Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008250.1

Orthogroup ID

OG0004046

Physical Location & Seq

Genomic Coordinates Forward (+)

17004 .. 17885

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008250.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atggcgtcaggccacgaagtccaagtgaagctctcctccgccagagacctcaagaacgtgaactggagacacggccccgtcaagccgtacgccgtcgggtgggtcgagccgaggaacaagctctccaccaaggtggacgaggatggcgacacgtcgcccgaatgggacgagacgctgacaatccctatccccggtcctgtcaacgacgacaccatgctccacatcgacatcgtccatgccggagctgagcccgacaccaaacagctggtgggatctgctcagctccggctccgcgacgttgtcgatgacgtcggatatgaacaacgcgccagccgcactcttcacctcaaaaggccttccggtaggccacagggaaaggtggacgtcaaggttacagtgagggagccgcgctatcttgtgccggagccgtattatgtgccgccttaccgggtcccgcctgcaggctctggaggttaccatgctccaccaccaccgccggcttatggcgacccatacgccgcaccaccacagcctccgccggtgtatggtggaacgtacgctgcaccgccttccgggtatccctacaatgcgactccggtggcgtacagtcagccagctcaaccaagttatggtcaagtgcagtacgggcaggaggagaagaagaagagcaagtttggtgggatgggaacgggattggctgtgggggcggtagcgggggcgctgggtgcatttgcgttggctgagggagttgattatgtagaggacaaaattgcagacgacgtgtcggagaaggtggtggatagacctgtaaatggaccggattttgatccggacccgctccagatccgtgactattggacgggtttggatcgaacattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

293

Amino Acids

31.78

Weight (kDa)

