Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004368.1

Orthogroup ID

OG0004046

Physical Location & Seq

Genomic Coordinates Forward (+)

18017 .. 18841

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004368.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atggcttccggctacgaagtagaggtcacaatttcttccgccaaagacctcaaaaacgtgaattggcgccacggagagctgaagccctacgctgttgtttgggtggatccaaacaataaatgctccacccatgtggacgaatacggtgacgactcgcccacgtgggatgagacgctctcgatcccgttacggggtcccgtcgaggactcgacccttttcgtggacatcatccacgtcaaggcggacgagggcgtcaagccgttgatcgggtccgcaaaactcccgcttagggaggtcctcgatgacgtggggcttggagcaccgtccgttcacaagttgaagctcaagcgcccctcgggtaggccccacgggaagttggaagtcaaagtcacagttcgcccgccccgttaccaagcacctgacccgtatcacgcccccgcgccctacgggtacgggatcgcaccgtcgcagtcgagagactacggcgcacctcagcagtataattaccaatatgcccctcccgcccaaccccaatattaccaaagcagcggcgtcccacaagcagggtacggttacaatcagccatcttacgatcagagtcagtatgggagtggcggggcgtacgggtacgggtcgtcggagaagccgaaggagaagagcaagtttggggtcgggaccggattggctgtgggagccgtagccggagtgttgggtggacttgcaattgctgaaggagtggattacgtggaggacaagattgctgatgatgcagcggagaaagtggaggaggatcttggctatgatgattttggcgatgatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

274

Amino Acids

29.6

Weight (kDa)

