Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042105.1

Orthogroup ID

OG0004046

Physical Location & Seq

Genomic Coordinates Forward (+)

15 .. 635

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042105.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgctccacatcgacatcgtccatgccggagctgagcccgacaccaaacagctggtgggatctgctcagctccggctccgcgacgttgtcgatgacgtcggatatgaagaacgctccagccgcactcttcacctcaaaaggccttccggtaggccacagggaaaggtggacgtcaaggttacagtgagggagccgcgctatcgtgtgctggagccgtattatgtgccgccttacggggtcccacctgcaggctctggaggttaccatgctccaccaccaccgccggcttatggcgacccatacgccgcaccaccacagcctccgccggtgtatggtggaacgtacgctgcaccgccttccgggtatccctacaatgcgactccggtggcgtacagtcagccagctcaaccaagttatggtcaagtgcagtacgggcaggaggagaagaagaagagcaagtttggtgggatgggaacgggattggctgtgggggcggtagcgggggcgctgggtgcatttgcgttggctgagggagttgattatgtagaggacaaaattgcagacgacgtgtcggagaaggtggtggataatctgagctactatgatggcgatgacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

206

Amino Acids

22.01

Weight (kDa)

5.19

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23950 AT5G23950
fragaria_vesca	FvH4_2g02750 FvH4_2g02750 FvH4_6g31310
malus_domestica	MD01G1205900.v1.1 MD07G1276700.v1.1
prunus_persica	Prupe.2G298800_v2.0.a1
pyrus_communis	pycom01g21560
rosa_chinensis	RchiOBHm_Chr2g0138051 RchiOBHm_Chr6g0247211
rosa_laevigata	RLG00000015211 RLG00000015214 RLG00000019714
rosa_multiflora	Rmu_co8262583.1_g000001 Rmu_sc0004368.1_g000003 Rmu_sc0008250.1_g000006 Rmu_sc0042105.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433600 Rroxscaffold_2G00106560 Rroxscaffold_7G00214240
rosa_rugosa	Rorug02G0349200 Rorug05G0524300
rosa_samantha	Rh2AG396000 Rh2BG410800 Rh2CG382500 Rh6AG038500 Rh6BG033300 Rh6CG034200 Rh6DG031800
rosa_wichuraiana	Rw2G032330 Rw2G032380 Rw6G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	253
AatII	GACGTC	2 cut(s)	99, 174
Acc36I	ACCTGC	1 cut(s)	253
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccII	CGCG	2 cut(s)	81, 196
AclWI	GGATC	1 cut(s)	67
AcyI	GRCGYC	2 cut(s)	96, 171
AfaI	GTAC	3 cut(s)	344, 392, 431
AfiI	CCNNNNNNNGG	6 cut(s)	233, 248, 290, 332, 359, 416
AflIII	ACRYGT	1 cut(s)	567
AhdI	GACNNNNNGTC	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	568
AluBI	AGCT	5 cut(s)	32, 52, 70, 404, 597
AluI	AGCT	5 cut(s)	32, 52, 70, 404, 597
AlwI	GGATC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	2 cut(s)	140, 152
ApeKI	GCWGC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	198, 508
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	463, 599
BceAI	ACGGC	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	253
BfuI	GTATCC	1 cut(s)	375
BisI	GCNGC	5 cut(s)	121, 194, 227, 306, 348
BlpI	GCTNAGC	2 cut(s)	33, 66
BlsI	GCNGC	5 cut(s)	122, 195, 228, 307, 349
Bme1390I	CCNGG	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	238
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	5 cut(s)	77, 192, 213, 239, 240
BmrFI	CCNGG	1 cut(s)	361
BpmI	CTGGAG	3 cut(s)	100, 230, 276
Bpu10I	CCTNAGC	1 cut(s)	528
Bpu1102I	GCTNAGC	2 cut(s)	33, 66
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	2 cut(s)	96, 171
BsaWI	WCCGGW	2 cut(s)	146, 382
Bsc4I	CCNNNNNNNGG	6 cut(s)	233, 248, 290, 332, 359, 416
Bse118I	RCCGGY	2 cut(s)	283, 325
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	6 cut(s)	233, 248, 290, 332, 359, 416
BseMII	CTCAG	4 cut(s)	24, 80, 519, 584
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	508
BsgI	GTGCAG	2 cut(s)	333, 446
Bsh1236I	CGCG	2 cut(s)	81, 196
BshFI	GGCC	2 cut(s)	142, 154
BsiSI	CCGG	7 cut(s)	27, 73, 147, 284, 326, 360, 383
BsiWI	CGTACG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	6 cut(s)	233, 248, 290, 332, 359, 416
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	142, 154
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	59
Bsp1720I	GCTNAGC	2 cut(s)	33, 66
BspANI	GGCC	2 cut(s)	142, 154
BspCNI	CTCAG	4 cut(s)	25, 79, 520, 585
BspFNI	CGCG	2 cut(s)	81, 196
BspLI	GGNNCC	5 cut(s)	77, 192, 213, 239, 240
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	446
BsrFI	RCCGGY	2 cut(s)	283, 325
BssAI	RCCGGY	2 cut(s)	283, 325
BssMI	GATC	1 cut(s)	59
BssNI	GRCGYC	2 cut(s)	96, 171
Bst4CI	ACNGT	2 cut(s)	184, 395
Bst6I	CTCTTC	2 cut(s)	132, 446
BstACI	GRCGYC	2 cut(s)	96, 171
BstC8I	GCNNGC	3 cut(s)	250, 285, 402
BstDEI	CTNAG	4 cut(s)	33, 66, 528, 593
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	2 cut(s)	81, 196
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	2 cut(s)	198, 508
BstKTI	GATC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	59
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 433, 491, 512
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	2 cut(s)	81, 196
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	59
