Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015038.1

Orthogroup ID

OG0003692

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 4533

Gene Structure 4532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1423 bp

atgcagtctatgcaggccattctcaagcaatattttgggttttcttcatttcggccataccaagaggaagtgattgagaaaatcatagcaggaagggactctttgattgtcatggccactggaagtggcaagtctttgtgctatcaagtgcctcctttggttgttggaaagactggtgtggttgtgagtcctcttatatccttaatgcaagatcaggtaatgtctttgaaacaaagagggatcagagccgagtatatgggtagtagtcaatcggataacactgtccagagccgagccgagagtggtcaatttgatatcttgtacatgacccctgaaaaggcatgtgtgattcctgtcagcttctggtcaaaattactaagggctgggatctgcttgtttgctgttgatgaagcacactgcatatcggagtggggccatgatttcagggtggaatacaagcaattggacaagttacgtggcattcttgttggtgtcccatttattggcttaactgcaactgctactgaaaaggttcgaatggacattgttaattccttgaagatgagaaacccatatgtcaaaataggttcatttgatcgtggaaatctgttctatggtgtcaagttattcaatcggactcaatcatttgttcatgagctggttcaagaagtttccaaatttgtacgcacagatggttcaacaataatatactgcacgacaattaaagacgttgatcaggtattcaattcactgaaggaggtgggtattaaagctggaatatatcatggtcaaatggataataaagctcgtgccgaatcccatagattatttataagagatgaactagatgtcatggttgctactattgcttttggaatgggtattgataagccaaacataagacaagtaatccactatggctgcccgaagagtttggagtcttattaccaggaaagtggacgatgtggtagagatggtatggcttctgtctgctggctctattacacaagaagcgacttcacaaaagctgacttttatgctggagagtgtcatacagaaagtcaacgaagagctgttgtagagtcattgatggcagcacaacagtattgcttatcaacaacttgcagaaggaagttcttgcttggtcactttggggaaatctttccatctgataaatgtggtaattgtgataattgtatttcctcaaagaaggagagggacatgtctagagaagcatttcttctcatggcttgcattcaatcatgtcggggtaaatggggtctgaatatgcctgtagatattcttcgtggctcacgggccaaaaagattcttgatgcccaatttgacaagcttccactgcatggactcgggaaagactattcagcaaattggtggaaagcactttcttaccaattaatctctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000217 GO:0000287 GO:0000400 GO:0000403 GO:0000405 GO:0000723 GO:0000724 GO:0000725 GO:0000731 GO:0000781 GO:0001302 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003684 GO:0003824 GO:0004003 GO:0004386 GO:0004518 GO:0004527 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0005730 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006284 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007154 GO:0007275 GO:0007568 GO:0007569 GO:0008026 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008408 GO:0009058 GO:0009059 GO:0009267 GO:0009314 GO:0009378 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009893 GO:0009987 GO:0009991 GO:0010212 GO:0010225 GO:0010259 GO:0010332 GO:0010604 GO:0010941 GO:0015630 GO:0016043 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030145 GO:0031297 GO:0031323 GO:0031325 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032200 GO:0032356 GO:0032357 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0040008 GO:0040009 GO:0042592 GO:0042594 GO:0042623 GO:0042802 GO:0042803 GO:0042981 GO:0042995 GO:0043005 GO:0043067 GO:0043085 GO:0043138 GO:0043140 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0044806 GO:0044877 GO:0045005 GO:0045911 GO:0045935 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051179 GO:0051276 GO:0051336 GO:0051345 GO:0051641 GO:0051716 GO:0051880 GO:0060249 GO:0060255 GO:0060542 GO:0061749 GO:0061820 GO:0061821 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070336 GO:0070337 GO:0070727 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071496 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090657 GO:0097159 GO:0097458 GO:0098530 GO:0098687 GO:0104004 GO:0120025 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902570 GO:1905773

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD HRDC HTH_40 Helicase_C RQC RecQ_Zn_bind

Protein Analysis

474

Amino Acids

53.52

Weight (kDa)

