Belongs to the helicase family. RecQ subfamily
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g41250 FvH4_3g41250 FvH4_3g41250 |
| malus_domestica | MD03G1046200.v1.1 MD11G1048500.v1.1 |
| prunus_persica | Prupe.6G037500_v2.0.a1 |
| pyrus_communis | pycom03g03640 |
| rosa_chinensis | RchiOBHm_Chr5g0074051 RchiOBHm_Chr5g0074061 |
| rosa_laevigata | RLG00000036442 RLG00000036447 |
| rosa_multiflora | Rmu_co8312713.1_g000001 Rmu_sc0004053.1_g000009 Rmu_sc0011497.1_g000014 Rmu_sc0015038.1_g000001 Rmu_sc0036241.1_g000003 |
| rosa_roxburghii | Rroxscaffold_1G00007340 Rroxscaffold_1G00007350 Rroxscaffold_4G00327760 |
| rosa_rugosa | Rorug05G0428500 Rorug05G0428500 Rorug05G0428600 Rorug05G0428700 Rorug05G0428800 |
| rosa_samantha | Rh5AG485900 Rh5AG486300 Rh5AG486500 Rh5BG506100 Rh5BG506800 Rh5CG529800 Rh5CG530300 Rh5DG518800 |
| rosa_wichuraiana | Rw5G045100 Rw5G045130 Rw5G045150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 644, 890 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 314, 1172 |
| AccI | GTMKAC | 1 cut(s) | 874 |
| AciI | CCGC | 2 cut(s) | 1089, 1322 |
| AclWI | GGATC | 1 cut(s) | 59 |
| AcsI | RAATTY | 1 cut(s) | 488 |
| AcuI | CTGAAG | 1 cut(s) | 584 |
| AfaI | GTAC | 6 cut(s) | 73, 134, 495, 909, 1084, 1378 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 148, 314, 1021, 1172 |
| AflIII | ACRYGT | 1 cut(s) | 1032 |
| AgsI | TTSAA | 7 cut(s) | 40, 347, 370, 442, 510, 1070, 1423 |
| AhlI | ACTAGT | 1 cut(s) | 74 |
| AjnI | CCWGG | 1 cut(s) | 759 |
| AluBI | AGCT | 7 cut(s) | 59, 171, 473, 617, 839, 884, 1162 |
| AluI | AGCT | 7 cut(s) | 59, 171, 473, 617, 839, 884, 1162 |
| Alw26I | GTCTC | 1 cut(s) | 1446 |
| AlwI | GGATC | 1 cut(s) | 59 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 174 |
| Ama87I | CYCGRG | 1 cut(s) | 1125 |
| AoxI | GGCC | 3 cut(s) | 15, 244, 1128 |
| ApeKI | GCWGC | 2 cut(s) | 732, 1145 |
| ApoI | RAATTY | 1 cut(s) | 488 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 856, 888 |
| AseI | ATTAAT | 1 cut(s) | 1226 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 972 |
| AspS9I | GGNCC | 3 cut(s) | 244, 1128, 1307 |
| AvaI | CYCGRG | 1 cut(s) | 1125 |
| AvaII | GGWCC | 1 cut(s) | 1307 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1098, 1130 |
| BauI | CACGAG | 1 cut(s) | 618 |
| BbvI | GCAGC | 2 cut(s) | 719, 1132 |
| BccI | CCATC | 8 cut(s) | 253, 497, 598, 779, 985, 1021, 1051, 1240 |
| BciT130I | CCWGG | 1 cut(s) | 761 |
| BclI | TGATCA | 1 cut(s) | 1312 |
| BcoDI | GTCTC | 1 cut(s) | 1446 |
| BcuI | ACTAGT | 1 cut(s) | 74 |
| BfaI | CTAG | 3 cut(s) | 75, 1038, 1328 |
| BfmI | CTRYAG | 1 cut(s) | 1104 |
| BisI | GCNGC | 2 cut(s) | 733, 1146 |
| BlsI | GCNGC | 2 cut(s) | 734, 1147 |
| Bme1390I | CCNGG | 1 cut(s) | 761 |
| Bme18I | GGWCC | 1 cut(s) | 1307 |
| BmeT110I | CYCGRG | 1 cut(s) | 1125 |
| BmgT120I | GGNCC | 3 cut(s) | 244, 1128, 1307 |
