Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Reverse (-)

59446524 .. 59448659

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2136 bp

ATGCCCAATGTAAACGCGCAAAGAAACCACTCCAAATCCAATTTAATCAGCCCGGGCTCCTCTCTATCCCCCCATGGCTATAACCTCAGTATTTCTTCATGGTTGTCATCTTCTGGCCGTTTCGCCTTCGGTTTCTACCCACAAGGTAACGGCTTTGCTGTTGGTATACGGCTTCTTAATCCACCAAACAACACAGTAGTGTGGACCGCAAATCGAGATGACCCCCCTGTCTCCTCAAACTCTACACTGAAACTTACAGGAGACGGTCTCTTGCTTCGGTCAGAGGGAGGCCAAGAAATACTTATTACTAATGGCTCAAATTTACTAGAAACTAGTGCGATATCAAATGCATCAACTGCCGCTGCAGCTATGCTTGATTCCGGAAACTTTGTGCTGTATAATGAGACTTTTTTTGTTATATGGGAGAGCTTTGATTTCCCAACTGATACAATACTGGGAGGTCAAGATTTGCTGGCGTCCATGGGTCTGATATCTAGTGCATCTGTTGCAGACCACTCCAGTGGGCGATTTTCCCTGGAGATGCAGGATGATGGAAACCTTGTGGCCTACCCGCCAAACAGTTCTTCTCCTTATTTGGCTACTATGACCTTCGGTAGTTACCAACTTAGTCTCAACCTATCAGGCTTTCTCGTTTTGAGTAGCCAATCCAGTGGTCTGACTACTCAGGTCTTGGCAAACGGCTCGTACCATCACCCACAAGACAATAAAACCACAATCTACCGAGCAACACTTGATGTCGATGGGATTTTCAGATTGTACTTGCATAACTTTCTGATGTCCGGTAGTCCAGAGGGAGCTGTAACGGCTATTTGGTCAGCTTTGCAAGATCCATGCGACGTCAAAGGCATTTGTGGCTTCAACAGTTATTGTGAAGTAGTCATGCAAAAGAAAGCAGCTGAAGTTCACTGCAAATGTTACCCTGGATTTGTTTACAACAACGCCAGTCAGATGTCTCTGGGGTGCTATCATAATTTCACTGTAGGAGGCTGCACCGGAAATGAAGAGCCACGGCTGCGGTACAAGGTAGCGGCCTTGGACAATACAGCGTGGAGTAATCATCCTTATTCAGTGACACCTATTCAAAACAAGGAAGATTGCGGTGACTCTTGCCTGGGAGACTGCAATTGTTGGGCTGTGCTATATACAGATGCTGATTGCAGAAAATACAAGCTTCCACTTTTATATGGCAAAACAACTTCAAGTATATCCTCTAAAGGTTTCATCAAAGTGCTTCTACCGAGAAACATGGACAGTATGCCAAATAATTTTCCCTACCGTCCGACGGTAACTGAAAGCAAGAATAAGAGTCTAATTCTAATTCTTGCTATCAGTCTGGGTTCCATTGCATTCTTGTGTTCTGTCTTTGCCATCTTGAGTTTCGCCATATACATGCACCGAGTTCATAGGTACAAGAAGCTGTTGAAACATTCGAGTTTGGCATTAGCTGATCAAGAGTACTTCACTTTGCAATCATTTTCTTACGCTGAGCTAGAAAGAGCAACAGATGGCTTCAAGGAAGAAATAGGAAGGGGTACTTTCGGAGCTGTTTATAAAGGAACCCTGTCCGTGGGCAGCTCTAACAAAACTGTTGCTGTTAAAAGACTGGAGAAAGTGGTTGATGAAGGAGTAAGGGAATTTATAGCAGAAATGACCACGATTGGACGAACTCACCACAGAAACTTAATTCAGTTGCTTGGTTTCTGTACTGAGGGTTCTCGGAAGCTTCTTGTTTATGAATACATGAGCAACGGCTCACTTGCGGATCTTATCTTTAAGGCTAAAAGTGTTCATTCATCTTGGAAAGAGAGGGTAAGACTTGTATTTGATGTGGCTAAAGGGGTCCTCTATTTACATGATGAGTGCAGTGTCCATATCATTCACTCCAATTTGAAACCCCAAAACGTACTCTTGGATCATACTTGGACGGCTAAGATATCTGATTTCGGTTTGGCCAGGCTGGTGCCAAATGAAACAAAAATCAACTCTACTGGAGGAGAAGGAGGAGAAGCGGGAACAGTCGAACAGCTGAGAAGAGGTTACTTGGCGCCTGAATGGCAGAAGAATGCTCTCATATCTGTAAAAGCTGATATCTACAGTTTTGGTATTGTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