4.83

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23950 AT5G23950
fragaria_vesca	FvH4_2g02750 FvH4_2g02750 FvH4_6g31310
malus_domestica	MD01G1205900.v1.1 MD07G1276700.v1.1
prunus_persica	Prupe.2G298800_v2.0.a1
pyrus_communis	pycom01g21560
rosa_chinensis	RchiOBHm_Chr2g0138051 RchiOBHm_Chr6g0247211
rosa_laevigata	RLG00000015211 RLG00000015214 RLG00000019714
rosa_multiflora	Rmu_co8262583.1_g000001 Rmu_sc0004368.1_g000003 Rmu_sc0008250.1_g000006 Rmu_sc0042105.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433600 Rroxscaffold_2G00106560 Rroxscaffold_7G00214240
rosa_rugosa	Rorug02G0349200 Rorug05G0524300
rosa_samantha	Rh2AG396000 Rh2BG410800 Rh2CG382500 Rh6AG038500 Rh6BG033300 Rh6CG034200 Rh6DG031800
rosa_wichuraiana	Rw2G032330 Rw2G032380 Rw6G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	66
AccII	CGCG	1 cut(s)	440
AclWI	GGATC	5 cut(s)	101, 114, 175, 464, 798
AcuI	CTGAAG	2 cut(s)	101, 750
AcvI	CACGTG	1 cut(s)	162
AcyI	GRCGYC	3 cut(s)	67, 252, 552
AfaI	GTAC	4 cut(s)	452, 569, 623, 629
AfiI	CCNNNNNNNGG	8 cut(s)	190, 191, 220, 238, 266, 289, 360, 563
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	2 cut(s)	235, 307
AleI	CACNNNNGTG	1 cut(s)	131
AluBI	AGCT	2 cut(s)	79, 343
AluI	AGCT	2 cut(s)	79, 343
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	2 cut(s)	164, 471
AlwI	GGATC	5 cut(s)	101, 114, 175, 464, 798
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	1 cut(s)	362
ApeKI	GCWGC	2 cut(s)	546, 770
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	4 cut(s)	69, 351, 442, 488
AspS9I	GGNCC	5 cut(s)	194, 270, 295, 363, 675
AsuHPI	GGTGA	1 cut(s)	158
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	4 cut(s)	194, 270, 295, 675
BamHI	GGATCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	66
BbrPI	CACGTG	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	322
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	558, 782
BccI	CCATC	1 cut(s)	592
BceAI	ACGGC	3 cut(s)	244, 499, 680
BcoDI	GTCTC	2 cut(s)	164, 471
BfoI	RGCGCY	2 cut(s)	70, 352
BisI	GCNGC	3 cut(s)	547, 550, 771
BlsI	GCNGC	3 cut(s)	548, 551, 772
Bme18I	GGWCC	4 cut(s)	194, 270, 295, 675
BmeT110I	CYCGRG	1 cut(s)	355
BmgBI	CACGTC	2 cut(s)	235, 307
BmgT120I	GGNCC	5 cut(s)	194, 270, 295, 363, 675
BmiI	GGNNCC	8 cut(s)	68, 108, 195, 196, 271, 365, 676, 694
BmsI	GCATC	1 cut(s)	757
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
Bpu10I	CCTNAGC	2 cut(s)	287, 492
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	2 cut(s)	162, 745
BsaHI	GRCGYC	3 cut(s)	67, 252, 552
BsaJI	CCNNGG	3 cut(s)	70, 354, 367
BsaWI	WCCGGW	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	8 cut(s)	190, 191, 220, 238, 266, 289, 360, 563
BseDI	CCNNGG	3 cut(s)	70, 354, 367
BseGI	GGATG	2 cut(s)	172, 228
BseLI	CCNNNNNNNGG	8 cut(s)	190, 191, 220, 238, 266, 289, 360, 563
BseMII	CTCAG	1 cut(s)	506
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	558, 782
Bsh1236I	CGCG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	364
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	3 cut(s)	9, 678, 702
BsiWI	CGTACG	1 cut(s)	621
BslFI	GGGAC	3 cut(s)	180, 539, 688
BslI	CCNNNNNNNGG	8 cut(s)	190, 191, 220, 238, 266, 289, 360, 563
BsmAI	GTCTC	2 cut(s)	164, 471
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	3 cut(s)	180, 539, 688
BsnI	GGCC	1 cut(s)	364
BsoBI	CYCGRG	1 cut(s)	355
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
BspANI	GGCC	1 cut(s)	364
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	440
BspLI	GGNNCC	8 cut(s)	68, 108, 195, 196, 271, 365, 676, 694
BspPI	GGATC	5 cut(s)	101, 114, 175, 464, 798
BspQI	GCTCTTC	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	66
BssECI	CCNNGG	3 cut(s)	70, 354, 367
BssMI	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
BssNI	GRCGYC	3 cut(s)	67, 252, 552
Bst4CI	ACNGT	5 cut(s)	146, 324, 394, 465, 572
Bst6I	CTCTTC	1 cut(s)	650
BstACI	GRCGYC	3 cut(s)	67, 252, 552
BstBAI	YACGTR	2 cut(s)	162, 745
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	287, 492
BstDSI	CCRYGG	2 cut(s)	70, 367
BstENI	CCTNNNNNAGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	172, 228
BstFNI	CGCG	1 cut(s)	440
BstH2I	RGCGCY	2 cut(s)	70, 352
BstHHI	GCGC	4 cut(s)	69, 351, 442, 488
BstKTI	GATC	6 cut(s)	109, 183, 267, 459, 595, 793
BstMAI	GTCTC	2 cut(s)	164, 471
BstMBI	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	521, 692, 767
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	2 cut(s)	558, 782
BstX2I	RGATCY	2 cut(s)	106, 790
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	2 cut(s)	106, 790
BsuRI	GGCC	1 cut(s)	364
BtgI	CCRYGG	2 cut(s)	70, 367
BtrI	CACGTC	2 cut(s)	235, 307
BtsCI	GGATG	2 cut(s)	172, 228
Cac8I	GCNNGC	1 cut(s)	401
CfoI	GCGC	4 cut(s)	69, 351, 442, 488
Cfr13I	GGNCC	5 cut(s)	194, 270, 295, 363, 675