| BmiI | GGNNCC | 2 cut(s) | 245, 400 |
| BmrFI | CCNGG | 1 cut(s) | 761 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1426 |
| BpmI | CTGGAG | 1 cut(s) | 873 |
| BpuEI | CTTGAG | 2 cut(s) | 8, 459 |
| BsaAI | YACGTR | 1 cut(s) | 287 |
| BsaI | GGTCTC | 1 cut(s) | 1446 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 148, 314, 1021, 1172 |
| Bse1I | ACTGG | 2 cut(s) | 1337, 1344 |
| Bse3DI | GCAATG | 1 cut(s) | 555 |
| BseBI | CCWGG | 1 cut(s) | 761 |
| BseGI | GGATG | 1 cut(s) | 264 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 148, 314, 1021, 1172 |
| BseMI | GCAATG | 1 cut(s) | 555 |
| BseMII | CTCAG | 1 cut(s) | 51 |
| BseNI | ACTGG | 2 cut(s) | 1337, 1344 |
| BseXI | GCAGC | 2 cut(s) | 719, 1132 |
| BsgI | GTGCAG | 1 cut(s) | 508 |
| BshFI | GGCC | 3 cut(s) | 17, 246, 1130 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1125 |
| BslFI | GGGAC | 2 cut(s) | 290, 365 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 148, 314, 1021, 1172 |
| BsmAI | GTCTC | 1 cut(s) | 1446 |
| BsmFI | GGGAC | 2 cut(s) | 290, 365 |
| BsmI | GAATGC | 2 cut(s) | 291, 1065 |
| BsnI | GGCC | 3 cut(s) | 17, 246, 1130 |
| Bso31I | GGTCTC | 1 cut(s) | 1446 |
| BsoBI | CYCGRG | 1 cut(s) | 1125 |
| Bsp1407I | TGTACA | 1 cut(s) | 132 |
| Bsp143I | GATC | 3 cut(s) | 51, 406, 1312 |
| BspACI | CCGC | 2 cut(s) | 1089, 1322 |
| BspANI | GGCC | 3 cut(s) | 17, 246, 1130 |
| BspCNI | CTCAG | 1 cut(s) | 52 |
| BspHI | TCATGA | 1 cut(s) | 463 |
| BspLI | GGNNCC | 2 cut(s) | 245, 400 |
| BspPI | GGATC | 1 cut(s) | 59 |
| BspQI | GCTCTTC | 1 cut(s) | 874 |
| BspTNI | GGTCTC | 1 cut(s) | 1446 |
| BsrDI | GCAATG | 1 cut(s) | 555 |
| BsrGI | TGTACA | 1 cut(s) | 132 |
| BsrI | ACTGG | 2 cut(s) | 1337, 1344 |
| BssMI | GATC | 3 cut(s) | 51, 406, 1312 |
| BssSI | CACGAG | 1 cut(s) | 618 |
| Bst2BI | CACGAG | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 1 cut(s) | 761 |
| Bst4CI | ACNGT | 1 cut(s) | 94 |
| Bst6I | CTCTTC | 3 cut(s) | 734, 874, 1427 |
| BstAUI | TGTACA | 1 cut(s) | 132 |
| BstBAI | YACGTR | 1 cut(s) | 287 |
| BstC8I | GCNNGC | 3 cut(s) | 15, 806, 1063 |
| BstDEI | CTNAG | 3 cut(s) | 60, 188, 1295 |
| BstF5I | GGATG | 1 cut(s) | 264 |
| BstKTI | GATC | 3 cut(s) | 54, 409, 1315 |
| BstMAI | GTCTC | 1 cut(s) | 1446 |
| BstMBI | GATC | 3 cut(s) | 51, 406, 1312 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 677, 1168 |
| BstNI | CCWGG | 1 cut(s) | 761 |
| BstNSI | RCATGY | 3 cut(s) | 156, 1036, 1089 |
| BstSCI | CCNGG | 1 cut(s) | 759 |
| BstSFI | CTRYAG | 1 cut(s) | 1104 |
| BstV1I | GCAGC | 2 cut(s) | 719, 1132 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 767, 1351 |
| BsuRI | GGCC | 3 cut(s) | 17, 246, 1130 |
| BtsCI | GGATG | 1 cut(s) | 264 |
| BtsI | GCAGTG | 2 cut(s) | 226, 1166 |
| BtsIMutI | CAGTG | 6 cut(s) | 90, 226, 560, 1166, 1344, 1351 |
| Cac8I | GCNNGC | 3 cut(s) | 15, 806, 1063 |