711

Amino Acids

77.92

Weight (kDa)

7.01

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	65 - 158	3.7e-16	D-mannose binding lectin
PK_Tyr_Ser-Thr	PF07714	511 - 711	1.7e-40	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	512 - 711	1.6e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1572
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	861
AccB1I	GGYRCC	2 cut(s)	1981, 2065
AccI	GTMKAC	1 cut(s)	166
AccII	CGCG	1 cut(s)	17
AccIII	TCCGGA	1 cut(s)	380
AciI	CCGC	8 cut(s)	207, 360, 572, 1036, 1049, 1119, 1781, 2030
AclWI	GGATC	3 cut(s)	842, 1791, 1941
AcoI	YGGCCR	2 cut(s)	115, 1971
AcsI	RAATTY	2 cut(s)	319, 1655
AcuI	CTGAAG	1 cut(s)	939
AcyI	GRCGYC	3 cut(s)	476, 858, 2066
AfaI	GTAC	8 cut(s)	707, 779, 1040, 1430, 1478, 1555, 1726, 1926
AfiI	CCNNNNNNNGG	2 cut(s)	1303, 1588
AgsI	TTSAA	6 cut(s)	880, 1103, 1221, 1444, 1534, 1912
AhlI	ACTAGT	1 cut(s)	332
AjnI	CCWGG	4 cut(s)	534, 940, 1131, 1973
AjuI	GAANNNNNNNTTGG	2 cut(s)	568, 600
AleI	CACNNNNGTG	2 cut(s)	197, 519
Alw26I	GTCTC	7 cut(s)	235, 255, 272, 398, 635, 978, 1131
AlwI	GGATC	3 cut(s)	842, 1791, 1941
AlwNI	CAGNNNCTG	1 cut(s)	1172
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	380
AoxI	GGCC	5 cut(s)	115, 289, 564, 1050, 1971
ApeKI	GCWGC	6 cut(s)	362, 365, 914, 1008, 1033, 1593
ApoI	RAATTY	2 cut(s)	319, 1655
AspLEI	GCGC	2 cut(s)	19, 2068
AspS9I	GGNCC	2 cut(s)	204, 1861
AsuC2I	CCSGG	2 cut(s)	53, 54
AsuHPI	GGTGA	3 cut(s)	704, 1133, 1682
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	204, 1861
BalI	TGGCCA	1 cut(s)	1973
BanI	GGYRCC	2 cut(s)	1981, 2065
BanII	GRGCYC	1 cut(s)	59
BbvI	GCAGC	6 cut(s)	349, 377, 926, 995, 1020, 1605
BccI	CCATC	5 cut(s)	545, 717, 755, 1397, 1520
BceAI	ACGGC	8 cut(s)	102, 166, 185, 715, 840, 1046, 1786, 1962
BcgI	CGANNNNNNTGC	2 cut(s)	684, 718
BciT130I	CCWGG	4 cut(s)	536, 942, 1133, 1975
BclI	TGATCA	1 cut(s)	1468
BcnI	CCSGG	2 cut(s)	53, 54
BcoDI	GTCTC	7 cut(s)	235, 255, 272, 398, 635, 978, 1131
BcuI	ACTAGT	1 cut(s)	332
BfaI	CTAG	4 cut(s)	326, 333, 495, 1511
BfmI	CTRYAG	3 cut(s)	363, 999, 2113
BfoI	RGCGCY	1 cut(s)	2069
BglI	GCCNNNNNGGC	1 cut(s)	2074
BisI	GCNGC	8 cut(s)	360, 363, 366, 915, 1009, 1034, 1050, 1594
BlpI	GCTNAGC	1 cut(s)	1506
BlsI	GCNGC	8 cut(s)	361, 364, 367, 916, 1010, 1035, 1051, 1595
