Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286077.1

Orthogroup ID

OG0003122

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 591

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggcaaccgcagcccaagatagcgctccagtgctcgacacctctgggcaggctcttcaatccggtgtagactactacatcaaaccagccatcaccgacaacggcggccgtttcactttgatcgaccgaaacgactcgtgtcctttctatgctggtcaagaaaacacctcgggccccgagggcttcccggtgacctttgcgcccttcgcagagggcgagacggtggtgagggagactagggatcagaagatcacattctctgcattcacaatctgtgtgcagtcaacggcatggaaggtcggtgagactcagtcagagactcagaggagattgattgtcaccggaattgatcaaaacgaaggccttccaggtccggccagaaactacttcaggattaataaacaggcagatcatgatggcgtctacaacctgcagtggtgccctacagaagtgtgcccgacatgcaggttcatttgcggagatgtgggtgctttggttgagaatgacaagaggctgttggccttggatggttctgtgcttcctgttgtcttcgagaaggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0015066 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kunitz_legume

Protein Analysis

187

Amino Acids

20.4

Weight (kDa)

4.64

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73260
fragaria_vesca	FvH4_3g17480 FvH4_3g17480 FvH4_3g17790
malus_domestica	MD03G1251400.v1.1 MD11G1269300.v1.1 MD11G1269400.v1.1
prunus_persica	Prupe.4G155200_v2.0.a1
pyrus_communis	pycom03g19880 pycom03g19890
rosa_chinensis	RchiOBHm_Chr5g0029031 RchiOBHm_Chr5g0029081
rosa_laevigata	RLG00000033135 RLG00000033138 RLG00000033181
rosa_multiflora	Rmu_co8286077.1_g000001 Rmu_sc0001608.1_g000003 Rmu_sc0004324.1_g000002 Rmu_sc0010962.1_g000005 Rmu_sc0026501.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050360
rosa_rugosa	Rorug05G0112300 Rorug05G0112400
rosa_samantha	Rh5AG204500 Rh5AG204600 Rh5AG207300 Rh5BG202800 Rh5BG203000 Rh5BG206100 Rh5CG224100 Rh5CG228200 Rh5DG206700 Rh5DG206800 Rh5DG209800
rosa_wichuraiana	Rw5G018540 Rw5G018560 Rw5G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	438, 456
AccB1I	GGYRCC	1 cut(s)	438
AccI	GTMKAC	2 cut(s)	69, 423
AciI	CCGC	3 cut(s)	9, 105, 477
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	2 cut(s)	106, 375
AcuI	CTGAAG	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	420
AfeI	AGCGCT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	59
AjnI	CCWGG	1 cut(s)	367
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	4 cut(s)	212, 227, 299, 311
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	2 cut(s)	169, 176
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	5 cut(s)	106, 172, 361, 375, 519
ApaI	GGGCCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	11
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	2 cut(s)	26, 202
AspS9I	GGNCC	3 cut(s)	172, 173, 371
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	5 cut(s)	85, 202, 238, 314, 331
AvaI	CYCGRG	2 cut(s)	169, 176
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	3 cut(s)	176, 443, 458
BanI	GGYRCC	1 cut(s)	438
BanII	GRGCYC	1 cut(s)	176
BauI	CACGAG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	541
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	3 cut(s)	98, 410, 521
BceAI	ACGGC	3 cut(s)	93, 118, 303
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	4 cut(s)	212, 227, 299, 311
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	2 cut(s)	431, 444
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	2 cut(s)	438, 456
BglI	GCCNNNNNGGC	1 cut(s)	180
BisI	GCNGC	2 cut(s)	12, 106
BlsI	GCNGC	2 cut(s)	13, 107
Bme1390I	CCNGG	2 cut(s)	188, 369
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	2 cut(s)	169, 176
BmgT120I	GGNCC	3 cut(s)	172, 173, 371