8.85

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003692)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41250 FvH4_3g41250 FvH4_3g41250
malus_domestica	MD03G1046200.v1.1 MD11G1048500.v1.1
prunus_persica	Prupe.6G037500_v2.0.a1
pyrus_communis	pycom03g03640
rosa_chinensis	RchiOBHm_Chr5g0074051 RchiOBHm_Chr5g0074061
rosa_laevigata	RLG00000036442 RLG00000036447
rosa_multiflora	Rmu_co8312713.1_g000001 Rmu_sc0004053.1_g000009 Rmu_sc0011497.1_g000014 Rmu_sc0015038.1_g000001 Rmu_sc0036241.1_g000003
rosa_roxburghii	Rroxscaffold_1G00007340 Rroxscaffold_1G00007350 Rroxscaffold_4G00327760
rosa_rugosa	Rorug05G0428500 Rorug05G0428500 Rorug05G0428600 Rorug05G0428700 Rorug05G0428800
rosa_samantha	Rh5AG485900 Rh5AG486300 Rh5AG486500 Rh5BG506100 Rh5BG506800 Rh5CG529800 Rh5CG530300 Rh5DG518800
rosa_wichuraiana	Rw5G045100 Rw5G045130 Rw5G045150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	833
AccB7I	CCANNNNNTGG	2 cut(s)	503, 1361
AclWI	GGATC	2 cut(s)	248, 395
AcoI	YGGCCR	2 cut(s)	53, 114
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	773
AfaI	GTAC	2 cut(s)	323, 684
AfiI	CCNNNNNNNGG	3 cut(s)	337, 503, 1361
AflIII	ACRYGT	1 cut(s)	1221
AgsI	TTSAA	7 cut(s)	229, 559, 631, 665, 699, 745, 1259
AjnI	CCWGG	1 cut(s)	948
AluBI	AGCT	7 cut(s)	360, 658, 773, 806, 1028, 1073, 1351
AluI	AGCT	7 cut(s)	360, 658, 773, 806, 1028, 1073, 1351
AlwI	GGATC	2 cut(s)	248, 395
AlwNI	CAGNNNCTG	1 cut(s)	363
Ama87I	CYCGRG	1 cut(s)	1367
AoxI	GGCC	5 cut(s)	15, 53, 114, 433, 1317
ApeKI	GCWGC	2 cut(s)	921, 1094
ApoI	RAATTY	1 cut(s)	677
AseI	ATTAAT	1 cut(s)	1415
Asp700I	GAANNNNTTC	3 cut(s)	531, 1161, 1236
AspS9I	GGNCC	2 cut(s)	433, 1317
AsuII	TTCGAA	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	1367
BalI	TGGCCA	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	1287, 1319
BauI	CACGAG	1 cut(s)	807
BbvI	GCAGC	2 cut(s)	908, 1106
BccI	CCATC	4 cut(s)	686, 968, 1084, 1174
BciT130I	CCWGG	1 cut(s)	950
BclI	TGATCA	1 cut(s)	733
BfaI	CTAG	2 cut(s)	845, 1227
BfmI	CTRYAG	1 cut(s)	1293
BisI	GCNGC	2 cut(s)	922, 1095
BlsI	GCNGC	2 cut(s)	923, 1096
Bme1390I	CCNGG	1 cut(s)	950
BmeT110I	CYCGRG	1 cut(s)	1367
BmgT120I	GGNCC	2 cut(s)	433, 1317
BmiI	GGNNCC	1 cut(s)	434
BmrFI	CCNGG	1 cut(s)	950
BmsI	GCATC	1 cut(s)	1324
BpmI	CTGGAG	1 cut(s)	1062
Bpu14I	TTCGAA	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	8
BsaAI	YACGTR	1 cut(s)	476
Bsc4I	CCNNNNNNNGG	3 cut(s)	337, 503, 1361
Bse1I	ACTGG	2 cut(s)	124, 178
BseBI	CCWGG	1 cut(s)	950
BseLI	CCNNNNNNNGG	3 cut(s)	337, 503, 1361
BseNI	ACTGG	2 cut(s)	124, 178
BseXI	GCAGC	2 cut(s)	908, 1106
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	697
BshFI	GGCC	5 cut(s)	17, 55, 116, 435, 1319
BsiHKCI	CYCGRG	1 cut(s)	1367
BslFI	GGGAC	3 cut(s)	110, 479, 1232
BslI	CCNNNNNNNGG	3 cut(s)	337, 503, 1361
BsmFI	GGGAC	3 cut(s)	110, 479, 1232
BsmI	GAATGC	2 cut(s)	480, 1254
BsnI	GGCC	5 cut(s)	17, 55, 116, 435, 1319
BsoBI	CYCGRG	1 cut(s)	1367
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	211, 240, 387, 595, 733
