Rorug05G0524300

Protein kinase C conserved region 2 (CalB)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004046
Physical Location & Seq
Forward (+)
71147230 .. 71150018
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0524300.1

Sequence Viewer

Length: 1056 bp
ATGCTTCTATTCCACCAACATATTTTCCAACTAAACACACTCTTTCCACTACCGTTATTGGTTTTGAAAACAATGGCTTCATCTACAAGATTTTCTTTCTGTTCCGTACTGGTCATTGTCACTTTGGGTGTTCTTGCTGGTTTCACAGGGAGATCTTCTGCTCAACTCTCAACGAATTTCTATTCGGGAAGCTGCCCTAAGGTTTTCAGCACTGTCAAGTCCGTTGTACAGTCCGCGATCTCCAAGGAAAATCGCATGGGGGCTTCTCTCCTTCGCCTTCACTTCCATGACTGCTTCGTCAATGGTTGTGATGGGTCTGTACTCCTAGACGACACTTCTTCTTTCACTGGTGAGAAGACAGCAGGTCCCAACAATAATTCAATTAGGGGATTTGAAGTCATTGATAAGATAAAAACCCAGGTCGAAAAAGCATGCCCCGGCGTCGTTTCGTGTGCTGATATCCTTACCATCGCTGCTCGAGACTCCGTTGTGATTCTTGGAGGGCCAAGCTGGAATGTTAAACTTGGAAGAAGAGATGCCAAGACTACAAGCCTTGCTGCTGCCAATAGTGGTGTCATCCCTCCTCCCACATCTACCCTAAGCAACCTCATCACTAGGTTCCAAGCTGTAGGCCTCTCTACAAGAGACATGGTTGCTTTATCTGGAGCTCACACAATTGGGAAAGCAAGGTGTTCAAGTTTCAGAGCACGCATATACAACGAAACCAACATCGATGCTTCATTTGCAAAGACCAGGCAGAACAGTTGCCCATCAACCACTGGCTCAGGAGACAACAACCTTGCACCTCTAGACACTCAAACTCCAAATAGCTTCGACCCTAAATACTTCCAGAACCTCATCAACAAGAAGGGTCTCCTCCACTCTGATCAAATACTGTTCAATGGTGGATCCACAGACTCATTGGTTAAAACATACAGCGCCAGTGCAAGTACGTTCAATTCTGACTTTGCTAAGGCAATGATCAAGATGGGAGATAATAAACCACTCACTGGGTCTCAGGGTGAGATTAGAAAAAACTGTAGGAAGCGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2

Protein Analysis

351

Amino Acids

37.68

Weight (kDa)

