Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001608.1

Orthogroup ID

OG0003122

Physical Location & Seq

Genomic Coordinates Forward (+)

6572 .. 7195

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001608.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgatgatgtccctgaagaacttaattggaagcctgagcatgatcggcagcatactcatggccatggcaaccataaaccaaacatctccggtgctcgatacgtctgggaaggcacttaaatccagcatagattaccacatcaaacccgtcagtacttacaaaggtggtgctttaactctaataaaccgggagccatatttatgtccactctacgttggccaaggaaatgtctcaggctggccttttcagttcaagccatttttcgacggagaaacagtggtgagggagagtagggatcaaatgattatatctcgtgtctctacacattgcaggcggtcaagttcatggtcgattgaaaaagctaacccagaggaccaacggaaattaattgctatgcaagaaactgcaagaggaaaactgccaaatggtaaatactttaggattactagatcacagccggaggtggatggtaatagctacattctgagatggtgtcccactgatctgtgttctaattgtacattcgctgcttgtggaaatattggttctttagattcgaatggagggaagaggttgttggctttgaatggttctgagcttccggttgtgtttgaaagggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0015066 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kunitz_legume

Protein Analysis

207

Amino Acids

22.86

Weight (kDa)

9.2

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73260
fragaria_vesca	FvH4_3g17480 FvH4_3g17480 FvH4_3g17790
malus_domestica	MD03G1251400.v1.1 MD11G1269300.v1.1 MD11G1269400.v1.1
prunus_persica	Prupe.4G155200_v2.0.a1
pyrus_communis	pycom03g19880 pycom03g19890
rosa_chinensis	RchiOBHm_Chr5g0029031 RchiOBHm_Chr5g0029081
rosa_laevigata	RLG00000033135 RLG00000033138 RLG00000033181
rosa_multiflora	Rmu_co8286077.1_g000001 Rmu_sc0001608.1_g000003 Rmu_sc0004324.1_g000002 Rmu_sc0010962.1_g000005 Rmu_sc0026501.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050360
rosa_rugosa	Rorug05G0112300 Rorug05G0112400
rosa_samantha	Rh5AG204500 Rh5AG204600 Rh5AG207300 Rh5BG202800 Rh5BG203000 Rh5BG206100 Rh5CG224100 Rh5CG228200 Rh5DG206700 Rh5DG206800 Rh5DG209800
rosa_wichuraiana	Rw5G018540 Rw5G018560 Rw5G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	334
AclWI	GGATC	1 cut(s)	303
AcoI	YGGCCR	2 cut(s)	60, 217
AcuI	CTGAAG	1 cut(s)	35
AfaI	GTAC	2 cut(s)	154, 520
AgsI	TTSAA	4 cut(s)	253, 356, 586, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	560, 592
AluBI	AGCT	3 cut(s)	362, 477, 598
AluI	AGCT	3 cut(s)	362, 477, 598
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	2 cut(s)	235, 322
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	3 cut(s)	60, 217, 239
ApeKI	GCWGC	2 cut(s)	48, 527
AseI	ATTAAT	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	373
BalI	TGGCCA	2 cut(s)	62, 219
BauI	CACGAG	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	60, 514
BccI	CCATC	2 cut(s)	461, 483
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	235, 322
BfaI	CTAG	1 cut(s)	447
BisI	GCNGC	2 cut(s)	49, 528
BlsI	GCNGC	2 cut(s)	50, 529
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	63, 220
BsaWI	WCCGGW	2 cut(s)	88, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse3DI	GCAATG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	63, 220
BseGI	GGATG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	4 cut(s)	26, 246, 476, 585
BseXI	GCAGC	2 cut(s)	60, 514
BshFI	GGCC	3 cut(s)	62, 219, 241
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	89, 187, 458, 602
BslFI	GGGAC	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	235, 322
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	3 cut(s)	62, 219, 241
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1407I	TGTACA	1 cut(s)	518
Bsp143I	GATC	4 cut(s)	42, 295, 449, 502
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	1 cut(s)	334
BspANI	GGCC	3 cut(s)	62, 219, 241
BspCNI	CTCAG	4 cut(s)	27, 245, 477, 586
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	303
BspT104I	TTCGAA	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	518
BssECI	CCNNGG	2 cut(s)	63, 220
BssMI	GATC	4 cut(s)	42, 295, 449, 502
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	63, 220