5.3

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23950 AT5G23950
fragaria_vesca	FvH4_2g02750 FvH4_2g02750 FvH4_6g31310
malus_domestica	MD01G1205900.v1.1 MD07G1276700.v1.1
prunus_persica	Prupe.2G298800_v2.0.a1
pyrus_communis	pycom01g21560
rosa_chinensis	RchiOBHm_Chr2g0138051 RchiOBHm_Chr6g0247211
rosa_laevigata	RLG00000015211 RLG00000015214 RLG00000019714
rosa_multiflora	Rmu_co8262583.1_g000001 Rmu_sc0004368.1_g000003 Rmu_sc0008250.1_g000006 Rmu_sc0042105.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433600 Rroxscaffold_2G00106560 Rroxscaffold_7G00214240
rosa_rugosa	Rorug02G0349200 Rorug05G0524300
rosa_samantha	Rh2AG396000 Rh2BG410800 Rh2CG382500 Rh6AG038500 Rh6BG033300 Rh6CG034200 Rh6DG031800
rosa_wichuraiana	Rw2G032330 Rw2G032380 Rw6G003310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	312, 387
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	838
AccII	CGCG	3 cut(s)	294, 327, 409
AccIII	TCCGGA	1 cut(s)	829
AclWI	GGATC	4 cut(s)	280, 821, 838, 876
AcyI	GRCGYC	3 cut(s)	5, 309, 384
AfaI	GTAC	4 cut(s)	89, 557, 605, 644
AfiI	CCNNNNNNNGG	8 cut(s)	99, 191, 461, 503, 545, 572, 629, 812
AflIII	ACRYGT	2 cut(s)	150, 780
AhdI	GACNNNNNGTC	1 cut(s)	781
AjiI	CACGTC	2 cut(s)	153, 781
AleI	CACNNNNGTG	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	6 cut(s)	31, 121, 245, 265, 283, 617
AluI	AGCT	6 cut(s)	31, 121, 245, 265, 283, 617
Alw26I	GTCTC	3 cut(s)	39, 61, 164
AlwI	GGATC	4 cut(s)	280, 821, 838, 876
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	829
AoxI	GGCC	4 cut(s)	10, 73, 353, 365
ApeKI	GCWGC	1 cut(s)	560
AspLEI	GCGC	3 cut(s)	329, 411, 721
AspS9I	GGNCC	5 cut(s)	74, 194, 451, 815, 832
AsuC2I	CCSGG	3 cut(s)	192, 449, 574
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	4 cut(s)	194, 451, 815, 832
BanII	GRGCYC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	2 cut(s)	137, 676
BceAI	ACGGC	4 cut(s)	70, 77, 88, 412
BciVI	GTATCC	1 cut(s)	588
BcnI	CCSGG	3 cut(s)	192, 449, 574
BcoDI	GTCTC	3 cut(s)	39, 61, 164
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	722
BfuI	GTATCC	1 cut(s)	588
BisI	GCNGC	5 cut(s)	334, 407, 440, 519, 561
BlpI	GCTNAGC	2 cut(s)	246, 279
BlsI	GCNGC	5 cut(s)	335, 408, 441, 520, 562
Bme1390I	CCNGG	3 cut(s)	192, 449, 574
Bme18I	GGWCC	4 cut(s)	194, 451, 815, 832
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmgBI	CACGTC	2 cut(s)	153, 781
BmgT120I	GGNCC	5 cut(s)	74, 194, 451, 815, 832
BmiI	GGNNCC	7 cut(s)	76, 290, 405, 426, 452, 453, 834
BmrFI	CCNGG	3 cut(s)	192, 449, 574
BpmI	CTGGAG	3 cut(s)	85, 489, 824
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	2 cut(s)	246, 279
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	3 cut(s)	192, 449, 574
BsaBI	GATNNNNATC	1 cut(s)	825
BsaHI	GRCGYC	3 cut(s)	5, 309, 384
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	110, 129, 190
BsaWI	WCCGGW	4 cut(s)	359, 595, 817, 829
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	8 cut(s)	99, 191, 461, 503, 545, 572, 629, 812
Bse118I	RCCGGY	2 cut(s)	496, 538
Bse1I	ACTGG	1 cut(s)	68
Bse8I	GATNNNNATC	1 cut(s)	825
BseAI	TCCGGA	1 cut(s)	829
BseDI	CCNNGG	3 cut(s)	110, 129, 190
BseGI	GGATG	2 cut(s)	148, 687
BseJI	GATNNNNATC	1 cut(s)	825
BseLI	CCNNNNNNNGG	8 cut(s)	99, 191, 461, 503, 545, 572, 629, 812
BseMII	CTCAG	3 cut(s)	237, 293, 732
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	25, 668
BseXI	GCAGC	1 cut(s)	547
BseYI	CCCAGC	1 cut(s)	721
BsgI	GTGCAG	2 cut(s)	546, 659
Bsh1236I	CGCG	3 cut(s)	294, 327, 409
BshFI	GGCC	4 cut(s)	12, 75, 355, 367
BsiWI	CGTACG	2 cut(s)	87, 555
BslFI	GGGAC	2 cut(s)	179, 437
BslI	CCNNNNNNNGG	8 cut(s)	99, 191, 461, 503, 545, 572, 629, 812
BsmAI	GTCTC	3 cut(s)	39, 61, 164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	179, 437
