Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8322353.1

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 951

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8322353.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ataacctcagtatttcttcatggttgtcatcttctggccgtttcgccttcggtttctacccacaaggtaacggctttgcggttggtatacggcttcttaatccaccaaacaacacagtagtgtggaccgcaaatcgagatgacccccctgtctcctcaaactctacactgaaacttacaggagacggtctcttgcttcggtcagagggaggccaagaaatacctattactaatagctcaaatttactagaaactagtgcgatatcaaatgcatcaaccgccgctgcagctatgcttgattccggaaaccttgtgctgtatgatgagactttttttgttatatgggagagctttgatttcccaactgatacaatactgggaggtcaagatttgctggcgtccatgggtctgatatctagtgcatctgttgcagaccactccagcgggcgattttccctggagatgcaggatgatggaaaccttgtggcctacccgccaaacagttcttctccttatttggctactatgaccttcggtagttaccaacttagtctcaacctatcaggctttctcgttttgagtagccaatccagtggtctgactactcaggtcttggcaaacggctcgtaccatcacccacaagacaataaaaccacaatctaccgagcaacacttgatgtcgatgggattttcagattgtacttgcataactttctgatgtccggtagtccagagggagctgtaaaggctatttggtcagctttgcaagatccatgcgacgtcaaaggcatttgtggcttcaacagttattgtgaagtagtcatgcaaaagaaagcagctgaagttcactgcaaatgttaccctggatttgtttacaacaacgccagtcagatgtctctggggtgctatcataatttcactgtaggaggctgcaccggaaatgaagagccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

316

Amino Acids

33.87

Weight (kDa)