9.58

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 72 - 314 7.9e-89 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 353
AccB7I CCANNNNNTGG 1 cut(s) 1010
AccII CGCG 1 cut(s) 236
AciI CCGC 1 cut(s) 234
AclWI GGATC 2 cut(s) 903, 916
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 4 cut(s) 108, 228, 321, 952
AfiI CCNNNNNNNGG 1 cut(s) 1010
AgsI TTSAA 6 cut(s) 67, 381, 395, 696, 901, 958
AhdI GACNNNNNGTC 1 cut(s) 363
AjnI CCWGG 2 cut(s) 417, 752
AluBI AGCT 5 cut(s) 192, 510, 626, 668, 831
AluI AGCT 5 cut(s) 192, 510, 626, 668, 831
Alw21I GWGCWC 2 cut(s) 670, 709
Alw26I GTCTC 5 cut(s) 474, 639, 783, 878, 1020
AlwI GGATC 2 cut(s) 903, 916
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 2 cut(s) 503, 631
ApeKI GCWGC 4 cut(s) 192, 473, 557, 560
ApoI RAATTY 1 cut(s) 175
AspLEI GCGC 2 cut(s) 941, 1050
AspS9I GGNCC 2 cut(s) 365, 503
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 2 cut(s) 362, 1034
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 198
BamHI GGATCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 670, 709
BbvI GCAGC 4 cut(s) 179, 460, 544, 547
BccI CCATC 4 cut(s) 305, 476, 778, 982
BciT130I CCWGG 2 cut(s) 419, 754
BclI TGATCA 2 cut(s) 886, 981
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 5 cut(s) 474, 639, 783, 878, 1020
BfaI CTAG 3 cut(s) 326, 615, 809
BfmI CTRYAG 2 cut(s) 627, 1039
BfoI RGCGCY 1 cut(s) 942
BfuAI ACCTGC 1 cut(s) 353
BglII AGATCT 1 cut(s) 152
BisI GCNGC 4 cut(s) 193, 474, 558, 561
BlsI GCNGC 4 cut(s) 194, 475, 559, 562
Bme1390I CCNGG 3 cut(s) 419, 438, 754
Bme18I GGWCC 1 cut(s) 365
BmeRI GACNNNNNGTC 1 cut(s) 363
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 2 cut(s) 365, 503
BmiI GGNNCC 3 cut(s) 367, 620, 910
BmrFI CCNGG 3 cut(s) 419, 438, 754
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 2 cut(s) 526, 724
BmuI ACTGGG 1 cut(s) 1020
BpiI GAAGAC 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 684
Bpu10I CCTNAGC 3 cut(s) 599, 784, 972
BpuMI CCSGG 1 cut(s) 438
Bsa29I ATCGAT 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 878, 1020
BsaJI CCNNGG 3 cut(s) 243, 417, 436
BsaXI ACNNNNNCTCC 2 cut(s) 805, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 1010
Bse1I ACTGG 5 cut(s) 114, 352, 784, 942, 1015
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 419, 754
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 243, 417, 436
BseGI GGATG 1 cut(s) 576
BseLI CCNNNNNNNGG 1 cut(s) 1010
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 2 cut(s) 798, 1031
BseNI ACTGG 5 cut(s) 114, 352, 784, 942, 1015
BseRI GAGGAG 2 cut(s) 573, 866
BseXI GCAGC 4 cut(s) 179, 460, 544, 547
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 505, 633
BshVI ATCGAT 1 cut(s) 732
BsiHKAI GWGCWC 2 cut(s) 670, 709
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 1010
BsmAI GTCTC 5 cut(s) 474, 639, 783, 878, 1020
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 2 cut(s) 505, 633
Bso31I GGTCTC 2 cut(s) 878, 1020
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 670, 709
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 5 cut(s) 152, 237, 886, 908, 981
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 505, 633
BspCNI CTCAG 2 cut(s) 797, 1030
BspDI ATCGAT 1 cut(s) 732
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 3 cut(s) 367, 620, 910
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 903, 916
BspTNI GGTCTC 2 cut(s) 878, 1020
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 5 cut(s) 114, 352, 784, 942, 1015
