Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262583.1

Orthogroup ID

OG0004046

Physical Location & Seq

Genomic Coordinates Forward (+)

532 .. 811

Gene Structure 280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 280 bp

atggcgtcaggccacgaagtccaagtgaagctctcctccgccagagacctcaagaacgtgaactggagacacggccccgtcaagccgtacgccgtcgggtgggtcgagccgaggaacaagctctccaccaaggtggacgaggatggcgacacgtcgcccgaatgggacgagacgctgacaatccctatccccggtcctgtcaacgacgacaccatgctccacatcgacatcgtccatgccggagctgagcccgacaccaaacagctggtgggatctgctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

93

Amino Acids

10.17

Weight (kDa)

4.98

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23950 AT5G23950
fragaria_vesca	FvH4_2g02750 FvH4_2g02750 FvH4_6g31310
malus_domestica	MD01G1205900.v1.1 MD07G1276700.v1.1
prunus_persica	Prupe.2G298800_v2.0.a1
pyrus_communis	pycom01g21560
rosa_chinensis	RchiOBHm_Chr2g0138051 RchiOBHm_Chr6g0247211
rosa_laevigata	RLG00000015211 RLG00000015214 RLG00000019714
rosa_multiflora	Rmu_co8262583.1_g000001 Rmu_sc0004368.1_g000003 Rmu_sc0008250.1_g000006 Rmu_sc0042105.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433600 Rroxscaffold_2G00106560 Rroxscaffold_7G00214240
rosa_rugosa	Rorug02G0349200 Rorug05G0524300
rosa_samantha	Rh2AG396000 Rh2BG410800 Rh2CG382500 Rh6AG038500 Rh6BG033300 Rh6CG034200 Rh6DG031800
rosa_wichuraiana	Rw2G032330 Rw2G032380 Rw6G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	99, 191
AflIII	ACRYGT	1 cut(s)	150
AjiI	CACGTC	1 cut(s)	153
AleI	CACNNNNGTG	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	31, 121, 245, 265
AluI	AGCT	4 cut(s)	31, 121, 245, 265
Alw26I	GTCTC	3 cut(s)	39, 61, 164
AoxI	GGCC	2 cut(s)	10, 73
AspS9I	GGNCC	2 cut(s)	74, 194
AsuC2I	CCSGG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	252
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	3 cut(s)	70, 77, 88
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	3 cut(s)	39, 61, 164
BlpI	GCTNAGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	74, 194
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	85
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	110, 129, 190
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 191
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	3 cut(s)	110, 129, 190
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	99, 191
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	12, 75
BsiSI	CCGG	2 cut(s)	192, 240
BsiWI	CGTACG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	99, 191
BsmAI	GTCTC	3 cut(s)	39, 61, 164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	12, 75
Bso31I	GGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	272
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	12, 75
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	110, 129, 190
BssMI	GATC	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	275
BstMAI	GTCTC	3 cut(s)	39, 61, 164
BstMBI	GATC	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	272
BstXI	CCANNNNNNTGG	2 cut(s)	133, 265
BstYI	RGATCY	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	12, 75
BtrI	CACGTC	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	74, 194
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	2 cut(s)	214, 236
CviJI	RGCY	9 cut(s)	12, 31, 75, 85, 109, 121, 245, 250, 265
CviKI_1	RGCY	9 cut(s)	12, 31, 75, 85, 109, 121, 245, 250, 265
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	2 cut(s)	217, 239
FaiI	YATR	2 cut(s)	215, 237
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	213, 235
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	252
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	12, 75
HapII	CCGG	2 cut(s)	192, 240
HgaI	GACGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	217, 239
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	192, 240
Hpy166II	GTNNAC	3 cut(s)	61, 136, 202
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	3 cut(s)	61, 136, 202
Hpy99I	CGWCG	3 cut(s)	98, 157, 209
HpyCH4IV	ACGT	2 cut(s)	57, 152
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	57, 152
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	217, 239
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	222, 242
LpnPI	CCDG	6 cut(s)	49, 55, 205, 210, 251, 253
MaeII	ACGT	2 cut(s)	57, 152
MalI	GATC	1 cut(s)	274
MboI	GATC	1 cut(s)	272
MflI	RGATCY	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	252
MnlI	CCTC	4 cut(s)	46, 59, 105, 133
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	2 cut(s)	192, 240
MspR9I	CCNGG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	2 cut(s)	217, 239
NlaIV	GGNNCC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	135
OliI	CACNNNNGTG	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 144
Pfl23II	CGTACG	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	230
PspLI	CGTACG	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	74, 194
PsuI	RGATCY	1 cut(s)	272
PsyI	GACNNNGTC	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
RseI	CAYNNNNRTG	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	2 cut(s)	74, 194
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	8 cut(s)	33, 51, 60, 123, 135, 155, 247, 267
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	129
TaiI	ACGT	2 cut(s)	60, 155
TaqI	TCGA	2 cut(s)	105, 225
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.