Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003692

Physical Location & Seq

Genomic Coordinates Forward (+)

78982054 .. 78982370

Gene Structure 317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G045130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTGGCATGAGGATGGCCATTCAATTCAGAAAATTTCTCATACTGTTCAAGAATATCTGATGGACGCTGCTCAAAAAGGATTTGCAATTGATTGGGTCAGATTGTGCAATGAGGTTGGACTGACACAAAAGGTTTTCTCAGATATTCAGTGTGCCATTTCAAAGGCTGGCTCTAGAGAAAAGTTATCGCCTATCAAAATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000217 GO:0000287 GO:0000400 GO:0000403 GO:0000405 GO:0000723 GO:0000724 GO:0000725 GO:0000731 GO:0000781 GO:0001302 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003684 GO:0003824 GO:0004003 GO:0004386 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0005730 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007154 GO:0007275 GO:0007568 GO:0007569 GO:0008026 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008408 GO:0009058 GO:0009059 GO:0009267 GO:0009314 GO:0009378 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009893 GO:0009987 GO:0009991 GO:0010212 GO:0010225 GO:0010259 GO:0010332 GO:0010604 GO:0010941 GO:0015630 GO:0016043 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030145 GO:0031297 GO:0031323 GO:0031325 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032200 GO:0032356 GO:0032357 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0040009 GO:0042592 GO:0042594 GO:0042623 GO:0042802 GO:0042803 GO:0042981 GO:0042995 GO:0043005 GO:0043067 GO:0043085 GO:0043138 GO:0043140 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0044806 GO:0044877 GO:0045005 GO:0045911 GO:0045935 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051179 GO:0051276 GO:0051336 GO:0051345 GO:0051641 GO:0051716 GO:0051880 GO:0060249 GO:0060255 GO:0060542 GO:0061749 GO:0061820 GO:0061821 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070336 GO:0070337 GO:0070727 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071496 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090657 GO:0097159 GO:0097458 GO:0098530 GO:0098687 GO:0104004 GO:0120025 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902570 GO:1905773

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD HRDC HTH_40 Helicase_C RQC RecQ_Zn_bind

Protein Analysis

68

Amino Acids

7.72

Weight (kDa)

6.81

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41250 FvH4_3g41250 FvH4_3g41250
malus_domestica	MD03G1046200.v1.1 MD11G1048500.v1.1
prunus_persica	Prupe.6G037500_v2.0.a1
pyrus_communis	pycom03g03640
rosa_chinensis	RchiOBHm_Chr5g0074051 RchiOBHm_Chr5g0074061
rosa_laevigata	RLG00000036442 RLG00000036447
rosa_multiflora	Rmu_co8312713.1_g000001 Rmu_sc0004053.1_g000009 Rmu_sc0011497.1_g000014 Rmu_sc0015038.1_g000001 Rmu_sc0036241.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007340 Rroxscaffold_1G00007350 Rroxscaffold_4G00327760
rosa_rugosa	Rorug05G0428500 Rorug05G0428500 Rorug05G0428600 Rorug05G0428700 Rorug05G0428800
rosa_samantha	Rh5AG485900 Rh5AG486300 Rh5AG486500 Rh5BG506100 Rh5BG506800 Rh5CG529800 Rh5CG530300 Rh5DG518800
rosa_wichuraiana	Rw5G045100 Rw5G045130 Rw5G045150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	33
AgsI	TTSAA	3 cut(s)	24, 50, 162
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	8, 55
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bse3DI	GCAATG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	55
BshFI	GGCC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	74
CviAII	CATG	1 cut(s)	8
CviJI	RGCY	3 cut(s)	18, 167, 171
CviKI_1	RGCY	3 cut(s)	18, 167, 171
DdeI	CTNAG	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	16
FaeI	CATG	1 cut(s)	11
FaiI	YATR	2 cut(s)	9, 42
FatI	CATG	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	69
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	18
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	11
Hpy188I	TCNGA	4 cut(s)	30, 60, 101, 142
Hpy188III	TCNNGA	2 cut(s)	50, 174
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	2 cut(s)	86, 108
HpyF3I	CTNAG	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	11
LpnPI	CCDG	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	174
MfeI	CAATTG	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	4 cut(s)	24, 33, 87, 202
MluNI	TGGCCA	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	2 cut(s)	4, 106
Mox20I	TGGCCA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	12
Msp20I	TGGCCA	1 cut(s)	18
MunI	CAATTG	1 cut(s)	87
NlaIII	CATG	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	12
SatI	GCNGC	1 cut(s)	69
SetI	ASST	2 cut(s)	117, 135
SgeI	CNNG	4 cut(s)	20, 62, 180, 186
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	4 cut(s)	24, 33, 87, 202
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	46
TasI	AATT	4 cut(s)	24, 33, 87, 202
TscAI	CASTG	1 cut(s)	155
TseI	GCWGC	1 cut(s)	68
TspRI	CASTG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	173
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.