Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003472

Physical Location & Seq

Genomic Coordinates Reverse (-)

9335632 .. 9336952

Gene Structure 1321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGGGTTGGGGGACGAAGGTGGGGAGGAAGAAGAAGAGGGTGGGGAGAGCGTGGCATAGGTGAGGGAGGCGGAGGAGGAGGCGAGGGTGAGGAAGACGAGAAGGGCGAAGAGGTAAAAGGCAAAGAGAGCGGGAGGAGAGCGGAGGAGAGGGAGGCGGTGGTGGCCGTGCTCCACGGCGCGTCGATTATGCTCCGGTTGTCAACCAATTGGGACTGGTTCGTCAGTCTCACTGTTGATGACTACCCTTTTCTCAAACAAGACGATCTTCTTCACATTATGTCATTTCTACCTAAAGATCTGAACTTTGTGAACCATTCATTGGCTGGAAAGACATGTGAGGGTTTCAATGTTTTGTGGTGCTACAGGTTGAAGAGATTGAAACCAGTAATTGTTGAAGAGATTGAAGCTCAGTTTTCAGCCCGGGCTGCTTCCATGGCCATGGTCTTTATCAACAAAGTTGTTCTTCTTATGGAGTACTCGAATTCAATGACACTTCTCACTATGCAGGTAAGATCTTTATTTAATGGAATATTCAAAATGCATCAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006029 GO:0006807 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0010033 GO:0010721 GO:0010975 GO:0010977 GO:0012505 GO:0016020 GO:0019538 GO:0022008 GO:0030154 GO:0030166 GO:0031090 GO:0031344 GO:0031345 GO:0031984 GO:0032101 GO:0032102 GO:0032501 GO:0032502 GO:0034097 GO:0034645 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045595 GO:0045596 GO:0045664 GO:0045665 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048679 GO:0048681 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050768 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051129 GO:0051239 GO:0051241 GO:0051960 GO:0051961 GO:0060284 GO:0065007 GO:0070555 GO:0070570 GO:0070571 GO:0071704 GO:0080134 GO:0080135 GO:0098588 GO:0098791 GO:0120035 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903034 GO:1903035 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

185

Amino Acids

20.74

Weight (kDa)