BsnI	GGCC	4 cut(s)	12, 75, 355, 367
Bso31I	GGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	829
Bsp143I	GATC	4 cut(s)	272, 826, 843, 868
Bsp1720I	GCTNAGC	2 cut(s)	246, 279
BspANI	GGCC	4 cut(s)	12, 75, 355, 367
BspCNI	CTCAG	3 cut(s)	238, 292, 733
BspEI	TCCGGA	1 cut(s)	829
BspFNI	CGCG	3 cut(s)	294, 327, 409
BspLI	GGNNCC	7 cut(s)	76, 290, 405, 426, 452, 453, 834
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	4 cut(s)	280, 821, 838, 876
BspQI	GCTCTTC	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	838
BsrFI	RCCGGY	2 cut(s)	496, 538
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	2 cut(s)	496, 538
BssECI	CCNNGG	3 cut(s)	110, 129, 190
BssMI	GATC	4 cut(s)	272, 826, 843, 868
BssNI	GRCGYC	3 cut(s)	5, 309, 384
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	397, 608
Bst6I	CTCTTC	2 cut(s)	345, 659
BstACI	GRCGYC	3 cut(s)	5, 309, 384
BstC8I	GCNNGC	5 cut(s)	331, 459, 463, 498, 615
BstDEI	CTNAG	3 cut(s)	246, 279, 741
BstEII	GGTNACC	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	148, 687
BstFNI	CGCG	3 cut(s)	294, 327, 409
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	3 cut(s)	329, 411, 721
BstKTI	GATC	4 cut(s)	275, 829, 846, 871
BstMAI	GTCTC	3 cut(s)	39, 61, 164
BstMBI	GATC	4 cut(s)	272, 826, 843, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	333, 646, 704, 725
BstPI	GGTNACC	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	190, 447, 572
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	3 cut(s)	294, 327, 409
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	2 cut(s)	272, 843
BstXI	CCANNNNNNTGG	2 cut(s)	133, 265
BstYI	RGATCY	2 cut(s)	272, 843
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	12, 75, 355, 367
BtrI	CACGTC	2 cut(s)	153, 781
BtsCI	GGATG	2 cut(s)	148, 687
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	5 cut(s)	331, 459, 463, 498, 615
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	3 cut(s)	329, 411, 721
Cfr10I	RCCGGY	2 cut(s)	496, 538
Cfr13I	GGNCC	5 cut(s)	74, 194, 451, 815, 832
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	88, 556, 604, 643
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	3 cut(s)	214, 236, 479
CviQI	GTAC	4 cut(s)	88, 556, 604, 643
DdeI	CTNAG	3 cut(s)	246, 279, 741
DpnI	GATC	4 cut(s)	274, 828, 845, 870
DpnII	GATC	4 cut(s)	272, 826, 843, 868
DriI	GACNNNNNGTC	1 cut(s)	781
Eam1104I	CTCTTC	2 cut(s)	345, 659
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	2 cut(s)	345, 659
EciI	GGCGGA	2 cut(s)	28, 525
Eco130I	CCWWGG	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	39
Eco47I	GGWCC	4 cut(s)	194, 451, 815, 832
Eco91I	GGTNACC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	3 cut(s)	217, 239, 482
FaqI	GGGAC	2 cut(s)	179, 437
FatI	CATG	3 cut(s)	213, 235, 478
FauI	CCCGC	3 cut(s)	462, 706, 843
Fnu4HI	GCNGC	5 cut(s)	334, 407, 440, 519, 561
FokI	GGATG	2 cut(s)	155, 694
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	5 cut(s)	334, 407, 440, 519, 561
GlaI	GCGC	3 cut(s)	328, 410, 720
GluI	GCNGC	5 cut(s)	334, 407, 440, 519, 561
GsaI	CCCAGC	1 cut(s)	725
GsuI	CTGGAG	3 cut(s)	85, 489, 824
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	4 cut(s)	12, 75, 355, 367
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	329, 411, 721
Hin1I	GRCGYC	3 cut(s)	5, 309, 384
Hin1II	CATG	3 cut(s)	217, 239, 482
Hin6I	GCGC	3 cut(s)	327, 409, 719
HinP1I	GCGC	3 cut(s)	327, 409, 719
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	592
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	4 cut(s)	61, 136, 202, 382
Hpy188I	TCNGA	2 cut(s)	314, 787
Hpy188III	TCNNGA	4 cut(s)	52, 468, 830, 841
Hpy8I	GTNNAC	4 cut(s)	61, 136, 202, 382
Hpy99I	CGWCG	6 cut(s)	98, 157, 209, 299, 314, 782
