Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003692

Physical Location & Seq

Genomic Coordinates Forward (+)

60619795 .. 60621980

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGACTCTTATAAAAGCCGCTTACCAAACACTCGGCAGCTTTGCTTTTCAGCCACTTATTCTCGTAAATAGCGAGAAGCCAGCTTTTCTCAAAGAACAGCCCCCCAAACATAGCCATAGACTTCTGCTGCGAAGTCTCCACCGCCGCGACTCGGACTCCGGGACTCAAACGAGAGAGAGATCGGATCATGGTGTTTATGGTGGATTCCTCCGGGTACGTCACACGAATGCTATACCTTCAGCAGGTATCAAGATAACTCCAAGACCCCGTCAATCGGAATACATGAAGTCGAGAGGTATAAACCGTACGGACGGTTTATGCCTCTCCAATGCTTGCTTAAGTAAGACTCGTATATATTTTGACAAGAGTAATAGTAGGGAAAGAAGTTATTACCCCATTGAAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.45

Weight (kDa)

10.24

Isoelectric Point (pI)

57.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41250 FvH4_3g41250 FvH4_3g41250
malus_domestica	MD03G1046200.v1.1 MD11G1048500.v1.1
prunus_persica	Prupe.6G037500_v2.0.a1
pyrus_communis	pycom03g03640
rosa_chinensis	RchiOBHm_Chr5g0074051 RchiOBHm_Chr5g0074061
rosa_laevigata	RLG00000036442 RLG00000036447
rosa_multiflora	Rmu_co8312713.1_g000001 Rmu_sc0004053.1_g000009 Rmu_sc0011497.1_g000014 Rmu_sc0015038.1_g000001 Rmu_sc0036241.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007340 Rroxscaffold_1G00007350 Rroxscaffold_4G00327760
rosa_rugosa	Rorug05G0428500 Rorug05G0428500 Rorug05G0428600 Rorug05G0428700 Rorug05G0428800
rosa_samantha	Rh5AG485900 Rh5AG486300 Rh5AG486500 Rh5BG506100 Rh5BG506800 Rh5CG529800 Rh5CG530300 Rh5DG518800
rosa_wichuraiana	Rw5G045100 Rw5G045130 Rw5G045150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	233
AccII	CGCG	1 cut(s)	147
AciI	CCGC	3 cut(s)	18, 142, 145
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	216, 307
AfiI	CCNNNNNNNGG	4 cut(s)	151, 242, 274, 401
AflII	CTTAAG	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	401
AluBI	AGCT	2 cut(s)	39, 83
AluI	AGCT	2 cut(s)	39, 83
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	36, 127
AsuC2I	CCSGG	2 cut(s)	160, 212
BbvI	GCAGC	2 cut(s)	48, 114
BcnI	CCSGG	2 cut(s)	160, 212
BcoDI	GTCTC	1 cut(s)	140
BfrI	CTTAAG	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	4 cut(s)	18, 37, 128, 145
BlsI	GCNGC	4 cut(s)	19, 38, 129, 146
Bme1390I	CCNGG	2 cut(s)	160, 212
BmrFI	CCNGG	2 cut(s)	160, 212
BpuMI	CCSGG	2 cut(s)	160, 212
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 242, 274, 401
BseLI	CCNNNNNNNGG	4 cut(s)	151, 242, 274, 401
BseXI	GCAGC	2 cut(s)	48, 114
Bsh1236I	CGCG	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	159, 211
BsiWI	CGTACG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	4 cut(s)	151, 242, 274, 401
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	179, 184
BspACI	CCGC	3 cut(s)	18, 142, 145
BspFNI	CGCG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	337
BssMI	GATC	2 cut(s)	179, 184
Bst4CI	ACNGT	2 cut(s)	305, 314
BstAFI	CTTAAG	1 cut(s)	337
BstC8I	GCNNGC	2 cut(s)	81, 334
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	182, 187
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	179, 184
BstSCI	CCNGG	2 cut(s)	158, 210
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	48, 114
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	2 cut(s)	81, 334
Csp6I	GTAC	2 cut(s)	215, 306
CviAII	CATG	2 cut(s)	188, 283
CviJI	RGCY	7 cut(s)	17, 39, 52, 79, 83, 100, 114
CviKI_1	RGCY	7 cut(s)	17, 39, 52, 79, 83, 100, 114
CviQI	GTAC	2 cut(s)	215, 306
DpnI	GATC	2 cut(s)	181, 186
DpnII	GATC	2 cut(s)	179, 184
Eco57I	CTGAAG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	191, 286
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	187, 282
Fnu4HI	GCNGC	4 cut(s)	18, 37, 128, 145
Fsp4HI	GCNGC	4 cut(s)	18, 37, 128, 145
GluI	GCNGC	4 cut(s)	18, 37, 128, 145
HapII	CCGG	2 cut(s)	159, 211
Hin1II	CATG	2 cut(s)	191, 286
HinfI	GANTC	6 cut(s)	4, 149, 155, 163, 204, 346
HpaII	CCGG	2 cut(s)	159, 211
Hpy188I	TCNGA	3 cut(s)	154, 184, 277
Hpy188III	TCNNGA	2 cut(s)	250, 291
HpyAV	CCTTC	2 cut(s)	246, 395
HpyCH4III	ACNGT	2 cut(s)	305, 314
HpyCH4IV	ACGT	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	191, 286
Kzo9I	GATC	2 cut(s)	179, 184
LpnPI	CCDG	4 cut(s)	93, 172, 224, 228
Lsp1109I	GCAGC	2 cut(s)	48, 114
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	181, 186
MboI	GATC	2 cut(s)	179, 184
MlyI	GAGTC	4 cut(s)	143, 149, 157, 340
MnlI	CCTC	3 cut(s)	218, 287, 332
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	2 cut(s)	159, 211
MspR9I	CCNGG	2 cut(s)	160, 212
Mva1269I	GAATGC	1 cut(s)	232
MvnI	CGCG	1 cut(s)	147
NciI	CCSGG	2 cut(s)	160, 212
NdeII	GATC	2 cut(s)	179, 184
NlaIII	CATG	2 cut(s)	191, 286
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	204
Pfl23II	CGTACG	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	19, 38, 129, 146
PleI	GAGTC	4 cut(s)	143, 149, 157, 340
PpsI	GAGTC	4 cut(s)	143, 149, 157, 340
PsiI	TTATAA	1 cut(s)	11
PspLI	CGTACG	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	267
RsaI	GTAC	2 cut(s)	216, 307
RsaNI	GTAC	2 cut(s)	215, 306
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	4 cut(s)	18, 37, 128, 145
Sau3AI	GATC	2 cut(s)	179, 184
SchI	GAGTC	4 cut(s)	143, 149, 157, 340
ScrFI	CCNGG	2 cut(s)	160, 212
SetI	ASST	7 cut(s)	41, 85, 220, 238, 247, 298, 406
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SsiI	CCGC	3 cut(s)	18, 142, 145
StyD4I	CCNGG	2 cut(s)	158, 210
TaaI	ACNGT	2 cut(s)	305, 314
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	290
TauI	GCSGC	2 cut(s)	20, 147
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	2 cut(s)	36, 127
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	1 cut(s)	323
Tth111I	GACNNNGTC	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	337
XagI	CCTNNNNNAGG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.