CseI	GACGC	3 cut(s)	181, 241, 541
Csp6I	GTAC	4 cut(s)	451, 568, 622, 628
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	4 cut(s)	451, 568, 622, 628
DdeI	CTNAG	2 cut(s)	287, 492
DinI	GGCGCC	1 cut(s)	68
DpnI	GATC	6 cut(s)	108, 182, 266, 458, 594, 792
DpnII	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
Eam1104I	CTCTTC	1 cut(s)	650
EarI	CTCTTC	1 cut(s)	650
EciI	GGCGGA	2 cut(s)	28, 257
Eco47I	GGWCC	4 cut(s)	194, 270, 295, 675
Eco57I	CTGAAG	2 cut(s)	101, 750
Eco72I	CACGTG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	358
EcoO109I	RGGNCCY	3 cut(s)	194, 295, 363
EgeI	GGCGCC	1 cut(s)	68
EheI	GGCGCC	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	1 cut(s)	134
FaiI	YATR	5 cut(s)	132, 501, 513, 606, 801
FaqI	GGGAC	3 cut(s)	180, 539, 688
FatI	CATG	1 cut(s)	130
FauI	CCCGC	5 cut(s)	291, 408, 445, 529, 608
Fnu4HI	GCNGC	3 cut(s)	547, 550, 771
FokI	GGATG	2 cut(s)	179, 215
Fsp4HI	GCNGC	3 cut(s)	547, 550, 771
GlaI	GCGC	4 cut(s)	68, 350, 441, 487
GluI	GCNGC	3 cut(s)	547, 550, 771
HaeII	RGCGCY	2 cut(s)	70, 352
HaeIII	GGCC	1 cut(s)	364
HapII	CCGG	3 cut(s)	9, 678, 702
HgaI	GACGC	3 cut(s)	181, 241, 541
HhaI	GCGC	4 cut(s)	69, 351, 442, 488
Hin1I	GRCGYC	3 cut(s)	67, 252, 552
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	4 cut(s)	67, 349, 440, 486
HinP1I	GCGC	4 cut(s)	67, 349, 440, 486
HinfI	GANTC	3 cut(s)	152, 206, 598
HpaII	CCGG	3 cut(s)	9, 678, 702
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	4 cut(s)	136, 223, 331, 716
Hpy188I	TCNGA	2 cut(s)	597, 640
Hpy188III	TCNNGA	3 cut(s)	178, 474, 673
Hpy8I	GTNNAC	4 cut(s)	136, 223, 331, 716
Hpy99I	CGWCG	3 cut(s)	203, 469, 640
HpyAV	CCTTC	2 cut(s)	643, 725
HpyCH4III	ACNGT	5 cut(s)	146, 324, 394, 465, 572
HpyCH4IV	ACGT	5 cut(s)	57, 161, 234, 306, 744
HpyCH4V	TGCA	2 cut(s)	722, 770
HpyF10VI	GCNNNNNNNGC	3 cut(s)	521, 692, 767
HpyF3I	CTNAG	2 cut(s)	287, 492
HpySE526I	ACGT	5 cut(s)	57, 161, 234, 306, 744
Hsp92I	GRCGYC	3 cut(s)	67, 252, 552
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	4 cut(s)	67, 349, 440, 486
KasI	GGCGCC	1 cut(s)	66
KflI	GGGWCCC	1 cut(s)	194
Kzo9I	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
LguI	GCTCTTC	1 cut(s)	650
LmnI	GCTCC	3 cut(s)	128, 317, 692
LpnPI	CCDG	5 cut(s)	22, 432, 549, 691, 715
Lsp1109I	GCAGC	2 cut(s)	558, 782
LweI	GCATC	1 cut(s)	757
MaeII	ACGT	5 cut(s)	57, 161, 234, 306, 744
MaeIII	GTNAC	6 cut(s)	25, 146, 186, 388, 407, 572
MalI	GATC	6 cut(s)	108, 182, 266, 458, 594, 792
MboI	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
MboII	GAAGA	2 cut(s)	27, 667
MfeI	CAATTG	1 cut(s)	723
MflI	RGATCY	2 cut(s)	106, 790
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	4 cut(s)	30, 61, 502, 723
Mly113I	GGCGCC	1 cut(s)	67
MlyI	GAGTC	3 cut(s)	146, 200, 607
MmeI	TCCRAC	2 cut(s)	357, 618
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	2 cut(s)	549, 773
MspI	CCGG	3 cut(s)	9, 678, 702
MunI	CAATTG	1 cut(s)	723
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	521, 692, 767
NarI	GGCGCC	1 cut(s)	67
NdeII	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	8 cut(s)	68, 108, 195, 196, 271, 365, 676, 694
NmuCI	GTSAC	3 cut(s)	25, 146, 388
OliI	CACNNNNGTG	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	2 cut(s)	403, 644
Pfl23II	CGTACG	1 cut(s)	621
PkrI	GCNGC	3 cut(s)	548, 551, 772
PleI	GAGTC	3 cut(s)	146, 200, 606
PluTI	GGCGCC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	162
PmlI	CACGTG	1 cut(s)	162
PpsI	GAGTC	3 cut(s)	146, 200, 606
Ppu21I	YACGTR	2 cut(s)	162, 745
PpuMI	RGGWCCY	2 cut(s)	194, 295
Psp5II	RGGWCCY	2 cut(s)	194, 295
PspCI	CACGTG	1 cut(s)	162
PspLI	CGTACG	1 cut(s)	621
PspN4I	GGNNCC	8 cut(s)	68, 108, 195, 196, 271, 365, 676, 694
PspPI	GGNCC	5 cut(s)	194, 270, 295, 363, 675
PspPPI	RGGWCCY	2 cut(s)	194, 295
PsuI	RGATCY	2 cut(s)	106, 790
RsaI	GTAC	4 cut(s)	452, 569, 623, 629
RsaNI	GTAC	4 cut(s)	451, 568, 622, 628
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	650
SatI	GCNGC	3 cut(s)	547, 550, 771
Sau3AI	GATC	6 cut(s)	106, 180, 264, 456, 592, 790
Sau96I	GGNCC	5 cut(s)	194, 270, 295, 363, 675
SchI	GAGTC	3 cut(s)	146, 200, 607
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	757
SfoI	GGCGCC	1 cut(s)	68
SinI	GGWCC	4 cut(s)	194, 270, 295, 675
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	30, 61, 502, 723
SspDI	GGCGCC	1 cut(s)	66
SspI	AATATT	1 cut(s)	536
TaaI	ACNGT	5 cut(s)	146, 324, 394, 465, 572
TaiI	ACGT	5 cut(s)	60, 164, 237, 309, 747
TaqI	TCGA	5 cut(s)	179, 201, 209, 300, 473
TasI	AATT	4 cut(s)	30, 61, 502, 723
TauI	GCSGC	1 cut(s)	552
TseFI	GTSAC	3 cut(s)	25, 146, 388
TseI	GCWGC	2 cut(s)	546, 770
Tsp45I	GTSAC	3 cut(s)	25, 146, 388
TspGWI	ACGGA	2 cut(s)	87, 316
VpaK11BI	GGWCC	4 cut(s)	194, 270, 295, 675
XagI	CCTNNNNNAGG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.