BstXI	CCANNNNNNTGG	1 cut(s)	52
BstYI	RGATCY	1 cut(s)	59
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	142, 154
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	250, 285, 402
CaiI	CAGNNNCTG	1 cut(s)	254
CfoI	GCGC	2 cut(s)	198, 508
Cfr10I	RCCGGY	2 cut(s)	283, 325
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	343, 391, 430
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	2 cut(s)	23, 266
CviQI	GTAC	3 cut(s)	343, 391, 430
DdeI	CTNAG	4 cut(s)	33, 66, 528, 593
DpnI	GATC	1 cut(s)	61
DpnII	GATC	1 cut(s)	59
DriI	GACNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	132, 446
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	2 cut(s)	132, 446
EciI	GGCGGA	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	142
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	238
Eco91I	GGTNACC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	2 cut(s)	26, 269
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	22, 265
FauI	CCCGC	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	121, 194, 227, 306, 348
FokI	GGATG	1 cut(s)	481
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	121, 194, 227, 306, 348
GlaI	GCGC	2 cut(s)	197, 507
GluI	GCNGC	5 cut(s)	121, 194, 227, 306, 348
GsaI	CCCAGC	1 cut(s)	512
GsuI	CTGGAG	3 cut(s)	100, 230, 276
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	2 cut(s)	142, 154
HapII	CCGG	7 cut(s)	27, 73, 147, 284, 326, 360, 383
HhaI	GCGC	2 cut(s)	198, 508
Hin1I	GRCGYC	2 cut(s)	96, 171
Hin1II	CATG	2 cut(s)	26, 269
Hin6I	GCGC	2 cut(s)	196, 506
HinP1I	GCGC	2 cut(s)	196, 506
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	7 cut(s)	27, 73, 147, 284, 326, 360, 383
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	3 cut(s)	101, 574, 594
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	3 cut(s)	86, 101, 569
HpyAV	CCTTC	3 cut(s)	153, 366, 571
HpyCH4III	ACNGT	2 cut(s)	184, 395
HpyCH4IV	ACGT	5 cut(s)	84, 96, 171, 341, 567
HpyCH4V	TGCA	5 cut(s)	248, 350, 427, 515, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 433, 491, 512
HpyF3I	CTNAG	4 cut(s)	33, 66, 528, 593
HpySE526I	ACGT	5 cut(s)	84, 96, 171, 341, 567
Hsp92I	GRCGYC	2 cut(s)	96, 171
Hsp92II	CATG	2 cut(s)	26, 269
HspAI	GCGC	2 cut(s)	196, 506
KflI	GGGWCCC	1 cut(s)	238
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	59
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	8 cut(s)	9, 29, 75, 81, 119, 190, 211, 274
Lsp1109I	GCAGC	1 cut(s)	334
MaeII	ACGT	5 cut(s)	84, 96, 171, 341, 567
MaeIII	GTNAC	2 cut(s)	178, 260
MalI	GATC	1 cut(s)	61
MboI	GATC	1 cut(s)	59
MboII	GAAGA	5 cut(s)	119, 119, 457, 460, 463
MflI	RGATCY	1 cut(s)	59
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	373
MmeI	TCCRAC	2 cut(s)	79, 552
MnlI	CCTC	7 cut(s)	143, 180, 251, 330, 433, 523, 541
MroNI	GCCGGC	1 cut(s)	283
MspA1I	CMGCKG	1 cut(s)	52
MspI	CCGG	7 cut(s)	27, 73, 147, 284, 326, 360, 383
MspR9I	CCNGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	81, 196
MwoI	GCNNNNNNNGC	4 cut(s)	120, 433, 491, 512
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	1 cut(s)	59
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	26, 269
NlaIV	GGNNCC	5 cut(s)	77, 192, 213, 239, 240
PaqCI	CACCTGC	1 cut(s)	253
PceI	AGGCCT	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	446
PdiI	GCCGGC	1 cut(s)	285
Pfl23II	CGTACG	1 cut(s)	342
PflFI	GACNNNGTC	2 cut(s)	17, 86
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	5 cut(s)	122, 195, 228, 307, 349
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	508
PspLI	CGTACG	1 cut(s)	342
PspN4I	GGNNCC	5 cut(s)	77, 192, 213, 239, 240
PspPI	GGNCC	1 cut(s)	238
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	59
PsyI	GACNNNGTC	2 cut(s)	17, 86
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	3 cut(s)	344, 392, 431
RsaNI	GTAC	3 cut(s)	343, 391, 430
SapI	GCTCTTC	1 cut(s)	446
SatI	GCNGC	5 cut(s)	121, 194, 227, 306, 348
Sau3AI	GATC	1 cut(s)	59
Sau96I	GGNCC	1 cut(s)	238
SbfI	CCTGCAGG	1 cut(s)	250
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	361
SdaI	CCTGCAGG	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	246
SgrAI	CRCCGGYG	1 cut(s)	325
SinI	GGWCC	1 cut(s)	238
Sse8387I	CCTGCAGG	1 cut(s)	250
Sse9I	AATT	1 cut(s)	555
SseBI	AGGCCT	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	142
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	184, 395
TaiI	ACGT	5 cut(s)	87, 99, 174, 344, 570
TaqI	TCGA	2 cut(s)	12, 90
TasI	AATT	1 cut(s)	555
TauI	GCSGC	4 cut(s)	123, 196, 229, 308
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	189
Tth111I	GACNNNGTC	2 cut(s)	17, 86
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
ZraI	GACGTC	2 cut(s)	97, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.