Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003122

Physical Location & Seq

Genomic Coordinates Reverse (-)

22791753 .. 22793246

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGTCCATGAATTTGATCGGAAGCTTGAGCTGTTGCATGTGGCTAGTGATGGCCATGGCAACCGCAGCCCAAGATAGCGCTCCAGTGCTCGACACCTCTGGGCAGGCTCTTCAATCCGGTGTAGACTACTACATCAAACCCGCCATCACCGACAACGGCGGCCGTTTCACTTTGATCGACCGAAACGACTCGTGTCCTTTCTATGCTGGTCAAGAAAACACCTCGGGCCCCGAGGGCTTCCCGGTGACCTTTGCGCCTTTCGCAGAGGGCGAGACGGTGGTGAGGGAGACTAGGGATCAGAAGATCACATTCTCTGCATTCACAATCTGTGTGCAGTCAACGGCATGGAAGGTCGGTGAGACTCAATCAGAGACTCAGAGGAGATTGATTGTCACCGGAATTGATCAAAACGAAGGCCTACCAGGTCCGGCCGGAAACTACTTCAGGATTAATAAACAGGCAGATCATGATAGCGTCTACAACCTGCAGTGGTGCCCTACAGAAGTGTGCCCGACATGCAGGTTCATTTGCGGAGATGTGGGTGCTTTGGTTGAGAATGACAAGAGGCTGTTGGCCTTGGATGGTTCTGTGCTTCCTGTTGTCTTCGAGAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0015066 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kunitz_legume

Protein Analysis

206

Amino Acids

22.44

Weight (kDa)

