Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004399.1

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1892 .. 2419

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtccatgggtttggtatctagtgcatctgttgcagaccactccagcgggcgattttccctgaagatgcaggatgatggaaaccttgtagcctaccagccaaacagttcttctgcttattgggctactatgacctatagtagtggttaccaacttagtcacaacctatcagactttctcgttttgaatagtggtctgagtactcaagtcttggcaaacggctcgttccatcacccacaagataatcaaaccacaatctaccgagcaacacttgatgtcgatgggaatttcatattgtacttgcatgactttctgatgtccgctagttcagagcgagctgtaatgcctatttggtcagctttgcaacatccatgcgacgtccatggcatttgtggcttcaacagttattgtgtagttatgcaaaagaaagcagctgaagttgagtgcaaatgttaccctggatttgttcactacaatgtaagactgaacgagcaaaaccaaatccatgatcaattcacaaatacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

175

Amino Acids

19.47

Weight (kDa)

5.75

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	381
AciI	CCGC	2 cut(s)	48, 321
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	2 cut(s)	83, 456
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	202, 299
AgsI	TTSAA	2 cut(s)	187, 400
AjnI	CCWGG	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	94, 126
AluBI	AGCT	3 cut(s)	338, 359, 434
AluI	AGCT	3 cut(s)	338, 359, 434
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	3 cut(s)	71, 237, 275
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	508
BfaI	CTAG	2 cut(s)	21, 324
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	35, 57
BpmI	CTGGAG	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	6, 382, 457
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	6, 382, 457
BseGI	GGATG	2 cut(s)	79, 367
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	508
Bsp19I	CCATGG	2 cut(s)	6, 382
BspACI	CCGC	2 cut(s)	48, 321
BspCNI	CTCAG	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	6, 382, 457
BssMI	GATC	1 cut(s)	508
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	2 cut(s)	6, 382
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	107, 404
BstACI	GRCGYC	1 cut(s)	378
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	50, 336
BstDEI	CTNAG	2 cut(s)	155, 197
BstDSI	CCRYGG	2 cut(s)	6, 382
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	79, 367
BstKTI	GATC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	508
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 122, 393
BstNI	CCWGG	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	443
BstXI	CCANNNNNNTGG	1 cut(s)	13
BtgI	CCRYGG	2 cut(s)	6, 382
BtsCI	GGATG	2 cut(s)	79, 367
Cac8I	GCNNGC	2 cut(s)	50, 336
Csp6I	GTAC	2 cut(s)	201, 298
CviAII	CATG	5 cut(s)	7, 305, 372, 383, 506
CviJI	RGCY	8 cut(s)	92, 100, 125, 222, 338, 359, 396, 434
CviKI_1	RGCY	8 cut(s)	92, 100, 125, 222, 338, 359, 396, 434
CviQI	GTAC	2 cut(s)	201, 298
DdeI	CTNAG	2 cut(s)	155, 197
DpnI	GATC	1 cut(s)	510
DpnII	GATC	1 cut(s)	508
Eco130I	CCWWGG	2 cut(s)	6, 382
Eco57I	CTGAAG	2 cut(s)	83, 456
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	2 cut(s)	6, 382
ErhI	CCWWGG	2 cut(s)	6, 382
FaeI	CATG	5 cut(s)	10, 308, 375, 386, 509
FatI	CATG	5 cut(s)	6, 304, 371, 382, 505
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	2 cut(s)	86, 354
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	21, 324
GluI	GCNGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	5 cut(s)	10, 308, 375, 386, 509
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	4 cut(s)	172, 198, 315, 331
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	107, 404
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	7 cut(s)	26, 35, 70, 304, 364, 421, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 122, 393
HpyF3I	CTNAG	2 cut(s)	155, 197
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	10, 308, 375, 386, 509
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	508
LpnPI	CCDG	6 cut(s)	56, 58, 74, 110, 444, 471
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	35, 57
MaeI	CTAG	2 cut(s)	21, 324
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	146, 158, 452
MalI	GATC	1 cut(s)	510
MboI	GATC	1 cut(s)	508
MboII	GAAGA	2 cut(s)	76, 102
MluCI	AATT	2 cut(s)	286, 512
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	2 cut(s)	48, 434
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	3 cut(s)	32, 122, 393
NcoI	CCATGG	2 cut(s)	6, 382
NdeII	GATC	1 cut(s)	508
NlaIII	CATG	5 cut(s)	10, 308, 375, 386, 509
NmuCI	GTSAC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	202, 299
RsaNI	GTAC	2 cut(s)	201, 298
RseI	CAYNNNNRTG	1 cut(s)	474
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	508
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	459
SetI	ASST	7 cut(s)	87, 137, 168, 340, 361, 381, 436
SfaNI	GCATC	2 cut(s)	35, 57
SfcI	CTRYAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	286, 512
SsiI	CCGC	2 cut(s)	48, 321
SspMI	CTAG	2 cut(s)	21, 324
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	6, 382
TaaI	ACNGT	2 cut(s)	107, 404
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	279
TasI	AATT	2 cut(s)	286, 512
TatI	WGTACW	2 cut(s)	200, 297
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	280
XapI	RAATTY	1 cut(s)	286
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XspI	CTAG	2 cut(s)	21, 324
ZraI	GACGTC	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.