HpyAV	CCTTC	3 cut(s)	366, 579, 784
HpyCH4III	ACNGT	2 cut(s)	397, 608
HpyCH4IV	ACGT	7 cut(s)	57, 152, 297, 309, 384, 554, 780
HpyCH4V	TGCA	5 cut(s)	461, 563, 640, 728, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	333, 646, 704, 725
HpyF3I	CTNAG	3 cut(s)	246, 279, 741
HpySE526I	ACGT	7 cut(s)	57, 152, 297, 309, 384, 554, 780
Hsp92I	GRCGYC	3 cut(s)	5, 309, 384
Hsp92II	CATG	3 cut(s)	217, 239, 482
HspAI	GCGC	3 cut(s)	327, 409, 719
KflI	GGGWCCC	1 cut(s)	451
Kpn2I	TCCGGA	1 cut(s)	829
KroI	GCCGGC	1 cut(s)	496
KroNI	GCCGGC	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	272, 826, 843, 868
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	8 cut(s)	222, 242, 288, 294, 403, 424, 487, 843
Lsp1109I	GCAGC	1 cut(s)	547
MaeII	ACGT	7 cut(s)	57, 152, 297, 309, 384, 554, 780
MaeIII	GTNAC	3 cut(s)	391, 473, 848
MalI	GATC	4 cut(s)	274, 828, 845, 870
MbiI	CCGCTC	1 cut(s)	838
MboI	GATC	4 cut(s)	272, 826, 843, 868
MboII	GAAGA	4 cut(s)	332, 670, 673, 676
MflI	RGATCY	2 cut(s)	272, 843
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	768
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	2 cut(s)	292, 765
MroI	TCCGGA	1 cut(s)	829
MroNI	GCCGGC	1 cut(s)	496
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	265
MspR9I	CCNGG	3 cut(s)	192, 449, 574
MvnI	CGCG	3 cut(s)	294, 327, 409
MwoI	GCNNNNNNNGC	4 cut(s)	333, 646, 704, 725
NaeI	GCCGGC	1 cut(s)	498
NciI	CCSGG	3 cut(s)	192, 449, 574
NdeII	GATC	4 cut(s)	272, 826, 843, 868
NgoMIV	GCCGGC	1 cut(s)	496
NlaIII	CATG	3 cut(s)	217, 239, 482
NlaIV	GGNNCC	7 cut(s)	76, 290, 405, 426, 452, 453, 834
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	848
OliI	CACNNNNGTG	1 cut(s)	131
PceI	AGGCCT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 144
PdiI	GCCGGC	1 cut(s)	498
Pfl23II	CGTACG	2 cut(s)	87, 555
PflFI	GACNNNGTC	2 cut(s)	230, 299
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	5 cut(s)	335, 408, 441, 520, 562
PleI	GAGTC	1 cut(s)	586
PpsI	GAGTC	1 cut(s)	586
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
PspEI	GGTNACC	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	721
PspLI	CGTACG	2 cut(s)	87, 555
PspN4I	GGNNCC	7 cut(s)	76, 290, 405, 426, 452, 453, 834
PspPI	GGNCC	5 cut(s)	74, 194, 451, 815, 832
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	272, 843
PsyI	GACNNNGTC	2 cut(s)	230, 299
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	4 cut(s)	89, 557, 605, 644
RsaNI	GTAC	4 cut(s)	88, 556, 604, 643
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	659
SatI	GCNGC	5 cut(s)	334, 407, 440, 519, 561
Sau3AI	GATC	4 cut(s)	272, 826, 843, 868
Sau96I	GGNCC	5 cut(s)	74, 194, 451, 815, 832
SbfI	CCTGCAGG	1 cut(s)	463
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	3 cut(s)	192, 449, 574
SdaI	CCTGCAGG	1 cut(s)	463
SduI	GDGCHC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	459
SgrAI	CRCCGGYG	1 cut(s)	538
SinI	GGWCC	4 cut(s)	194, 451, 815, 832
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse8387I	CCTGCAGG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	768
SseBI	AGGCCT	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	3 cut(s)	190, 447, 572
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	397, 608
TaiI	ACGT	7 cut(s)	60, 155, 300, 312, 387, 557, 783
TaqI	TCGA	4 cut(s)	105, 225, 303, 871
TasI	AATT	1 cut(s)	768
TauI	GCSGC	4 cut(s)	336, 409, 442, 521
TscAI	CASTG	1 cut(s)	402
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	1 cut(s)	836
TspRI	CASTG	1 cut(s)	402
Tth111I	GACNNNGTC	2 cut(s)	230, 299
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	4 cut(s)	194, 451, 815, 832
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
ZraI	GACGTC	2 cut(s)	310, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.