Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010962.1

Orthogroup ID

OG0003122

Physical Location & Seq

Genomic Coordinates Forward (+)

23388 .. 23945

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010962.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggcaaccgtagcccaagatagcgctccggtgctcgacacctcagggcaggctcttcaatccggtgtagactactacatcaaacccgccatcaccgacaacggcggccgtttcactttgatcaaccgaaacgactcctgtcctttgtatgttggtcaagaaaacacctcaggccccaagggctacccggtgaccttcgcgcctttcgcagagggtgagacggtggtaagagtgggtagggatcagaagatcacattctctgcatccacaatctgtgtgcaatcgactgcatggaaggtgggtgagactcagtccgagacccaaaggagattgattgtcaccggaattgatgaaaacgaaagccgtcctaccggaaactacttcaagattaacaaacaggcagatcttgatggcatttacaatttcgaatggtgccctactgaagtgtgcccgatttgtaagttcatctgctcagatgtgggtgctttggttgagaatgacaagaggttgttggccttggatggttctgtgcttcctgttgtctttgagagggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0015066 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kunitz_legume

Protein Analysis

185

Amino Acids

20.2

Weight (kDa)

4.72

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73260
fragaria_vesca	FvH4_3g17480 FvH4_3g17480 FvH4_3g17790
malus_domestica	MD03G1251400.v1.1 MD11G1269300.v1.1 MD11G1269400.v1.1
prunus_persica	Prupe.4G155200_v2.0.a1
pyrus_communis	pycom03g19880 pycom03g19890
rosa_chinensis	RchiOBHm_Chr5g0029031 RchiOBHm_Chr5g0029081
rosa_laevigata	RLG00000033135 RLG00000033138 RLG00000033181
rosa_multiflora	Rmu_co8286077.1_g000001 Rmu_sc0001608.1_g000003 Rmu_sc0004324.1_g000002 Rmu_sc0010962.1_g000005 Rmu_sc0026501.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050360
rosa_rugosa	Rorug05G0112300 Rorug05G0112400
rosa_samantha	Rh5AG204500 Rh5AG204600 Rh5AG207300 Rh5BG202800 Rh5BG203000 Rh5BG206100 Rh5CG224100 Rh5CG228200 Rh5DG206700 Rh5DG206800 Rh5DG209800
rosa_wichuraiana	Rw5G018540 Rw5G018560 Rw5G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	87, 105
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	462
AfeI	AGCGCT	1 cut(s)	25
AgsI	TTSAA	2 cut(s)	59, 385
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	3 cut(s)	212, 299, 311
AlwI	GGATC	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	3 cut(s)	106, 172, 513
AspLEI	GCGC	2 cut(s)	26, 202
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	5 cut(s)	85, 202, 227, 314, 331
AsuII	TTCGAA	1 cut(s)	426
AxyI	CCTNAGG	2 cut(s)	43, 169
BaeGI	GKGCMC	2 cut(s)	437, 452
BanI	GGYRCC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	3 cut(s)	98, 404, 515
BceAI	ACGGC	3 cut(s)	93, 118, 348
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	3 cut(s)	212, 299, 311
BfoI	RGCGCY	1 cut(s)	27
BglI	GCCNNNNNGGC	1 cut(s)	180
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	175, 434
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	272
BoxI	GACNNNNGTC	1 cut(s)	138
Bpu14I	TTCGAA	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	177, 516
BsaWI	WCCGGW	4 cut(s)	28, 62, 341, 371
Bse21I	CCTNAGG	2 cut(s)	43, 169
BseDI	CCNNGG	2 cut(s)	177, 516
BseGI	GGATG	2 cut(s)	263, 526
BseMII	CTCAG	4 cut(s)	57, 183, 323, 486
BseSI	GKGCMC	2 cut(s)	437, 452
BseX3I	CGGCCG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	108, 174, 515
BshNI	GGYRCC	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	5 cut(s)	29, 63, 188, 342, 372
BsmAI	GTCTC	3 cut(s)	212, 299, 311
BsmBI	CGTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	108, 174, 515
Bso31I	GGTCTC	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	3 cut(s)	36, 437, 452
Bsp143I	GATC	4 cut(s)	120, 241, 249, 403
BspACI	CCGC	2 cut(s)	87, 105
BspANI	GGCC	3 cut(s)	108, 174, 515
BspCNI	CTCAG	4 cut(s)	56, 182, 322, 485
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	175, 434
BspPI	GGATC	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	177, 516
BssMI	GATC	4 cut(s)	120, 241, 249, 403
BssT1I	CCWWGG	2 cut(s)	177, 516
Bst4CI	ACNGT	2 cut(s)	10, 223
Bst6I	CTCTTC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	51
BstDEI	CTNAG	4 cut(s)	43, 169, 309, 472
BstEII	GGTNACC	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	263, 526
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	26, 202
BstKTI	GATC	4 cut(s)	123, 244, 252, 406