Bst2BI	CACGAG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	239, 332
BstDEI	CTNAG	4 cut(s)	35, 232, 485, 594
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	4 cut(s)	45, 298, 452, 505
BstMAI	GTCTC	2 cut(s)	235, 322
BstMBI	GATC	4 cut(s)	42, 295, 449, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	60, 514
BsuRI	GGCC	3 cut(s)	62, 219, 241
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	282, 498
Cac8I	GCNNGC	2 cut(s)	239, 332
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	153, 519
CviAII	CATG	5 cut(s)	40, 58, 64, 345, 621
CviQI	GTAC	2 cut(s)	153, 519
DdeI	CTNAG	4 cut(s)	35, 232, 485, 594
DpnI	GATC	4 cut(s)	44, 297, 451, 504
DpnII	GATC	4 cut(s)	42, 295, 449, 502
EaeI	YGGCCR	2 cut(s)	60, 217
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	63, 220
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	35
EcoT14I	CCWWGG	2 cut(s)	63, 220
ErhI	CCWWGG	2 cut(s)	63, 220
FaeI	CATG	5 cut(s)	43, 61, 67, 348, 624
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	5 cut(s)	39, 57, 63, 344, 620
Fnu4HI	GCNGC	2 cut(s)	49, 528
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	49, 528
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	49, 528
HaeIII	GGCC	3 cut(s)	62, 219, 241
HapII	CCGG	4 cut(s)	89, 187, 458, 602
Hin1II	CATG	5 cut(s)	43, 61, 67, 348, 624
HinfI	GANTC	1 cut(s)	554
HpaII	CCGG	4 cut(s)	89, 187, 458, 602
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	486, 595
Hpy8I	GTNNAC	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	2 cut(s)	101, 213
HpyCH4V	TGCA	3 cut(s)	330, 397, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	4 cut(s)	35, 232, 485, 594
HpySE526I	ACGT	2 cut(s)	101, 213
Hsp92II	CATG	5 cut(s)	43, 61, 67, 348, 624
Kzo9I	GATC	4 cut(s)	42, 295, 449, 502
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	60, 514
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	2 cut(s)	101, 213
MalI	GATC	4 cut(s)	44, 297, 451, 504
MboI	GATC	4 cut(s)	42, 295, 449, 502
MboII	GAAGA	2 cut(s)	28, 580
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	2 cut(s)	62, 219
MluCI	AATT	4 cut(s)	24, 383, 387, 514
MluNI	TGGCCA	2 cut(s)	62, 219
MnlI	CCTC	6 cut(s)	276, 364, 404, 454, 557, 564
Mox20I	TGGCCA	2 cut(s)	62, 219
MscI	TGGCCA	2 cut(s)	62, 219
MseI	TTAA	4 cut(s)	23, 117, 173, 386
MslI	CAYNNNNRTG	3 cut(s)	56, 62, 199
Msp20I	TGGCCA	2 cut(s)	62, 219
MspI	CCGG	4 cut(s)	89, 187, 458, 602
MspR9I	CCNGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	45
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	4 cut(s)	42, 295, 449, 502
NlaIII	CATG	5 cut(s)	43, 61, 67, 348, 624
NlaIV	GGNNCC	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	557
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	50, 529
PshBI	ATTAAT	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	154, 520
RsaNI	GTAC	2 cut(s)	153, 519
RseI	CAYNNNNRTG	3 cut(s)	56, 62, 199
SaqAI	TTAA	4 cut(s)	23, 117, 173, 386
SatI	GCNGC	2 cut(s)	49, 528
Sau3AI	GATC	4 cut(s)	42, 295, 449, 502
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	8 cut(s)	104, 166, 216, 364, 465, 479, 575, 600
SfuI	TTCGAA	1 cut(s)	557
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	3 cut(s)	56, 62, 199
Sse9I	AATT	4 cut(s)	24, 383, 387, 514
SsiI	CCGC	1 cut(s)	334
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	63, 220
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	2 cut(s)	104, 216
TaqI	TCGA	4 cut(s)	96, 264, 350, 557
TasI	AATT	4 cut(s)	24, 383, 387, 514
TatI	WGTACW	2 cut(s)	152, 518
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	4 cut(s)	23, 117, 173, 386
Tru9I	TTAA	4 cut(s)	23, 117, 173, 386
TscAI	CASTG	2 cut(s)	282, 505
TseI	GCWGC	2 cut(s)	48, 527
TspDTI	ATGAA	1 cut(s)	333
TspGWI	ACGGA	2 cut(s)	282, 394
TspRI	CASTG	2 cut(s)	282, 505
VpaK11BI	GGWCC	1 cut(s)	373
VspI	ATTAAT	1 cut(s)	386
XspI	CTAG	1 cut(s)	447
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.