BspANI	GGCC	5 cut(s)	17, 55, 116, 435, 1319
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	1 cut(s)	434
BspPI	GGATC	2 cut(s)	248, 395
BspQI	GCTCTTC	1 cut(s)	1063
BspT104I	TTCGAA	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	124, 178
BssMI	GATC	5 cut(s)	211, 240, 387, 595, 733
BssSI	CACGAG	1 cut(s)	807
Bst2BI	CACGAG	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	2 cut(s)	283, 1104
Bst6I	CTCTTC	2 cut(s)	923, 1063
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	3 cut(s)	15, 995, 1252
BstDEI	CTNAG	1 cut(s)	377
BstKTI	GATC	5 cut(s)	214, 243, 390, 598, 736
BstMBI	GATC	5 cut(s)	211, 240, 387, 595, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 866, 1357
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	2 cut(s)	345, 1225
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	1 cut(s)	1293
BstV1I	GCAGC	2 cut(s)	908, 1106
BstX2I	RGATCY	1 cut(s)	387
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	5 cut(s)	17, 55, 116, 435, 1319
BtsI	GCAGTG	2 cut(s)	415, 1355
BtsIMutI	CAGTG	5 cut(s)	117, 279, 415, 749, 1355
Cac8I	GCNNGC	3 cut(s)	15, 995, 1252
CaiI	CAGNNNCTG	1 cut(s)	363
CciI	TCATGA	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	433, 1317
Csp6I	GTAC	2 cut(s)	322, 683
CspCI	CAANNNNNGTGG	2 cut(s)	457, 492
CviQI	GTAC	2 cut(s)	322, 683
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	5 cut(s)	213, 242, 389, 597, 735
DpnII	GATC	5 cut(s)	211, 240, 387, 595, 733
EaeI	YGGCCR	2 cut(s)	53, 114
Eam1104I	CTCTTC	2 cut(s)	923, 1063
EarI	CTCTTC	2 cut(s)	923, 1063
Eco32I	GATATC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	1367
EcoRII	CCWGG	1 cut(s)	948
EcoRV	GATATC	1 cut(s)	316
FalI	AAGNNNNNCTT	4 cut(s)	85, 117, 1224, 1256
FaqI	GGGAC	3 cut(s)	110, 479, 1232
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	2 cut(s)	922, 1095
Fsp4HI	GCNGC	2 cut(s)	922, 1095
FspBI	CTAG	2 cut(s)	845, 1227
GluI	GCNGC	2 cut(s)	922, 1095
GsaI	CCCAGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	1062
HaeIII	GGCC	5 cut(s)	17, 55, 116, 435, 1319
HincII	GTYRAC	1 cut(s)	1064
HindII	GTYRAC	1 cut(s)	1064
HindIII	AAGCTT	1 cut(s)	1349
HinfI	GANTC	9 cut(s)	98, 187, 349, 637, 815, 938, 1082, 1327, 1365
Hpy166II	GTNNAC	2 cut(s)	959, 1064
Hpy188I	TCNGA	6 cut(s)	245, 274, 427, 636, 1171, 1284
Hpy188III	TCNNGA	6 cut(s)	286, 653, 665, 1227, 1331, 1369
Hpy8I	GTNNAC	2 cut(s)	959, 1064
HpyAV	CCTTC	4 cut(s)	87, 748, 1122, 1204
HpyCH4III	ACNGT	2 cut(s)	283, 1104
HpyCH4IV	ACGT	2 cut(s)	475, 729
HpyCH4V	TGCA	9 cut(s)	4, 13, 208, 420, 515, 714, 1125, 1254, 1360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 866, 1357
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	2 cut(s)	475, 729
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	5 cut(s)	211, 240, 387, 595, 733
LguI	GCTCTTC	1 cut(s)	1063
Lsp1109I	GCAGC	2 cut(s)	908, 1106
LweI	GCATC	1 cut(s)	1324
MaeI	CTAG	2 cut(s)	845, 1227
MaeII	ACGT	2 cut(s)	475, 729
MaeIII	GTNAC	2 cut(s)	471, 1145
