCGRG	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	106, 139
Bsp19I	CCATGG	2 cut(s)	276, 282
BspANI	GGCC	2 cut(s)	8, 281
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	62, 227
BssECI	CCNNGG	4 cut(s)	16, 264, 276, 282
BssMI	GATC	2 cut(s)	106, 139
BssT1I	CCWWGG	2 cut(s)	276, 282
Bst4CI	ACNGT	2 cut(s)	76, 433
Bst6I	CTCTTC	2 cut(s)	209, 234
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	3 cut(s)	16, 276, 282
BstF5I	GGATG	1 cut(s)	369
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	2 cut(s)	109, 142
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	106, 139
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	263, 264
BstSFI	CTRYAG	1 cut(s)	205
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	139
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	8, 281
BtgI	CCRYGG	3 cut(s)	16, 276, 282
BtsCI	GGATG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	386
Cfr9I	CCCGGG	1 cut(s)	264
CseI	GACGC	2 cut(s)	12, 414
Csp6I	GTAC	2 cut(s)	11, 319
CviAII	CATG	5 cut(s)	177, 277, 283, 442, 455
CviJI	RGCY	8 cut(s)	8, 167, 251, 263, 269, 281, 302, 356
CviKI_1	RGCY	8 cut(s)	8, 167, 251, 263, 269, 281, 302, 356
CviQI	GTAC	2 cut(s)	11, 319
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	108, 141
DpnII	GATC	2 cut(s)	106, 139
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	2 cut(s)	6, 279
Eam1104I	CTCTTC	2 cut(s)	209, 234
EarI	CTCTTC	2 cut(s)	209, 234
Eco130I	CCWWGG	2 cut(s)	276, 282
Eco47I	GGWCC	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	276, 282
ErhI	CCWWGG	2 cut(s)	276, 282
FaeI	CATG	5 cut(s)	180, 280, 286, 445, 458
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 291, 323
FaqI	GGGAC	2 cut(s)	68, 399
FatI	CATG	5 cut(s)	176, 276, 282, 441, 454
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	1 cut(s)	270
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	8, 281
HapII	CCGG	2 cut(s)	37, 265
HgaI	GACGC	2 cut(s)	12, 414
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	180, 280, 286, 445, 458
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HpaII	CCGG	2 cut(s)	37, 265
Hpy166II	GTNNAC	3 cut(s)	45, 154, 429
Hpy188I	TCNGA	1 cut(s)	144
Hpy8I	GTNNAC	3 cut(s)	45, 154, 429
Hpy99I	CGWCG	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	76, 433
HpyCH4V	TGCA	2 cut(s)	349, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	5 cut(s)	180, 280, 286, 445, 458
HspAI	GCGC	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	106, 139
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	8 cut(s)	43, 50, 153, 193, 240, 278, 402, 414
Lsp1109I	GCAGC	1 cut(s)	256
MalI	GATC	2 cut(s)	108, 141
MboI	GATC	2 cut(s)	106, 139
MboII	GAAGA	5 cut(s)	101, 104, 226, 251, 299
MfeI	CAATTG	1 cut(s)	49
MflI	RGATCY	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	4 cut(s)	49, 231, 325, 458
MluNI	TGGCCA	1 cut(s)	281
MnlI	CCTC	1 cut(s)	175
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	437
MslI	CAYNNNNRTG	2 cut(s)	281, 420
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	2 cut(s)	37, 265
MspR9I	CCNGG	2 cut(s)	265, 266
MunI	CAATTG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NciI	CCSGG	2 cut(s)	265, 266
NcoI	CCATGG	2 cut(s)	276, 282
NdeII	GATC	2 cut(s)	106, 139
NlaIII	CATG	5 cut(s)	180, 280, 286, 445, 458
NlaIV	GGNNCC	1 cut(s)	387
NspI	RCATGY	1 cut(s)	180
PciI	ACATGT	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	386
PscI	ACATGT	1 cut(s)	176
PsiI	TTATAA	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	386
PspPPI	RGGWCCY	1 cut(s)	386
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	2 cut(s)	12, 320
RsaNI	GTAC	2 cut(s)	11, 319
RseI	CAYNNNNRTG	2 cut(s)	281, 420
SaqAI	TTAA	1 cut(s)	437
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	106, 139
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	320
ScrFI	CCNGG	2 cut(s)	265, 266
SetI	ASST	6 cut(s)	136, 212, 253, 304, 358, 391
SfcI	CTRYAG	1 cut(s)	205
SinI	GGWCC	1 cut(s)	386
SmaI	CCCGGG	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	281, 420
SrfI	GCCCGGGC	1 cut(s)	266
Sse9I	AATT	4 cut(s)	49, 231, 325, 458
StyD4I	CCNGG	2 cut(s)	263, 264
StyI	CCWWGG	2 cut(s)	276, 282
TaaI	ACNGT	2 cut(s)	76, 433
TaqI	TCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	49, 231, 325, 458
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	150
TspGWI	ACGGA	1 cut(s)	376
TspMI	CCCGGG	1 cut(s)	264
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	386
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	428
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.