BmiI	GGNNCC	3 cut(s)	174, 175, 440
BmrFI	CCNGG	2 cut(s)	188, 369
BoxI	GACNNNNGTC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	541
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	168, 177, 522
BsaWI	WCCGGW	2 cut(s)	62, 341
Bse1I	ACTGG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	168, 177, 522
BseGI	GGATG	1 cut(s)	532
BseMII	CTCAG	2 cut(s)	323, 335
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	340
BseSI	GKGCMC	3 cut(s)	176, 443, 458
BseX3I	CGGCCG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	299
Bsh1285I	CGRYCG	2 cut(s)	109, 127
BshFI	GGCC	5 cut(s)	108, 174, 363, 377, 521
BshNI	GGYRCC	1 cut(s)	438
BsiEI	CGRYCG	2 cut(s)	109, 127
BsiHKAI	GWGCWC	1 cut(s)	36
BsiHKCI	CYCGRG	2 cut(s)	169, 176
BsiSI	CCGG	4 cut(s)	63, 188, 342, 374
BsmAI	GTCTC	4 cut(s)	212, 227, 299, 311
BsmBI	CGTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	5 cut(s)	108, 174, 363, 377, 521
BsoBI	CYCGRG	2 cut(s)	169, 176
Bsp120I	GGGCCC	1 cut(s)	172
Bsp1286I	GDGCHC	4 cut(s)	36, 176, 443, 458
Bsp143I	GATC	5 cut(s)	120, 241, 249, 349, 409
BspACI	CCGC	3 cut(s)	9, 105, 477
BspANI	GGCC	5 cut(s)	108, 174, 363, 377, 521
BspCNI	CTCAG	2 cut(s)	322, 334
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	3 cut(s)	174, 175, 440
BspMAI	CTGCAG	1 cut(s)	435
BspMI	ACCTGC	2 cut(s)	438, 456
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	168, 177, 522
BssMI	GATC	5 cut(s)	120, 241, 249, 349, 409
BssNI	GRCGYC	1 cut(s)	420
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	522
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	60
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	309, 321
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	532
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 202
BstKTI	GATC	5 cut(s)	123, 244, 252, 352, 412
BstMAI	GTCTC	4 cut(s)	212, 227, 299, 311
BstMBI	GATC	5 cut(s)	120, 241, 249, 349, 409
BstMCI	CGRYCG	2 cut(s)	109, 127
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 180, 206, 462
BstNI	CCWGG	1 cut(s)	369
BstNSI	RCATGY	1 cut(s)	465
BstPAI	GACNNNNGTC	1 cut(s)	138
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	2 cut(s)	186, 367
BstSFI	CTRYAG	2 cut(s)	431, 444
BstSLI	GKGCMC	3 cut(s)	176, 443, 458
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	541
BstZI	CGGCCG	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	108, 174, 363, 377, 521
BtsCI	GGATG	1 cut(s)	532
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	2 cut(s)	36, 440
BveI	ACCTGC	2 cut(s)	438, 456
Cac8I	GCNNGC	1 cut(s)	51
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	2 cut(s)	26, 202
Cfr13I	GGNCC	3 cut(s)	172, 173, 371
CseI	GACGC	1 cut(s)	409
CviAII	CATG	3 cut(s)	291, 413, 462
DdeI	CTNAG	2 cut(s)	309, 321
DpnI	GATC	5 cut(s)	122, 243, 251, 351, 411
DpnII	GATC	5 cut(s)	120, 241, 249, 349, 409
EaeI	YGGCCR	2 cut(s)	106, 375
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	371
Eco47III	AGCGCT	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	373
Eco88I	CYCGRG	2 cut(s)	169, 176
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	3 cut(s)	294, 416, 465
FaiI	YATR	4 cut(s)	150, 292, 414, 463
FatI	CATG	3 cut(s)	290, 412, 461
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	2 cut(s)	69, 423
Fnu4HI	GCNGC	2 cut(s)	12, 106
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	12, 106
FspBI	CTAG	1 cut(s)	237
GlaI	GCGC	2 cut(s)	25, 201
GluI	GCNGC	2 cut(s)	12, 106
GsuI	CTGGAG	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	5 cut(s)	108, 174, 363, 377, 521