4.67

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
AatII	GACGTC	1 cut(s)	782
AccI	GTMKAC	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	301
AciI	CCGC	6 cut(s)	79, 128, 278, 281, 443, 493
AclWI	GGATC	1 cut(s)	763
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	860
AcyI	GRCGYC	2 cut(s)	397, 779
AfaI	GTAC	2 cut(s)	628, 700
AgsI	TTSAA	1 cut(s)	801
AhlI	ACTAGT	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	455, 861
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AleI	CACNNNNGTG	1 cut(s)	118
AluBI	AGCT	6 cut(s)	236, 289, 350, 739, 760, 838
AluI	AGCT	6 cut(s)	236, 289, 350, 739, 760, 838
Alw26I	GTCTC	6 cut(s)	156, 176, 193, 319, 556, 899
AlwI	GGATC	1 cut(s)	763
Aor13HI	TCCGGA	1 cut(s)	301
AoxI	GGCC	3 cut(s)	36, 210, 485
ApeKI	GCWGC	4 cut(s)	283, 286, 835, 929
ApoI	RAATTY	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	125
BbvI	GCAGC	4 cut(s)	270, 298, 847, 916
BccI	CCATC	3 cut(s)	466, 638, 676
BceAI	ACGGC	4 cut(s)	23, 87, 106, 636
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	2 cut(s)	457, 863
BcoDI	GTCTC	6 cut(s)	156, 176, 193, 319, 556, 899
BcuI	ACTAGT	1 cut(s)	253
BfaI	CTAG	3 cut(s)	247, 254, 416
BfmI	CTRYAG	2 cut(s)	284, 920
BisI	GCNGC	5 cut(s)	281, 284, 287, 836, 930
BlsI	GCNGC	5 cut(s)	282, 285, 288, 837, 931
Bme1390I	CCNGG	2 cut(s)	457, 863
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	457, 863
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	280, 430, 452
BmuI	ACTGGG	1 cut(s)	385
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	2 cut(s)	423, 478
BsaHI	GRCGYC	2 cut(s)	397, 779
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	3 cut(s)	401, 455, 861
BsaWI	WCCGGW	3 cut(s)	301, 721, 934
Bse1I	ACTGG	3 cut(s)	380, 590, 884
BseAI	TCCGGA	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	457, 863
BseDI	CCNNGG	3 cut(s)	401, 455, 861
BseGI	GGATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	21, 619
BseNI	ACTGG	3 cut(s)	380, 590, 884
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	4 cut(s)	270, 298, 847, 916
BsgI	GTGCAG	1 cut(s)	915
BshFI	GGCC	3 cut(s)	38, 212, 487
BsiSI	CCGG	3 cut(s)	302, 722, 935
BsmAI	GTCTC	6 cut(s)	156, 176, 193, 319, 556, 899
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	38, 212, 487
Bso31I	GGTCTC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	768
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	6 cut(s)	79, 128, 278, 281, 443, 493
BspANI	GGCC	3 cut(s)	38, 212, 487
BspCNI	CTCAG	2 cut(s)	20, 618
BspEI	TCCGGA	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	288
BspPI	GGATC	1 cut(s)	763
BspQI	GCTCTTC	1 cut(s)	938
BspTNI	GGTCTC	1 cut(s)	193
BsrI	ACTGG	3 cut(s)	380, 590, 884
BssECI	CCNNGG	3 cut(s)	401, 455, 861
BssMI	GATC	1 cut(s)	768
BssNAI	GTATAC	1 cut(s)	88
BssNI	GRCGYC	2 cut(s)	397, 779
BssT1I	CCWWGG	1 cut(s)	401
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	457, 863
Bst4CI	ACNGT	5 cut(s)	117, 187, 502, 805, 921
Bst6I	CTCTTC	1 cut(s)	938
BstACI	GRCGYC	2 cut(s)	397, 779
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstC8I	GCNNGC	2 cut(s)	395, 445
BstDEI	CTNAG	3 cut(s)	7, 547, 605
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	1 cut(s)	771
BstMAI	GTCTC	6 cut(s)	156, 176, 193, 319, 556, 899
BstMBI	GATC	1 cut(s)	768
BstMWI	GCNNNNNNNGC	5 cut(s)	277, 286, 427, 745, 794
BstNI	CCWGG	2 cut(s)	457, 863
BstSCI	CCNGG	2 cut(s)	455, 861
BstSFI	CTRYAG	2 cut(s)	284, 920
BstV1I	GCAGC	4 cut(s)	270, 298, 847, 916
BstX2I	RGATCY	1 cut(s)	768
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	768
BstZ17I	GTATAC	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	38, 212, 487
BtgI	CCRYGG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	474
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	4 cut(s)	166, 597, 846, 917
Cac8I	GCNNGC	2 cut(s)	395, 445
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	627, 699
CviAII	CATG	4 cut(s)	20, 402, 773, 822
CviQI	GTAC	2 cut(s)	627, 699
DdeI	CTNAG	3 cut(s)	7, 547, 605
DpnI	GATC	1 cut(s)	770
DpnII	GATC	1 cut(s)	768
