Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8312713.1

Orthogroup ID

OG0003692

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 882

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8312713.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggcttctgtctgctggctctattacacaagaagcgacttcacaaaagctgacttttatgctggagagtgtcatacagaaagtcaacgaagagctgttgtagagtcattgatggcagcacaacagtattgcttatcaacaacttgcagaaggaagttcttgcttggtcactttggggaaatctttccatctgataaatgtggtaattgtgataattgtatttcctcaaagaaggagagggacatgtctagagaagcatttcttctcatggcttgcattcaatcatgtcggggtaaatggggtctgaatatgcctgtagatattcttcgtggctcacgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000217 GO:0000287 GO:0000400 GO:0000403 GO:0000405 GO:0000723 GO:0000724 GO:0000725 GO:0000731 GO:0000781 GO:0001302 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003684 GO:0003824 GO:0004003 GO:0004386 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0005730 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007154 GO:0007275 GO:0007568 GO:0007569 GO:0008026 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008408 GO:0009058 GO:0009059 GO:0009267 GO:0009314 GO:0009378 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009893 GO:0009987 GO:0009991 GO:0010212 GO:0010225 GO:0010259 GO:0010332 GO:0010604 GO:0010941 GO:0015630 GO:0016043 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030145 GO:0031297 GO:0031323 GO:0031325 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032200 GO:0032356 GO:0032357 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0040009 GO:0042592 GO:0042594 GO:0042623 GO:0042802 GO:0042803 GO:0042981 GO:0042995 GO:0043005 GO:0043067 GO:0043085 GO:0043138 GO:0043140 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0044806 GO:0044877 GO:0045005 GO:0045911 GO:0045935 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051179 GO:0051276 GO:0051336 GO:0051345 GO:0051641 GO:0051716 GO:0051880 GO:0060249 GO:0060255 GO:0060542 GO:0061749 GO:0061820 GO:0061821 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070336 GO:0070337 GO:0070727 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071496 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090657 GO:0097159 GO:0097458 GO:0098530 GO:0098687 GO:0104004 GO:0120025 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902570 GO:1905773

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD HRDC HTH_40 Helicase_C RQC RecQ_Zn_bind

Protein Analysis

113

Amino Acids

12.93

Weight (kDa)

8.62

Isoelectric Point (pI)

76.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41250 FvH4_3g41250 FvH4_3g41250
malus_domestica	MD03G1046200.v1.1 MD11G1048500.v1.1
prunus_persica	Prupe.6G037500_v2.0.a1
pyrus_communis	pycom03g03640
rosa_chinensis	RchiOBHm_Chr5g0074051 RchiOBHm_Chr5g0074061
rosa_laevigata	RLG00000036442 RLG00000036447
rosa_multiflora	Rmu_co8312713.1_g000001 Rmu_sc0004053.1_g000009 Rmu_sc0011497.1_g000014 Rmu_sc0015038.1_g000001 Rmu_sc0036241.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007340 Rroxscaffold_1G00007350 Rroxscaffold_4G00327760
rosa_rugosa	Rorug05G0428500 Rorug05G0428500 Rorug05G0428600 Rorug05G0428700 Rorug05G0428800
rosa_samantha	Rh5AG485900 Rh5AG486300 Rh5AG486500 Rh5BG506100 Rh5BG506800 Rh5CG529800 Rh5CG530300 Rh5DG518800
rosa_wichuraiana	Rw5G045100 Rw5G045130 Rw5G045150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	1 cut(s)	281
AluBI	AGCT	2 cut(s)	50, 95
AluI	AGCT	2 cut(s)	50, 95
ApeKI	GCWGC	1 cut(s)	116
Asp700I	GAANNNNTTC	2 cut(s)	183, 258
BarI	GAAGNNNNNNTAC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	106, 196
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	315
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	17, 274
BstNSI	RCATGY	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	17, 274
CviAII	CATG	3 cut(s)	244, 268, 285
CviJI	RGCY	6 cut(s)	5, 19, 50, 95, 272, 333
CviKI_1	RGCY	6 cut(s)	5, 19, 50, 95, 272, 333
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
FaeI	CATG	3 cut(s)	247, 271, 288
FaiI	YATR	6 cut(s)	60, 75, 245, 269, 286, 311
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	3 cut(s)	243, 267, 284
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	249
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	84
Hin1II	CATG	3 cut(s)	247, 271, 288
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	193, 306
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	144, 226
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	147, 276
Hsp92II	CATG	3 cut(s)	247, 271, 288
LguI	GCTCTTC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	48, 327
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	167
MboII	GAAGA	3 cut(s)	102, 254, 317
MluCI	AATT	2 cut(s)	205, 214
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	231, 235
MroXI	GAANNNNTTC	2 cut(s)	183, 258
Mva1269I	GAATGC	1 cut(s)	276
NlaIII	CATG	3 cut(s)	247, 271, 288
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	247
PciI	ACATGT	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	85
PctI	GAATGC	1 cut(s)	276
PdmI	GAANNNNTTC	2 cut(s)	183, 258
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PscI	ACATGT	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	85
SatI	GCNGC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	113
SetI	ASST	2 cut(s)	52, 97
SfcI	CTRYAG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	205, 214
SspMI	CTAG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	126
TasI	AATT	2 cut(s)	205, 214
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	167
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	183, 258
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.