HapII	CCGG	4 cut(s)	63, 188, 342, 374
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	26, 202
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	3 cut(s)	294, 416, 465
Hin6I	GCGC	2 cut(s)	24, 200
HinP1I	GCGC	2 cut(s)	24, 200
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	134, 307, 319
HpaII	CCGG	4 cut(s)	63, 188, 342, 374
HphI	GGTGA	5 cut(s)	85, 202, 238, 314, 331
Hpy166II	GTNNAC	3 cut(s)	70, 285, 424
Hpy188I	TCNGA	3 cut(s)	246, 316, 324
Hpy188III	TCNNGA	4 cut(s)	158, 391, 413, 553
Hpy8I	GTNNAC	3 cut(s)	70, 285, 424
HpyAV	CCTTC	5 cut(s)	214, 289, 353, 374, 550
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	4 cut(s)	263, 280, 433, 465
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 180, 206, 462
HpyF3I	CTNAG	2 cut(s)	309, 321
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	294, 416, 465
HspAI	GCGC	2 cut(s)	24, 200
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	120, 241, 249, 349, 409
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	31
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	190, 337
MalI	GATC	5 cut(s)	122, 243, 251, 351, 411
MboI	GATC	5 cut(s)	120, 241, 249, 349, 409
MboII	GAAGA	3 cut(s)	47, 259, 541
MhlI	GDGCHC	4 cut(s)	36, 176, 443, 458
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	3 cut(s)	128, 301, 313
MnlI	CCTC	7 cut(s)	52, 172, 178, 205, 222, 318, 504
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	396, 562
MspI	CCGG	4 cut(s)	63, 188, 342, 374
MspR9I	CCNGG	2 cut(s)	188, 369
Mva1269I	GAATGC	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	4 cut(s)	11, 180, 206, 462
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	5 cut(s)	120, 241, 249, 349, 409
NlaIII	CATG	3 cut(s)	294, 416, 465
NlaIV	GGNNCC	3 cut(s)	174, 175, 440
NmuCI	GTSAC	2 cut(s)	190, 337
NspI	RCATGY	1 cut(s)	465
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 213
PctI	GAATGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	363
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	13, 107
PleI	GAGTC	3 cut(s)	128, 301, 313
PpsI	GAGTC	3 cut(s)	128, 301, 313
PshAI	GACNNNNGTC	1 cut(s)	138
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	367
PspEI	GGTNACC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	3 cut(s)	174, 175, 440
PspOMI	GGGCCC	1 cut(s)	172
PspPI	GGNCC	3 cut(s)	172, 173, 371
PstI	CTGCAG	1 cut(s)	435
PsyI	GACNNNGTC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	396, 562
SatI	GCNGC	2 cut(s)	12, 106
Sau3AI	GATC	5 cut(s)	120, 241, 249, 349, 409
Sau96I	GGNCC	3 cut(s)	172, 173, 371
SchI	GAGTC	3 cut(s)	128, 301, 313
ScrFI	CCNGG	2 cut(s)	188, 369
SduI	GDGCHC	4 cut(s)	36, 176, 443, 458
SetI	ASST	7 cut(s)	44, 170, 197, 300, 373, 432, 470
SfcI	CTRYAG	2 cut(s)	431, 444
SinI	GGWCC	1 cut(s)	371
Sse9I	AATT	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	9, 105, 477
SspMI	CTAG	1 cut(s)	237
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	186, 367
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	3 cut(s)	36, 123, 552
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	345
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	396, 562
Tru9I	TTAA	2 cut(s)	396, 562
TscAI	CASTG	2 cut(s)	36, 440
TseFI	GTSAC	2 cut(s)	190, 337
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	190, 337
TspDTI	ATGAA	1 cut(s)	460
TspRI	CASTG	2 cut(s)	36, 440
Tth111I	GACNNNGTC	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	396
XceI	RCATGY	1 cut(s)	465
XmiI	GTMKAC	2 cut(s)	69, 423
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.