MalI	GATC	5 cut(s)	213, 242, 389, 597, 735
MboI	GATC	5 cut(s)	211, 240, 387, 595, 733
MboII	GAAGA	6 cut(s)	36, 571, 940, 1080, 1232, 1295
MfeI	CAATTG	1 cut(s)	461
MflI	RGATCY	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	116
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	6 cut(s)	92, 196, 631, 947, 1091, 1359
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	7 cut(s)	58, 162, 201, 230, 751, 1209, 1213
Mox20I	TGGCCA	1 cut(s)	116
MroXI	GAANNNNTTC	3 cut(s)	531, 1161, 1236
MscI	TGGCCA	1 cut(s)	116
MseI	TTAA	6 cut(s)	203, 509, 549, 723, 768, 1415
Msp20I	TGGCCA	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	950
MunI	CAATTG	1 cut(s)	461
Mva1269I	GAATGC	2 cut(s)	480, 1254
MvaI	CCWGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	3 cut(s)	10, 866, 1357
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	211, 240, 387, 595, 733
NlaIV	GGNNCC	1 cut(s)	434
NmeAIII	GCCGAG	3 cut(s)	274, 317, 322
NmuCI	GTSAC	1 cut(s)	1145
NspI	RCATGY	2 cut(s)	345, 1225
NspV	TTCGAA	1 cut(s)	535
PagI	TCATGA	1 cut(s)	652
PciI	ACATGT	1 cut(s)	1221
PciSI	GCTCTTC	1 cut(s)	1063
PctI	GAATGC	2 cut(s)	480, 1254
PdmI	GAANNNNTTC	3 cut(s)	531, 1161, 1236
PfeI	GAWTC	3 cut(s)	349, 815, 1327
PflMI	CCANNNNNTGG	2 cut(s)	503, 1361
PkrI	GCNGC	2 cut(s)	923, 1096
PleI	GAGTC	6 cut(s)	92, 195, 631, 946, 1090, 1359
PpsI	GAGTC	6 cut(s)	92, 195, 631, 946, 1090, 1359
Ppu21I	YACGTR	1 cut(s)	476
PscI	ACATGT	1 cut(s)	1221
PshBI	ATTAAT	1 cut(s)	1415
PsiI	TTATAA	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	948
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	1 cut(s)	434
PspPI	GGNCC	2 cut(s)	433, 1317
PstNI	CAGNNNCTG	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	387
RsaI	GTAC	2 cut(s)	323, 684
RsaNI	GTAC	2 cut(s)	322, 683
SapI	GCTCTTC	1 cut(s)	1063
SaqAI	TTAA	6 cut(s)	203, 509, 549, 723, 768, 1415
SatI	GCNGC	2 cut(s)	922, 1095
Sau3AI	GATC	5 cut(s)	211, 240, 387, 595, 733
Sau96I	GGNCC	2 cut(s)	433, 1317
SchI	GAGTC	6 cut(s)	92, 196, 631, 947, 1091, 1359
ScrFI	CCNGG	1 cut(s)	950
SfaNI	GCATC	1 cut(s)	1324
SfcI	CTRYAG	1 cut(s)	1293
SfuI	TTCGAA	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SspI	AATATT	1 cut(s)	32
SspMI	CTAG	2 cut(s)	845, 1227
StyD4I	CCNGG	1 cut(s)	948
TaaI	ACNGT	2 cut(s)	283, 1104
TaiI	ACGT	2 cut(s)	478, 732
TaqI	TCGA	1 cut(s)	535
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	3 cut(s)	349, 815, 1327
Tru1I	TTAA	6 cut(s)	203, 509, 549, 723, 768, 1415
Tru9I	TTAA	6 cut(s)	203, 509, 549, 723, 768, 1415
TscAI	CASTG	5 cut(s)	124, 286, 422, 756, 1362
TseFI	GTSAC	1 cut(s)	1145
TseI	GCWGC	2 cut(s)	921, 1094
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	5 cut(s)	36, 423, 579, 641, 855
TspRI	CASTG	5 cut(s)	124, 286, 422, 756, 1362
Van91I	CCANNNNNTGG	2 cut(s)	503, 1361
VspI	ATTAAT	1 cut(s)	1415
XapI	RAATTY	1 cut(s)	677
XbaI	TCTAGA	1 cut(s)	1226
XceI	RCATGY	2 cut(s)	345, 1225
XmnI	GAANNNNTTC	3 cut(s)	531, 1161, 1236
XspI	CTAG	2 cut(s)	845, 1227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.