BssECI CCNNGG 3 cut(s) 243, 417, 436
BssMI GATC 5 cut(s) 152, 237, 886, 908, 981
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 2 cut(s) 419, 754
Bst4CI ACNGT 6 cut(s) 54, 214, 231, 764, 897, 1040
Bst6I CTCTTC 1 cut(s) 526
BstACI GRCGYC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 433, 709
BstDEI CTNAG 5 cut(s) 198, 599, 784, 972, 1017
BstF5I GGATG 1 cut(s) 576
BstFNI CGCG 1 cut(s) 236
BstH2I RGCGCY 1 cut(s) 942
BstHHI GCGC 2 cut(s) 941, 1050
BstKTI GATC 5 cut(s) 155, 240, 889, 911, 984
BstMAI GTCTC 5 cut(s) 474, 639, 783, 878, 1020
BstMBI GATC 5 cut(s) 152, 237, 886, 908, 981
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstNI CCWGG 2 cut(s) 419, 754
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 417, 436, 752
BstSFI CTRYAG 2 cut(s) 627, 1039
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 4 cut(s) 179, 460, 544, 547
BstV2I GAAGAC 1 cut(s) 362
BstX2I RGATCY 2 cut(s) 152, 908
BstYI RGATCY 2 cut(s) 152, 908
Bsu15I ATCGAT 1 cut(s) 732
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 2 cut(s) 505, 633
BsuTUI ATCGAT 1 cut(s) 732
BtgZI GCGATG 1 cut(s) 454
BtsCI GGATG 1 cut(s) 576
BtsIMutI CAGTG 5 cut(s) 210, 345, 777, 949, 1008
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 433, 709
CfoI GCGC 2 cut(s) 941, 1050
Cfr13I GGNCC 2 cut(s) 365, 503
ClaI ATCGAT 1 cut(s) 732
CseI GACGC 1 cut(s) 430
Csp6I GTAC 4 cut(s) 107, 227, 320, 951
CviAII CATG 4 cut(s) 256, 287, 432, 649
CviQI GTAC 4 cut(s) 107, 227, 320, 951
DdeI CTNAG 5 cut(s) 198, 599, 784, 972, 1017
DpnI GATC 5 cut(s) 154, 239, 888, 910, 983
DpnII GATC 5 cut(s) 152, 237, 886, 908, 981
DrdI GACNNNNNNGTC 1 cut(s) 296
DriI GACNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 296
Eam1104I CTCTTC 1 cut(s) 526
Eam1105I GACNNNNNGTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 526
Ecl136II GAGCTC 1 cut(s) 668
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 2 cut(s) 878, 1020
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 365
Eco53kI GAGCTC 1 cut(s) 668
Eco81I CCTNAGG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 668
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 417, 752
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 4 cut(s) 259, 290, 435, 652
FaiI YATR 8 cut(s) 21, 257, 288, 433, 650, 713, 715, 934
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FaqI GGGAC 1 cut(s) 351
FatI CATG 4 cut(s) 255, 286, 431, 648
FbaI TGATCA 2 cut(s) 886, 981
Fnu4HI GCNGC 4 cut(s) 193, 474, 558, 561
FokI GGATG 1 cut(s) 563
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 4 cut(s) 193, 474, 558, 561
FspBI CTAG 3 cut(s) 326, 615, 809
GlaI GCGC 2 cut(s) 940, 1049
GluI GCNGC 4 cut(s) 193, 474, 558, 561
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 942
HaeIII GGCC 2 cut(s) 505, 633
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 430
HhaI GCGC 2 cut(s) 941, 1050
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 4 cut(s) 259, 290, 435, 652
Hin6I GCGC 2 cut(s) 939, 1048
HinP1I GCGC 2 cut(s) 939, 1048
HinfI GANTC 3 cut(s) 482, 493, 917
HpaII CCGG 1 cut(s) 438
HphI GGTGA 2 cut(s) 362, 1034
Hpy188I TCNGA 3 cut(s) 704, 886, 964
Hpy188III TCNNGA 7 cut(s) 186, 479, 663, 786, 809, 850, 985
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 281, 287, 862
HpyCH4III ACNGT 6 cut(s) 54, 214, 231, 764, 897, 1040
HpyCH4IV ACGT 1 cut(s) 953
HpyCH4V TGCA 3 cut(s) 746, 803, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 5 cut(s) 198, 599, 784, 972, 1017
HpySE526I ACGT 1 cut(s) 953