BstMAI	GTCTC	3 cut(s)	212, 299, 311
BstMBI	GATC	4 cut(s)	120, 241, 249, 403
BstMCI	CGRYCG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 180, 206
BstPAI	GACNNNNGTC	1 cut(s)	138
BstPI	GGTNACC	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	2 cut(s)	437, 452
BstUI	CGCG	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	106
Bsu36I	CCTNAGG	2 cut(s)	43, 169
BsuRI	GGCC	3 cut(s)	108, 174, 515
BtsCI	GGATG	2 cut(s)	263, 526
Cac8I	GCNNGC	1 cut(s)	51
CfoI	GCGC	2 cut(s)	26, 202
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	1 cut(s)	291
CviJI	RGCY	8 cut(s)	14, 53, 108, 174, 183, 363, 515, 554
CviKI_1	RGCY	8 cut(s)	14, 53, 108, 174, 183, 363, 515, 554
DdeI	CTNAG	4 cut(s)	43, 169, 309, 472
DpnI	GATC	4 cut(s)	122, 243, 251, 405
DpnII	GATC	4 cut(s)	120, 241, 249, 403
EaeI	YGGCCR	1 cut(s)	106
EagI	CGGCCG	1 cut(s)	106
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	177, 516
Eco31I	GGTCTC	1 cut(s)	311
Eco47III	AGCGCT	1 cut(s)	25
Eco52I	CGGCCG	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	462
Eco81I	CCTNAGG	2 cut(s)	43, 169
Eco91I	GGTNACC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	190
EcoT14I	CCWWGG	2 cut(s)	177, 516
ErhI	CCWWGG	2 cut(s)	177, 516
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	1 cut(s)	294
FaiI	YATR	2 cut(s)	150, 292
FatI	CATG	1 cut(s)	290
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	250, 533
Fsp4HI	GCNGC	1 cut(s)	106
GlaI	GCGC	2 cut(s)	25, 201
GluI	GCNGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	3 cut(s)	108, 174, 515
HapII	CCGG	5 cut(s)	29, 63, 188, 342, 372
HhaI	GCGC	2 cut(s)	26, 202
Hin1II	CATG	1 cut(s)	294
Hin6I	GCGC	2 cut(s)	24, 200
HinP1I	GCGC	2 cut(s)	24, 200
HinfI	GANTC	2 cut(s)	134, 307
HpaII	CCGG	5 cut(s)	29, 63, 188, 342, 372
HphI	GGTGA	5 cut(s)	85, 202, 227, 314, 331
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	246, 316, 475
Hpy188III	TCNNGA	3 cut(s)	158, 385, 407
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	205, 289
HpyCH4III	ACNGT	2 cut(s)	10, 223
HpyCH4V	TGCA	3 cut(s)	263, 280, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 180, 206
HpyF3I	CTNAG	4 cut(s)	43, 169, 309, 472
Hsp92II	CATG	1 cut(s)	294
HspAI	GCGC	2 cut(s)	24, 200
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	4 cut(s)	120, 241, 249, 403
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	31
LweI	GCATC	1 cut(s)	272
MaeIII	GTNAC	2 cut(s)	190, 337
MalI	GATC	4 cut(s)	122, 243, 251, 405
MboI	GATC	4 cut(s)	120, 241, 249, 403
MboII	GAAGA	2 cut(s)	47, 259
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	3 cut(s)	36, 437, 452
MluCI	AATT	2 cut(s)	345, 421
MlyI	GAGTC	2 cut(s)	128, 301
MnlI	CCTC	5 cut(s)	52, 178, 205, 498, 543
MseI	TTAA	2 cut(s)	390, 556
MspI	CCGG	5 cut(s)	29, 63, 188, 342, 372
MspR9I	CCNGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	11, 180, 206
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	4 cut(s)	120, 241, 249, 403
NlaIII	CATG	1 cut(s)	294
NlaIV	GGNNCC	2 cut(s)	175, 434
NmuCI	GTSAC	2 cut(s)	190, 337
NspV	TTCGAA	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	60
PflFI	GACNNNGTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	2 cut(s)	128, 301
PpsI	GAGTC	2 cut(s)	128, 301
PshAI	GACNNNNGTC	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	175, 434
PspPI	GGNCC	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	2 cut(s)	390, 556
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	4 cut(s)	120, 241, 249, 403
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	128, 301
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	3 cut(s)	36, 437, 452
SetI	ASST	5 cut(s)	44, 170, 197, 300, 509
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	426
Sse9I	AATT	2 cut(s)	345, 421
SsiI	CCGC	2 cut(s)	87, 105
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	177, 516
TaaI	ACNGT	2 cut(s)	10, 223
TaqI	TCGA	3 cut(s)	36, 284, 426
TasI	AATT	2 cut(s)	345, 421
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	390, 556
Tru9I	TTAA	2 cut(s)	390, 556
TseFI	GTSAC	2 cut(s)	190, 337
Tsp45I	GTSAC	2 cut(s)	190, 337
TspDTI	ATGAA	2 cut(s)	366, 454
Tth111I	GACNNNGTC	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.