| CaiI | CAGNNNCTG | 1 cut(s) | 174 |
| CciI | TCATGA | 1 cut(s) | 463 |
| Cfr13I | GGNCC | 3 cut(s) | 244, 1128, 1307 |
| Csp6I | GTAC | 6 cut(s) | 72, 133, 494, 908, 1083, 1377 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 268, 303 |
| CviQI | GTAC | 6 cut(s) | 72, 133, 494, 908, 1083, 1377 |
| DdeI | CTNAG | 3 cut(s) | 60, 188, 1295 |
| DpnI | GATC | 3 cut(s) | 53, 408, 1314 |
| DpnII | GATC | 3 cut(s) | 51, 406, 1312 |
| Eam1104I | CTCTTC | 3 cut(s) | 734, 874, 1427 |
| EarI | CTCTTC | 3 cut(s) | 734, 874, 1427 |
| Eco31I | GGTCTC | 1 cut(s) | 1446 |
| Eco32I | GATATC | 1 cut(s) | 127 |
| Eco47I | GGWCC | 1 cut(s) | 1307 |
| Eco57I | CTGAAG | 1 cut(s) | 584 |
| Eco88I | CYCGRG | 1 cut(s) | 1125 |
| EcoRII | CCWGG | 1 cut(s) | 759 |
| EcoRV | GATATC | 1 cut(s) | 127 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1035, 1067 |
| FaqI | GGGAC | 2 cut(s) | 290, 365 |
| FbaI | TGATCA | 1 cut(s) | 1312 |
| FblI | GTMKAC | 1 cut(s) | 874 |
| Fnu4HI | GCNGC | 2 cut(s) | 733, 1146 |
| FokI | GGATG | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 2 cut(s) | 733, 1146 |
| FspBI | CTAG | 3 cut(s) | 75, 1038, 1328 |
| GluI | GCNGC | 2 cut(s) | 733, 1146 |
| GsuI | CTGGAG | 1 cut(s) | 873 |
| HaeIII | GGCC | 3 cut(s) | 17, 246, 1130 |
| HincII | GTYRAC | 1 cut(s) | 875 |
| HindII | GTYRAC | 1 cut(s) | 875 |
| HindIII | AAGCTT | 1 cut(s) | 1160 |
| HinfI | GANTC | 7 cut(s) | 160, 198, 448, 588, 626, 749, 1423 |
| Hpy166II | GTNNAC | 2 cut(s) | 770, 875 |
| Hpy188I | TCNGA | 8 cut(s) | 56, 238, 447, 982, 1056, 1095, 1278, 1431 |
| Hpy188III | TCNNGA | 7 cut(s) | 97, 164, 256, 464, 476, 1038, 1383 |
| Hpy8I | GTNNAC | 2 cut(s) | 770, 875 |
| Hpy99I | CGWCG | 1 cut(s) | 879 |
| HpyAV | CCTTC | 3 cut(s) | 559, 933, 1015 |
| HpyCH4III | ACNGT | 1 cut(s) | 94 |
| HpyCH4IV | ACGT | 2 cut(s) | 286, 540 |
| HpyCH4V | TGCA | 9 cut(s) | 13, 231, 326, 525, 560, 936, 1065, 1171, 1196 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 677, 1168 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 188, 1295 |
| HpySE526I | ACGT | 2 cut(s) | 286, 540 |
| Ksp22I | TGATCA | 1 cut(s) | 1312 |
| Kzo9I | GATC | 3 cut(s) | 51, 406, 1312 |
| LguI | GCTCTTC | 1 cut(s) | 874 |
| LmnI | GCTCC | 2 cut(s) | 404, 1285 |
| Lsp1109I | GCAGC | 2 cut(s) | 719, 1132 |
| MaeI | CTAG | 3 cut(s) | 75, 1038, 1328 |
| MaeII | ACGT | 2 cut(s) | 286, 540 |
| MaeIII | GTNAC | 3 cut(s) | 282, 956, 1339 |
| MalI | GATC | 3 cut(s) | 53, 408, 1314 |
| MboI | GATC | 3 cut(s) | 51, 406, 1312 |
| MboII | GAAGA | 7 cut(s) | 382, 751, 891, 1043, 1106, 1418, 1444 |
| MlyI | GAGTC | 2 cut(s) | 442, 758 |
| MnlI | CCTC | 7 cut(s) | 41, 460, 562, 839, 894, 1335, 1357 |
| MroXI | GAANNNNTTC | 1 cut(s) | 972 |
| MseI | TTAA | 5 cut(s) | 320, 360, 534, 579, 1226 |
| MspR9I | CCNGG | 1 cut(s) | 761 |
| Mva1269I | GAATGC | 2 cut(s) | 291, 1065 |