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	938
EarI	CTCTTC	1 cut(s)	938
Eco130I	CCWWGG	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	193
Eco32I	GATATC	2 cut(s)	263, 413
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	455, 861
EcoRV	GATATC	2 cut(s)	263, 413
EcoT14I	CCWWGG	1 cut(s)	401
EcoT22I	ATGCAT	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	4 cut(s)	23, 405, 776, 825
FatI	CATG	4 cut(s)	19, 401, 772, 821
FauI	CCCGC	2 cut(s)	436, 500
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	281, 284, 287, 836, 930
FokI	GGATG	1 cut(s)	481
Fsp4HI	GCNGC	5 cut(s)	281, 284, 287, 836, 930
FspBI	CTAG	3 cut(s)	247, 254, 416
GluI	GCNGC	5 cut(s)	281, 284, 287, 836, 930
GsuI	CTGGAG	2 cut(s)	423, 478
HaeIII	GGCC	3 cut(s)	38, 212, 487
HapII	CCGG	3 cut(s)	302, 722, 935
HgaI	GACGC	1 cut(s)	386
Hin1I	GRCGYC	2 cut(s)	397, 779
Hin1II	CATG	4 cut(s)	23, 405, 776, 825
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	3 cut(s)	302, 722, 935
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	4 cut(s)	88, 125, 846, 873
Hpy188I	TCNGA	6 cut(s)	204, 410, 599, 694, 716, 890
Hpy188III	TCNNGA	4 cut(s)	136, 302, 385, 730
Hpy8I	GTNNAC	4 cut(s)	88, 125, 846, 873
Hpy99I	CGWCG	1 cut(s)	781
HpyAV	CCTTC	2 cut(s)	57, 540
HpyCH4III	ACNGT	5 cut(s)	117, 187, 502, 805, 921
HpyCH4IV	ACGT	1 cut(s)	779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	277, 286, 427, 745, 794
HpyF3I	CTNAG	3 cut(s)	7, 547, 605
HpySE526I	ACGT	1 cut(s)	779
Hsp92I	GRCGYC	2 cut(s)	397, 779
Hsp92II	CATG	4 cut(s)	23, 405, 776, 825
Kpn2I	TCCGGA	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	768
LguI	GCTCTTC	1 cut(s)	938
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	4 cut(s)	270, 298, 847, 916
LweI	GCATC	3 cut(s)	280, 430, 452
MaeI	CTAG	3 cut(s)	247, 254, 416
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	3 cut(s)	67, 538, 856
MalI	GATC	1 cut(s)	770
MboI	GATC	1 cut(s)	768
MboII	GAAGA	3 cut(s)	8, 23, 497
MflI	RGATCY	1 cut(s)	768
MluCI	AATT	2 cut(s)	240, 912
MnlI	CCTC	7 cut(s)	16, 165, 198, 202, 373, 726, 919
Mph1103I	ATGCAT	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	301
MseI	TTAA	1 cut(s)	98
MslI	CAYNNNNRTG	1 cut(s)	118
MspA1I	CMGCKG	3 cut(s)	283, 443, 838
MspI	CCGG	3 cut(s)	302, 722, 935
MspR9I	CCNGG	2 cut(s)	457, 863
MvaI	CCWGG	2 cut(s)	457, 863
MwoI	GCNNNNNNNGC	5 cut(s)	277, 286, 427, 745, 794
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	1 cut(s)	768
NlaIII	CATG	4 cut(s)	23, 405, 776, 825
NsiI	ATGCAT	1 cut(s)	273
OliI	CACNNNNGTG	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	938
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	5 cut(s)	282, 285, 288, 837, 931
Psp6I	CCWGG	2 cut(s)	455, 861
PspGI	CCWGG	2 cut(s)	455, 861
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	838
RsaI	GTAC	2 cut(s)	628, 700
RsaNI	GTAC	2 cut(s)	627, 699
RseI	CAYNNNNRTG	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	938
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	5 cut(s)	281, 284, 287, 836, 930
Sau3AI	GATC	1 cut(s)	768
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	457, 863
SfaNI	GCATC	3 cut(s)	280, 430, 452
SfcI	CTRYAG	2 cut(s)	284, 920
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	118
SpeI	ACTAGT	1 cut(s)	253
Sse9I	AATT	2 cut(s)	240, 912
SsiI	CCGC	6 cut(s)	79, 128, 278, 281, 443, 493
SspMI	CTAG	3 cut(s)	247, 254, 416
StyD4I	CCNGG	2 cut(s)	455, 861
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	5 cut(s)	117, 187, 502, 805, 921
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	2 cut(s)	135, 680
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	2 cut(s)	240, 912
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	4 cut(s)	173, 597, 853, 924
TseI	GCWGC	4 cut(s)	283, 286, 835, 929
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	4 cut(s)	173, 597, 853, 924
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	3 cut(s)	247, 254, 416
ZraI	GACGTC	1 cut(s)	780
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.