Rmu_sc0036241.1_g000003

Belongs to the helicase family. RecQ subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036241.1
OG0003692
Physical Location & Seq
Reverse (-)
6360 .. 8675
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036241.1_g000003.1.cds

Sequence Viewer

Length: 1042 bp
atatgccatttgtggtgatcaagcaatcaaaaaaattgctttaacaagaccatctaccagagcaaggttagctaacatcgatggcgtcaaccagcaccttgtagtggcacacggtaatcattttcttcaaatcattcggcatctatcacaaggactaaacctttcattggatggagaggcacccatacaaactgctattacgaagatagtatatccagtacctaaccaccaacagagaaagttaacaccggccaagtttgaggcttggagaatgtggcatgaagacggcctctcaattcagaaaattgctaatttccctggtagagctgctcctattaaagagcagactgttcaagaatatctgatggaagctgctcaagaaggatttgcaattgattgggtcagattatgcgatgaggttggactgacacaaaaagttatctcagatattcagtgtgccatttcaaaggttggctctagagaaaagttaaagcctatcaaagatgaattaccagaagatataagttatggacgcatcaagactttcctgacaatggaaaagtgtgggatctcgctggatgggcctttacctaaccaccacaatgcaggaaaagatgatcaactcctcaagaaggaaactgaattgtcaccgagttctattcatacatcccctatggaagaacctcatgaagttaaaacctcaggccgagattcagatgcttacagcttggataaaaataaagaaacagcttcccttccattcaatagagaacaaggtttaaagctacctgaagtacattttgaggatttactctcaaagaaacgccaaaagcttggtagtcccaaggaggagagtaaaactacactgaaggcaaccgagaattccatattggattggcttagtaccaaaaatggagatactctctctgcgattctggagcacttcaatggatctgaagaagactgtgtcatcgaactcctcactggccttgaaagtgactttatgatattcagaaagaacaatatgtatttcgttatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000217 GO:0000287 GO:0000400 GO:0000403 GO:0000405 GO:0000723 GO:0000724 GO:0000725 GO:0000731 GO:0000781 GO:0001302 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003684 GO:0003824 GO:0004003 GO:0004386 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0005730 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007154 GO:0007275 GO:0007568 GO:0007569 GO:0008026 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008408 GO:0009058 GO:0009059 GO:0009267 GO:0009314 GO:0009378 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009893 GO:0009987 GO:0009991 GO:0010212 GO:0010225 GO:0010259 GO:0010332 GO:0010604 GO:0010941 GO:0015630 GO:0016043 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030145 GO:0031297 GO:0031323 GO:0031325 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032200 GO:0032356 GO:0032357 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0040009 GO:0042592 GO:0042594 GO:0042623 GO:0042802 GO:0042803 GO:0042981 GO:0042995 GO:0043005 GO:0043067 GO:0043085 GO:0043138 GO:0043140 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0044806 GO:0044877 GO:0045005 GO:0045911 GO:0045935 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051179 GO:0051276 GO:0051336 GO:0051345 GO:0051641 GO:0051716 GO:0051880 GO:0060249 GO:0060255 GO:0060542 GO:0061749 GO:0061820 GO:0061821 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070336 GO:0070337 GO:0070727 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071496 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090657 GO:0097159 GO:0097458 GO:0098530 GO:0098687 GO:0104004 GO:0120025 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902570 GO:1905773
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HRDC HTH_40 Helicase_C RQC RecQ_Zn_bind

Protein Analysis

346

Amino Acids

38.9

Weight (kDa)