| MvaI | CCWGG | 1 cut(s) | 761 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 677, 1168 |
| NdeII | GATC | 3 cut(s) | 51, 406, 1312 |
| NlaIV | GGNNCC | 2 cut(s) | 245, 400 |
| NmeAIII | GCCGAG | 2 cut(s) | 128, 133 |
| NmuCI | GTSAC | 1 cut(s) | 1339 |
| NspI | RCATGY | 3 cut(s) | 156, 1036, 1089 |
| PagI | TCATGA | 1 cut(s) | 463 |
| PciI | ACATGT | 1 cut(s) | 1032 |
| PciSI | GCTCTTC | 1 cut(s) | 874 |
| PctI | GAATGC | 2 cut(s) | 291, 1065 |
| PdmI | GAANNNNTTC | 1 cut(s) | 972 |
| PfeI | GAWTC | 5 cut(s) | 160, 198, 588, 626, 1423 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 314, 1172 |
| PkrI | GCNGC | 2 cut(s) | 734, 1147 |
| PleI | GAGTC | 2 cut(s) | 442, 757 |
| PpsI | GAGTC | 2 cut(s) | 442, 757 |
| Ppu21I | YACGTR | 1 cut(s) | 287 |
| PscI | ACATGT | 1 cut(s) | 1032 |
| PshBI | ATTAAT | 1 cut(s) | 1226 |
| PsiI | TTATAA | 2 cut(s) | 644, 890 |
| Psp6I | CCWGG | 1 cut(s) | 759 |
| PspGI | CCWGG | 1 cut(s) | 759 |
| PspN4I | GGNNCC | 2 cut(s) | 245, 400 |
| PspPI | GGNCC | 3 cut(s) | 244, 1128, 1307 |
| PstNI | CAGNNNCTG | 1 cut(s) | 174 |
| RsaI | GTAC | 6 cut(s) | 73, 134, 495, 909, 1084, 1378 |
| RsaNI | GTAC | 6 cut(s) | 72, 133, 494, 908, 1083, 1377 |
| SalI | GTCGAC | 1 cut(s) | 873 |
| SapI | GCTCTTC | 1 cut(s) | 874 |
| SaqAI | TTAA | 5 cut(s) | 320, 360, 534, 579, 1226 |
| SatI | GCNGC | 2 cut(s) | 733, 1146 |
| Sau3AI | GATC | 3 cut(s) | 51, 406, 1312 |
| Sau96I | GGNCC | 3 cut(s) | 244, 1128, 1307 |
| SchI | GAGTC | 2 cut(s) | 442, 758 |
| ScrFI | CCNGG | 1 cut(s) | 761 |
| SfcI | CTRYAG | 1 cut(s) | 1104 |
| SinI | GGWCC | 1 cut(s) | 1307 |
| SmlI | CTYRAG | 2 cut(s) | 23, 474 |
| SmoI | CTYRAG | 2 cut(s) | 23, 474 |
| SpeI | ACTAGT | 1 cut(s) | 74 |
| SsiI | CCGC | 2 cut(s) | 1089, 1322 |
| SspI | AATATT | 1 cut(s) | 917 |
| SspMI | CTAG | 3 cut(s) | 75, 1038, 1328 |
| StyD4I | CCNGG | 1 cut(s) | 759 |
| TaaI | ACNGT | 1 cut(s) | 94 |
| TaiI | ACGT | 2 cut(s) | 289, 543 |
| TaqI | TCGA | 1 cut(s) | 874 |
| TatI | WGTACW | 3 cut(s) | 132, 907, 1376 |
| TfiI | GAWTC | 5 cut(s) | 160, 198, 588, 626, 1423 |
| Tru1I | TTAA | 5 cut(s) | 320, 360, 534, 579, 1226 |
| Tru9I | TTAA | 5 cut(s) | 320, 360, 534, 579, 1226 |
| TscAI | CASTG | 6 cut(s) | 97, 233, 567, 1173, 1344, 1351 |
| TseFI | GTSAC | 1 cut(s) | 1339 |
| TseI | GCWGC | 2 cut(s) | 732, 1145 |
| Tsp45I | GTSAC | 1 cut(s) | 1339 |
| TspDTI | ATGAA | 6 cut(s) | 234, 389, 452, 544, 666, 1412 |
| TspRI | CASTG | 6 cut(s) | 97, 233, 567, 1173, 1344, 1351 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 314, 1172 |
| VpaK11BI | GGWCC | 1 cut(s) | 1307 |
| VspI | ATTAAT | 1 cut(s) | 1226 |
| XapI | RAATTY | 1 cut(s) | 488 |
| XbaI | TCTAGA | 1 cut(s) | 1037 |
| XceI | RCATGY | 3 cut(s) | 156, 1036, 1089 |
| XmiI | GTMKAC | 1 cut(s) | 874 |
| XmnI | GAANNNNTTC | 1 cut(s) | 972 |
| XspI | CTAG | 3 cut(s) | 75, 1038, 1328 |