4.64

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kunitz_legume	PF00197	30 - 205	1e-47	Trypsin and protease inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003122)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73260
fragaria_vesca	FvH4_3g17480 FvH4_3g17480 FvH4_3g17790
malus_domestica	MD03G1251400.v1.1 MD11G1269300.v1.1 MD11G1269400.v1.1
prunus_persica	Prupe.4G155200_v2.0.a1
pyrus_communis	pycom03g19880 pycom03g19890
rosa_chinensis	RchiOBHm_Chr5g0029031 RchiOBHm_Chr5g0029081
rosa_laevigata	RLG00000033135 RLG00000033138 RLG00000033181
rosa_multiflora	Rmu_co8286077.1_g000001 Rmu_sc0001608.1_g000003 Rmu_sc0004324.1_g000002 Rmu_sc0010962.1_g000005 Rmu_sc0026501.1_g000002
rosa_roxburghii	Rroxscaffold_1G00050360
rosa_rugosa	Rorug05G0112300 Rorug05G0112400
rosa_samantha	Rh5AG204500 Rh5AG204600 Rh5AG207300 Rh5BG202800 Rh5BG203000 Rh5BG206100 Rh5CG224100 Rh5CG228200 Rh5DG206700 Rh5DG206800 Rh5DG209800
rosa_wichuraiana	Rw5G018540 Rw5G018560 Rw5G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	495, 513
AccB1I	GGYRCC	1 cut(s)	495
AccI	GTMKAC	2 cut(s)	126, 480
AciI	CCGC	4 cut(s)	66, 144, 162, 534
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	3 cut(s)	54, 163, 432
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	430
AfeI	AGCGCT	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	424
AluBI	AGCT	2 cut(s)	27, 33
AluI	AGCT	2 cut(s)	27, 33
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	4 cut(s)	269, 284, 356, 368
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	2 cut(s)	226, 233
Aor51HI	AGCGCT	1 cut(s)	82
AoxI	GGCC	6 cut(s)	54, 163, 229, 418, 432, 576
ApaI	GGGCCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	13
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	83, 259
AspS9I	GGNCC	3 cut(s)	229, 230, 428
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	5 cut(s)	142, 259, 295, 371, 388
AvaI	CYCGRG	2 cut(s)	226, 233
AvaII	GGWCC	1 cut(s)	428
BaeGI	GKGCMC	3 cut(s)	233, 500, 515
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	3 cut(s)	46, 155, 578
BceAI	ACGGC	3 cut(s)	150, 175, 360
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	4 cut(s)	269, 284, 356, 368
BfaI	CTAG	2 cut(s)	47, 294
BfmI	CTRYAG	2 cut(s)	488, 501
BfoI	RGCGCY	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	495, 513
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	69, 163
BlsI	GCNGC	2 cut(s)	70, 164
Bme1390I	CCNGG	2 cut(s)	245, 426
Bme18I	GGWCC	1 cut(s)	428
BmeT110I	CYCGRG	2 cut(s)	226, 233
BmgT120I	GGNCC	3 cut(s)	229, 230, 428
BmiI	GGNNCC	3 cut(s)	231, 232, 497
BmrFI	CCNGG	2 cut(s)	245, 426
BoxI	GACNNNNGTC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	4 cut(s)	57, 225, 234, 579
BsaWI	WCCGGW	2 cut(s)	119, 398
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	4 cut(s)	57, 225, 234, 579
BseGI	GGATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	3 cut(s)	233, 500, 515
BseX3I	CGGCCG	2 cut(s)	163, 432
BseXI	GCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	356
Bsh1285I	CGRYCG	3 cut(s)	166, 184, 435
BshFI	GGCC	6 cut(s)	56, 165, 231, 420, 434, 578
BshNI	GGYRCC	1 cut(s)	495
BsiEI	CGRYCG	3 cut(s)	166, 184, 435
BsiHKAI	GWGCWC	1 cut(s)	93
BsiHKCI	CYCGRG	2 cut(s)	226, 233
BsiSI	CCGG	5 cut(s)	120, 245, 399, 431, 435
BsmAI	GTCTC	4 cut(s)	269, 284, 356, 368
BsmBI	CGTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	6 cut(s)	56, 165, 231, 420, 434, 578
BsoBI	CYCGRG	2 cut(s)	226, 233
Bsp120I	GGGCCC	1 cut(s)	229
Bsp1286I	GDGCHC	4 cut(s)	93, 233, 500, 515
Bsp143I	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	4 cut(s)	66, 144, 162, 534
BspANI	GGCC	6 cut(s)	56, 165, 231, 420, 434, 578
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	3 cut(s)	231, 232, 497
BspMAI	CTGCAG	1 cut(s)	492
BspMI	ACCTGC	2 cut(s)	495, 513
BspPI	GGATC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	4 cut(s)	57, 225, 234, 579
BssMI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
BssSI	CACGAG	1 cut(s)	193
BssT1I	CCWWGG	2 cut(s)	57, 579
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	589
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	2 cut(s)	83, 259
BstKTI	GATC	6 cut(s)	21, 180, 301, 309, 409, 469
BstMAI	GTCTC	4 cut(s)	269, 284, 356, 368
BstMBI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
BstMCI	CGRYCG	3 cut(s)	166, 184, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 237, 263, 519
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	2 cut(s)	43, 522
BstPAI	GACNNNNGTC	1 cut(s)	195
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	2 cut(s)	243, 424
BstSFI	CTRYAG	2 cut(s)	488, 501
BstSLI	GKGCMC	3 cut(s)	233, 500, 515
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	598
BstZI	CGGCCG	2 cut(s)	163, 432
BsuRI	GGCC	6 cut(s)	56, 165, 231, 420, 434, 578
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	93, 497
BveI	ACCTGC	2 cut(s)	495, 513
Cac8I	GCNNGC	1 cut(s)	108
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	83, 259