6.92

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Branch	PF02485	54 - 108	1.7e-08	Core-2/I-Branching enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003472)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21801
pyrus_communis	pycom08g10520
rosa_chinensis	RchiOBHm_Chr5g0032441
rosa_laevigata	RLG00000000948 RLG00000001286 RLG00000011423 RLG00000013517 RLG00000014693 RLG00000029764 RLG00000030233 RLG00000030281 RLG00000030404 RLG00000033352 RLG00000033724 RLG00000034240
rosa_roxburghii	Rroxscaffold_2G00123000 Rroxscaffold_3G00225730 Rroxscaffold_3G00231950 Rroxscaffold_3G00235450 Rroxscaffold_3G00248940 Rroxscaffold_3G00249200 Rroxscaffold_7G00198320 Rroxscaffold_7G00210420
rosa_rugosa	Rorug02G0651800 Rorug05G0579900
rosa_samantha	Rh2AG373900 Rh2BG230600 Rh3DG123800 Rh4CG126700 Rh5AG260900 Rh5CG223800 Rh5DG409000 Rh6CG161600 Rh6DG153100 Rh7CG397400 Rh7CG433700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccBSI	CCGCTC	2 cut(s)	132, 143
AccII	CGCG	1 cut(s)	182
AciI	CCGC	4 cut(s)	72, 132, 143, 158
AcoI	YGGCCR	2 cut(s)	165, 438
AcsI	RAATTY	1 cut(s)	484
AfaI	GTAC	2 cut(s)	479, 551
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	7 cut(s)	349, 373, 382, 398, 407, 489, 538
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	2 cut(s)	165, 438
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	182
AsuC2I	CCSGG	2 cut(s)	424, 425
AsuHPI	GGTGA	2 cut(s)	74, 101
AvaI	CYCGRG	1 cut(s)	423
BalI	TGGCCA	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	415
BceAI	ACGGC	2 cut(s)	152, 193
BcnI	CCSGG	2 cut(s)	424, 425
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	553
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	499
BglII	AGATCT	2 cut(s)	298, 515
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
BmcAI	AGTACT	2 cut(s)	479, 551
Bme1390I	CCNGG	2 cut(s)	424, 425
BmeT110I	CYCGRG	1 cut(s)	423
BmrFI	CCNGG	2 cut(s)	424, 425
BpiI	GAAGAC	1 cut(s)	102
BpuMI	CCSGG	2 cut(s)	424, 425
BsaJI	CCNNGG	4 cut(s)	175, 423, 435, 441
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	221, 386
BseDI	CCNNGG	4 cut(s)	175, 423, 435, 441
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	425
BseNI	ACTGG	2 cut(s)	221, 386
BseRI	GAGGAG	4 cut(s)	90, 93, 151, 161
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	167, 440
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	196, 424
BslFI	GGGAC	2 cut(s)	27, 227
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	27, 227
BsnI	GGCC	2 cut(s)	167, 440
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	265, 298, 515
Bsp19I	CCATGG	2 cut(s)	435, 441
BspACI	CCGC	4 cut(s)	72, 132, 143, 158
BspANI	GGCC	2 cut(s)	167, 440
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	499
BsrBI	CCGCTC	2 cut(s)	132, 143
BsrI	ACTGG	2 cut(s)	221, 386
BssECI	CCNNGG	4 cut(s)	175, 423, 435, 441
BssMI	GATC	3 cut(s)	265, 298, 515
BssT1I	CCWWGG	2 cut(s)	435, 441
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	4 cut(s)	31, 105, 368, 393
BstDEI	CTNAG	1 cut(s)	411
BstDSI	CCRYGG	3 cut(s)	175, 435, 441
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	3 cut(s)	268, 301, 518
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	265, 298, 515
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 164, 428, 437
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	422, 423
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	2 cut(s)	298, 515
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	2 cut(s)	298, 515
BsuRI	GGCC	2 cut(s)	167, 440
BtgI	CCRYGG	3 cut(s)	175, 435, 441
BtsIMutI	CAGTG	1 cut(s)	231
BveI	ACCTGC	1 cut(s)	499
CfoI	GCGC	1 cut(s)	182
Cfr9I	CCCGGG	1 cut(s)	423
CseI	GACGC	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	478, 550
CviAII	CATG	3 cut(s)	336, 436, 442
CviJI	RGCY	6 cut(s)	167, 326, 410, 422, 428, 440
CviKI_1	RGCY	6 cut(s)	167, 326, 410, 422, 428, 440
CviQI	GTAC	2 cut(s)	478, 550
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	3 cut(s)	267, 300, 517
DpnII	GATC	3 cut(s)	265, 298, 515
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	165, 438
Eam1104I	CTCTTC	4 cut(s)	31, 105, 368, 393
EarI	CTCTTC	4 cut(s)	31, 105, 368, 393
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	435, 441
Eco88I	CYCGRG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	435, 441
EcoT22I	ATGCAT	1 cut(s)	546
ErhI	CCWWGG	2 cut(s)	435, 441
FaeI	CATG	3 cut(s)	339, 439, 445
FaiI	YATR	8 cut(s)	59, 191, 281, 337, 437, 443, 473, 506
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 450, 482
FaqI	GGGAC	2 cut(s)	27, 227
FatI	CATG	3 cut(s)	335, 435, 441
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	553
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	167, 440
HapII	CCGG	2 cut(s)	196, 424
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	339, 439, 445
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HpaII	CCGG	2 cut(s)	196, 424
HphI	GGTGA	2 cut(s)	74, 101
Hpy166II	GTNNAC	2 cut(s)	204, 313
Hpy188I	TCNGA	1 cut(s)	303
Hpy8I	GTNNAC	2 cut(s)	204, 313
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	12, 97
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	2 cut(s)	508, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 164, 428, 437
HpyF3I	CTNAG	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	339, 439, 445
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	265, 298, 515
LmnI	GCTCC	2 cut(s)	177, 198
LpnPI	CCDG	7 cut(s)	202, 209, 312, 352, 399, 437, 494
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	553
MalI	GATC	3 cut(s)	267, 300, 517
MbiI	CCGCTC	2 cut(s)	132, 143
MboI	GATC	3 cut(s)	265, 298, 515
MfeI	CAATTG	1 cut(s)	208
MflI	RGATCY	2 cut(s)	298, 515
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	3 cut(s)	208, 390, 484
MluNI	TGGCCA	1 cut(s)	440
Mox20I	TGGCCA	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	546
MscI	TGGCCA	1 cut(s)	440
MseI	TTAA	1 cut(s)	525
MslI	CAYNNNNRTG	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	440
MspI	CCGG	2 cut(s)	196, 424
MspR9I	CCNGG	2 cut(s)	424, 425
MunI	CAATTG	1 cut(s)	208
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	129, 164, 428, 437
NciI	CCSGG	2 cut(s)	424, 425
NcoI	CCATGG	2 cut(s)	435, 441
NdeII	GATC	3 cut(s)	265, 298, 515
NlaIII	CATG	3 cut(s)	339, 439, 445
NsiI	ATGCAT	1 cut(s)	546
NspI	RCATGY	1 cut(s)	339
PciI	ACATGT	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	298, 515
RsaI	GTAC	2 cut(s)	479, 551
RsaNI	GTAC	2 cut(s)	478, 550
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	3 cut(s)	265, 298, 515
ScaI	AGTACT	2 cut(s)	479, 551
ScrFI	CCNGG	2 cut(s)	424, 425
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	7 cut(s)	23, 64, 117, 295, 371, 412, 513
SfcI	CTRYAG	1 cut(s)	364
SmaI	CCCGGG	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	440
SrfI	GCCCGGGC	1 cut(s)	425
Sse9I	AATT	3 cut(s)	208, 390, 484
SsiI	CCGC	4 cut(s)	72, 132, 143, 158
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	2 cut(s)	422, 423
StyI	CCWWGG	2 cut(s)	435, 441
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	185, 482
TasI	AATT	3 cut(s)	208, 390, 484
TatI	WGTACW	2 cut(s)	477, 549
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	309
TspMI	CCCGGG	1 cut(s)	423
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	484
XceI	RCATGY	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	423
XspI	CTAG	1 cut(s)	553
ZrmI	AGTACT	2 cut(s)	479, 551
Zsp2I	ATGCAT	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.