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 4 cut(s) 259, 290, 435, 652
HspAI GCGC 2 cut(s) 939, 1048
Ksp22I TGATCA 2 cut(s) 886, 981
Kzo9I GATC 5 cut(s) 152, 237, 886, 908, 981
LmnI GCTCC 1 cut(s) 665
Lsp1109I GCAGC 4 cut(s) 179, 460, 544, 547
LweI GCATC 2 cut(s) 526, 724
MaeI CTAG 3 cut(s) 326, 615, 809
MaeII ACGT 1 cut(s) 953
MaeIII GTNAC 1 cut(s) 118
MalI GATC 5 cut(s) 154, 239, 888, 910, 983
MboI GATC 5 cut(s) 152, 237, 886, 908, 981
MboII GAAGA 5 cut(s) 147, 330, 367, 540, 543
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 152, 908
MhlI GDGCHC 2 cut(s) 670, 709
MluCI AATT 6 cut(s) 175, 376, 381, 675, 958, 1051
MlyI GAGTC 2 cut(s) 476, 911
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 8 cut(s) 494, 591, 594, 617, 644, 816, 866, 887
MseI TTAA 3 cut(s) 519, 927, 1054
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 3 cut(s) 419, 438, 754
MunI CAATTG 1 cut(s) 675
MvaI CCWGG 2 cut(s) 419, 754
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 743
NciI CCSGG 1 cut(s) 438
NdeII GATC 5 cut(s) 152, 237, 886, 908, 981
NlaIII CATG 4 cut(s) 259, 290, 435, 652
NlaIV GGNNCC 3 cut(s) 367, 620, 910
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 435
PaeI GCATGC 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 477
PceI AGGCCT 1 cut(s) 633
PfeI GAWTC 1 cut(s) 493
PflMI CCANNNNNTGG 1 cut(s) 1010
PkrI GCNGC 4 cut(s) 194, 475, 559, 562
PleI GAGTC 2 cut(s) 476, 911
PpsI GAGTC 2 cut(s) 476, 911
PpuMI RGGWCCY 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 670
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 417, 752
PspGI CCWGG 2 cut(s) 417, 752
PspN4I GGNNCC 3 cut(s) 367, 620, 910
PspPI GGNCC 2 cut(s) 365, 503
PspPPI RGGWCCY 1 cut(s) 365
PsuI RGATCY 2 cut(s) 152, 908
RsaI GTAC 4 cut(s) 108, 228, 321, 952
RsaNI GTAC 4 cut(s) 107, 227, 320, 951
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 3 cut(s) 519, 927, 1054
SatI GCNGC 4 cut(s) 193, 474, 558, 561
Sau3AI GATC 5 cut(s) 152, 237, 886, 908, 981
Sau96I GGNCC 2 cut(s) 365, 503
SchI GAGTC 2 cut(s) 476, 911
ScrFI CCNGG 3 cut(s) 419, 438, 754
SduI GDGCHC 2 cut(s) 670, 709
SfaNI GCATC 2 cut(s) 526, 724
SfcI CTRYAG 2 cut(s) 627, 1039
Sfr274I CTCGAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 365
SlaI CTCGAG 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
SphI GCATGC 1 cut(s) 435
Sse9I AATT 6 cut(s) 175, 376, 381, 675, 958, 1051
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 1 cut(s) 234
SspMI CTAG 3 cut(s) 326, 615, 809
SstI GAGCTC 1 cut(s) 670
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 417, 436, 752
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 6 cut(s) 54, 214, 231, 764, 897, 1040
TaiI ACGT 1 cut(s) 956
TaqI TCGA 4 cut(s) 423, 478, 732, 834
TasI AATT 6 cut(s) 175, 376, 381, 675, 958, 1051
TatI WGTACW 2 cut(s) 226, 319
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 3 cut(s) 519, 927, 1054
Tru9I TTAA 3 cut(s) 519, 927, 1054
TscAI CASTG 5 cut(s) 217, 352, 784, 949, 1015
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 4 cut(s) 192, 473, 557, 560
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 2 cut(s) 69, 729
TspGWI ACGGA 3 cut(s) 94, 211, 475
TspRI CASTG 5 cut(s) 217, 352, 784, 949, 1015
Van91I CCANNNNNTGG 1 cut(s) 1010
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 808
XceI RCATGY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 919
XhoI CTCGAG 1 cut(s) 477
XspI CTAG 3 cut(s) 326, 615, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.