6.09

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AclWI GGATC 2 cut(s) 576, 959
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 3 cut(s) 811, 888, 976
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 3 cut(s) 220, 796, 905
AfiI CCNNNNNNNGG 5 cut(s) 64, 104, 167, 554, 632
AgsI TTSAA 6 cut(s) 129, 354, 466, 764, 947, 993
AjnI CCWGG 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 873, 905
AluBI AGCT 7 cut(s) 72, 327, 372, 727, 750, 785, 833
AluI AGCT 7 cut(s) 72, 327, 372, 727, 750, 785, 833
Alw21I GWGCWC 1 cut(s) 943
AlwI GGATC 2 cut(s) 576, 959
AoxI GGCC 5 cut(s) 250, 287, 582, 704, 986
ApeKI GCWGC 2 cut(s) 327, 372
ApoI RAATTY 1 cut(s) 881
AspS9I GGNCC 1 cut(s) 582
AsuHPI GGTGA 2 cut(s) 27, 640
AxyI CCTNAGG 1 cut(s) 701
BanI GGYRCC 1 cut(s) 179
BbsI GAAGAC 2 cut(s) 289, 967
Bbv12I GWGCWC 1 cut(s) 943
BbvI GCAGC 2 cut(s) 314, 359
BccI CCATC 5 cut(s) 59, 75, 165, 359, 573
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 319
BclI TGATCA 2 cut(s) 17, 617
BfaI CTAG 1 cut(s) 478
BisI GCNGC 2 cut(s) 328, 373
BlsI GCNGC 2 cut(s) 329, 374
Bme1390I CCNGG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 582
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 3 cut(s) 149, 544, 707
BpiI GAAGAC 2 cut(s) 289, 967
BplI GAGNNNNNCTC 2 cut(s) 907, 939
BpmI CTGGAG 1 cut(s) 957
BpuEI CTTGAG 2 cut(s) 361, 612
Bsa29I ATCGAT 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 317, 844
Bsc4I CCNNNNNNNGG 5 cut(s) 64, 104, 167, 554, 632
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 216, 989
Bse21I CCTNAGG 1 cut(s) 701
BseBI CCWGG 1 cut(s) 319
BseCI ATCGAT 1 cut(s) 79
BseDI CCNNGG 2 cut(s) 317, 844
BseGI GGATG 3 cut(s) 176, 584, 666
BseLI CCNNNNNNNGG 5 cut(s) 64, 104, 167, 554, 632
BseMII CTCAG 2 cut(s) 457, 715
BseNI ACTGG 2 cut(s) 216, 989
BseRI GAGGAG 3 cut(s) 615, 864, 969
BseXI GCAGC 2 cut(s) 314, 359
BshFI GGCC 5 cut(s) 252, 289, 584, 706, 988
BshNI GGYRCC 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 943
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 826
BslI CCNNNNNNNGG 5 cut(s) 64, 104, 167, 554, 632
BsmFI GGGAC 1 cut(s) 826
BsnI GGCC 5 cut(s) 252, 289, 584, 706, 988
Bsp1286I GDGCHC 1 cut(s) 943
Bsp143I GATC 4 cut(s) 17, 568, 617, 951
BspANI GGCC 5 cut(s) 252, 289, 584, 706, 988
BspCNI CTCAG 2 cut(s) 456, 714
BspDI ATCGAT 1 cut(s) 79
BspHI TCATGA 1 cut(s) 686
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 2 cut(s) 576, 959
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 2 cut(s) 216, 989
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 317, 844
BssMI GATC 4 cut(s) 17, 568, 617, 951
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 844
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 114, 350, 966
BstACI GRCGYC 1 cut(s) 85
BstDEI CTNAG 3 cut(s) 443, 701, 900
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 3 cut(s) 176, 584, 666
BstKTI GATC 4 cut(s) 20, 571, 620, 954
BstMBI GATC 4 cut(s) 17, 568, 617, 951
BstMWI GCNNNNNNNGC 2 cut(s) 69, 581
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 314, 359
BstV2I GAAGAC 2 cut(s) 289, 967
BstX2I RGATCY 2 cut(s) 568, 951
BstXI CCANNNNNNTGG 1 cut(s) 834
BstYI RGATCY 2 cut(s) 568, 951
Bsu15I ATCGAT 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 701
BsuRI GGCC 5 cut(s) 252, 289, 584, 706, 988
BsuTUI ATCGAT 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 427
BtsCI GGATG 3 cut(s) 176, 584, 666
BtsIMutI CAGTG 3 cut(s) 459, 864, 982
CciI TCATGA 1 cut(s) 686
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 582
ClaI ATCGAT 1 cut(s) 79
CseI GACGC 2 cut(s) 74, 541
Csp6I GTAC 3 cut(s) 219, 795, 904
CviAII CATG 2 cut(s) 279, 687
CviQI GTAC 3 cut(s) 219, 795, 904
DdeI CTNAG 3 cut(s) 443, 701, 900
DpnI GATC 4 cut(s) 19, 570, 619, 953
DpnII GATC 4 cut(s) 17, 568, 617, 951