Cfr13I	GGNCC	3 cut(s)	229, 230, 428
CseI	GACGC	1 cut(s)	466
CsiI	ACCWGGT	1 cut(s)	424
CviAII	CATG	6 cut(s)	10, 40, 58, 348, 470, 519
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	6 cut(s)	20, 179, 300, 308, 408, 468
DpnII	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
EaeI	YGGCCR	3 cut(s)	54, 163, 432
EagI	CGGCCG	2 cut(s)	163, 432
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EclXI	CGGCCG	2 cut(s)	163, 432
Eco130I	CCWWGG	2 cut(s)	57, 579
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	428
Eco47III	AGCGCT	1 cut(s)	82
Eco52I	CGGCCG	2 cut(s)	163, 432
Eco57I	CTGAAG	1 cut(s)	430
Eco88I	CYCGRG	2 cut(s)	226, 233
Eco91I	GGTNACC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	230
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	57, 579
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	57, 579
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
FaiI	YATR	7 cut(s)	11, 41, 59, 207, 349, 471, 520
FatI	CATG	6 cut(s)	9, 39, 57, 347, 469, 518
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	2 cut(s)	126, 480
Fnu4HI	GCNGC	2 cut(s)	69, 163
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	69, 163
FspBI	CTAG	2 cut(s)	47, 294
GlaI	GCGC	2 cut(s)	82, 258
GluI	GCNGC	2 cut(s)	69, 163
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	6 cut(s)	56, 165, 231, 420, 434, 578
HapII	CCGG	5 cut(s)	120, 245, 399, 431, 435
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	2 cut(s)	83, 259
Hin1II	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
Hin6I	GCGC	2 cut(s)	81, 257
HinP1I	GCGC	2 cut(s)	81, 257
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	25
HinfI	GANTC	3 cut(s)	191, 364, 376
HpaII	CCGG	5 cut(s)	120, 245, 399, 431, 435
HphI	GGTGA	5 cut(s)	142, 259, 295, 371, 388
Hpy166II	GTNNAC	3 cut(s)	127, 342, 481
Hpy188I	TCNGA	4 cut(s)	23, 303, 373, 381
Hpy188III	TCNNGA	4 cut(s)	215, 448, 470, 610
Hpy8I	GTNNAC	3 cut(s)	127, 342, 481
HpyAV	CCTTC	3 cut(s)	346, 410, 607
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	5 cut(s)	39, 320, 337, 490, 522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 237, 263, 519
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
HspAI	GCGC	2 cut(s)	81, 257
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	80
MabI	ACCWGGT	1 cut(s)	424
MaeI	CTAG	2 cut(s)	47, 294
MaeIII	GTNAC	2 cut(s)	247, 394
MalI	GATC	6 cut(s)	20, 179, 300, 308, 408, 468
MboI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
MboII	GAAGA	3 cut(s)	104, 316, 598
MhlI	GDGCHC	4 cut(s)	93, 233, 500, 515
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	2 cut(s)	13, 402
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	3 cut(s)	185, 358, 370
MnlI	CCTC	7 cut(s)	109, 229, 235, 262, 279, 375, 561
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	2 cut(s)	453, 619
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	5 cut(s)	120, 245, 399, 431, 435
MspR9I	CCNGG	2 cut(s)	245, 426
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	4 cut(s)	68, 237, 263, 519
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
NlaIII	CATG	6 cut(s)	13, 43, 61, 351, 473, 522
NlaIV	GGNNCC	3 cut(s)	231, 232, 497
NmuCI	GTSAC	2 cut(s)	247, 394
NspI	RCATGY	2 cut(s)	43, 522
PagI	TCATGA	1 cut(s)	469
PceI	AGGCCT	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 270
PctI	GAATGC	1 cut(s)	320
PkrI	GCNGC	2 cut(s)	70, 164
PleI	GAGTC	3 cut(s)	185, 358, 370
PpsI	GAGTC	3 cut(s)	185, 358, 370
PshAI	GACNNNNGTC	1 cut(s)	195
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	3 cut(s)	231, 232, 497
PspOMI	GGGCCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	229, 230, 428
PstI	CTGCAG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	453, 619
SatI	GCNGC	2 cut(s)	69, 163
Sau3AI	GATC	6 cut(s)	18, 177, 298, 306, 406, 466
Sau96I	GGNCC	3 cut(s)	229, 230, 428
SchI	GAGTC	3 cut(s)	185, 358, 370
ScrFI	CCNGG	2 cut(s)	245, 426
SduI	GDGCHC	4 cut(s)	93, 233, 500, 515
SetI	ASST	9 cut(s)	29, 35, 101, 227, 254, 357, 430, 489, 527
SexAI	ACCWGGT	1 cut(s)	424
SfcI	CTRYAG	2 cut(s)	488, 501
SinI	GGWCC	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	13, 402
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	4 cut(s)	66, 144, 162, 534
SspMI	CTAG	2 cut(s)	47, 294
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	243, 424
StyI	CCWWGG	2 cut(s)	57, 579
TaaI	ACNGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	93, 180, 609
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	13, 402
TauI	GCSGC	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	453, 619
Tru9I	TTAA	2 cut(s)	453, 619
TscAI	CASTG	2 cut(s)	93, 497
TseFI	GTSAC	2 cut(s)	247, 394
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	247, 394
TspDTI	ATGAA	3 cut(s)	17, 26, 517
TspRI	CASTG	2 cut(s)	93, 497
VpaK11BI	GGWCC	1 cut(s)	428
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	13
XceI	RCATGY	2 cut(s)	43, 522
XmiI	GTMKAC	2 cut(s)	126, 480
XspI	CTAG	2 cut(s)	47, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.