DraI TTTAAA 1 cut(s) 781
EaeI YGGCCR 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 844
Eco57I CTGAAG 3 cut(s) 811, 888, 976
Eco81I CCTNAGG 1 cut(s) 701
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 881
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 844
FaeI CATG 2 cut(s) 282, 690
FaqI GGGAC 1 cut(s) 826
FatI CATG 2 cut(s) 278, 686
FbaI TGATCA 2 cut(s) 17, 617
Fnu4HI GCNGC 2 cut(s) 328, 373
FokI GGATG 3 cut(s) 183, 591, 653
Fsp4HI GCNGC 2 cut(s) 328, 373
FspBI CTAG 1 cut(s) 478
GluI GCNGC 2 cut(s) 328, 373
GsuI CTGGAG 1 cut(s) 957
HaeIII GGCC 5 cut(s) 252, 289, 584, 706, 988
HapII CCGG 1 cut(s) 249
HgaI GACGC 2 cut(s) 74, 541
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 2 cut(s) 282, 690
HincII GTYRAC 2 cut(s) 89, 244
HindII GTYRAC 2 cut(s) 89, 244
HindIII AAGCTT 1 cut(s) 831
HinfI GANTC 2 cut(s) 711, 932
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 1 cut(s) 249
HphI GGTGA 2 cut(s) 27, 640
Hpy166II GTNNAC 2 cut(s) 89, 244
Hpy188I TCNGA 7 cut(s) 301, 364, 405, 446, 716, 956, 1014
Hpy188III TCNNGA 8 cut(s) 354, 378, 478, 539, 548, 629, 687, 936
Hpy8I GTNNAC 2 cut(s) 89, 244
HpyAV CCTTC 4 cut(s) 375, 626, 765, 863
HpyCH4III ACNGT 3 cut(s) 114, 350, 966
HpyCH4V TGCA 2 cut(s) 390, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 581
HpyF3I CTNAG 3 cut(s) 443, 701, 900
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 2 cut(s) 282, 690
Ksp22I TGATCA 2 cut(s) 17, 617
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 17, 568, 617, 951
LmnI GCTCC 2 cut(s) 335, 938
Lsp1109I GCAGC 2 cut(s) 314, 359
LweI GCATC 3 cut(s) 149, 544, 707
MaeI CTAG 1 cut(s) 478
MaeIII GTNAC 2 cut(s) 646, 996
MalI GATC 4 cut(s) 19, 570, 619, 953
MboI GATC 4 cut(s) 17, 568, 617, 951
MboII GAAGA 7 cut(s) 117, 215, 294, 528, 690, 969, 972
MfeI CAATTG 1 cut(s) 391
MflI RGATCY 2 cut(s) 568, 951
MhlI GDGCHC 1 cut(s) 943
MluCI AATT 8 cut(s) 34, 295, 304, 311, 391, 507, 642, 881
MmeI TCCRAC 1 cut(s) 401
MseI TTAA 6 cut(s) 42, 243, 337, 489, 694, 780
MslI CAYNNNNRTG 2 cut(s) 601, 946
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 391
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 2 cut(s) 69, 581
NdeII GATC 4 cut(s) 17, 568, 617, 951
NlaIII CATG 2 cut(s) 282, 690
NlaIV GGNNCC 1 cut(s) 181
NmeAIII GCCGAG 1 cut(s) 732
NmuCI GTSAC 2 cut(s) 646, 996
PagI TCATGA 1 cut(s) 686
PfeI GAWTC 2 cut(s) 711, 932
PflFI GACNNNGTC 1 cut(s) 966
PkrI GCNGC 2 cut(s) 329, 374
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 582
PsuI RGATCY 2 cut(s) 568, 951
PsyI GACNNNGTC 1 cut(s) 966
RsaI GTAC 3 cut(s) 220, 796, 905
RsaNI GTAC 3 cut(s) 219, 795, 904
RseI CAYNNNNRTG 2 cut(s) 601, 946
SaqAI TTAA 6 cut(s) 42, 243, 337, 489, 694, 780
SatI GCNGC 2 cut(s) 328, 373
Sau3AI GATC 4 cut(s) 17, 568, 617, 951
Sau96I GGNCC 1 cut(s) 582
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 943
SfaNI GCATC 3 cut(s) 149, 544, 707
SmiMI CAYNNNNRTG 2 cut(s) 601, 946
SmlI CTYRAG 2 cut(s) 376, 627
SmoI CTYRAG 2 cut(s) 376, 627
Sse9I AATT 8 cut(s) 34, 295, 304, 311, 391, 507, 642, 881
SspMI CTAG 1 cut(s) 478
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 3 cut(s) 114, 350, 966
TaqI TCGA 2 cut(s) 79, 973
TasI AATT 8 cut(s) 34, 295, 304, 311, 391, 507, 642, 881
TatI WGTACW 1 cut(s) 794
TfiI GAWTC 2 cut(s) 711, 932
Tru1I TTAA 6 cut(s) 42, 243, 337, 489, 694, 780
Tru9I TTAA 6 cut(s) 42, 243, 337, 489, 694, 780
TscAI CASTG 3 cut(s) 459, 871, 989
TseFI GTSAC 2 cut(s) 646, 996
TseI GCWGC 2 cut(s) 327, 372
Tsp45I GTSAC 2 cut(s) 646, 996
TspDTI ATGAA 5 cut(s) 154, 295, 520, 651, 703
TspRI CASTG 3 cut(s) 459, 871, 989
Tth111I GACNNNGTC 1 cut(s) 966
XagI CCTNNNNNAGG 1 cut(s) 630
XapI RAATTY 1 cut(s) 881
XbaI TCTAGA 1 cut(s) 477
XspI CTAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.