BmcAI	AGTACT	1 cut(s)	1478
Bme1390I	CCNGG	6 cut(s)	53, 54, 536, 942, 1133, 1975
Bme18I	GGWCC	2 cut(s)	204, 1861
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	204, 1861
BmiI	GGNNCC	6 cut(s)	58, 1360, 1579, 1862, 1983, 2067
BmrFI	CCNGG	6 cut(s)	53, 54, 536, 942, 1133, 1975
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	4 cut(s)	359, 509, 531, 1159
BmuI	ACTGGG	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
BpmI	CTGGAG	4 cut(s)	502, 557, 1646, 2031
Bpu1102I	GCTNAGC	1 cut(s)	1506
BpuEI	CTTGAG	1 cut(s)	1414
BpuMI	CCSGG	2 cut(s)	53, 54
BsaHI	GRCGYC	3 cut(s)	476, 858, 2066
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	9 cut(s)	52, 73, 480, 534, 940, 1028, 1053, 1132, 1587
BsaWI	WCCGGW	3 cut(s)	380, 800, 1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	1303, 1588
Bse1I	ACTGG	6 cut(s)	459, 519, 669, 963, 1629, 2014
Bse3DI	GCAATG	1 cut(s)	1362
BseAI	TCCGGA	1 cut(s)	380
BseBI	CCWGG	4 cut(s)	536, 942, 1133, 1975
BseDI	CCNNGG	9 cut(s)	52, 73, 480, 534, 940, 1028, 1053, 1132, 1587
BseGI	GGATG	2 cut(s)	553, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	1303, 1588
BseMI	GCAATG	1 cut(s)	1362
BseMII	CTCAG	5 cut(s)	100, 698, 1497, 1719, 2039
BseNI	ACTGG	6 cut(s)	459, 519, 669, 963, 1629, 2014
BseRI	GAGGAG	4 cut(s)	49, 223, 2028, 2037
BseXI	GCAGC	6 cut(s)	349, 377, 926, 995, 1020, 1605
BsgI	GTGCAG	2 cut(s)	994, 1903
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	5 cut(s)	117, 291, 566, 1052, 1973
BshNI	GGYRCC	2 cut(s)	1981, 2065
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	4 cut(s)	53, 381, 801, 1014
BslI	CCNNNNNNNGG	2 cut(s)	1303, 1588
BsmAI	GTCTC	7 cut(s)	235, 255, 272, 398, 635, 978, 1131
BsmBI	CGTCTC	1 cut(s)	255
BsmI	GAATGC	2 cut(s)	1367, 2089
BsnI	GGCC	5 cut(s)	117, 291, 566, 1052, 1973
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	380
Bsp143I	GATC	4 cut(s)	847, 1468, 1783, 1933
Bsp1720I	GCTNAGC	1 cut(s)	1506
Bsp19I	CCATGG	2 cut(s)	73, 480
BspACI	CCGC	8 cut(s)	207, 360, 572, 1036, 1049, 1119, 1781, 2030
BspANI	GGCC	5 cut(s)	117, 291, 566, 1052, 1973
BspCNI	CTCAG	5 cut(s)	99, 697, 1498, 1720, 2040
BspEI	TCCGGA	1 cut(s)	380
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	6 cut(s)	58, 1360, 1579, 1862, 1983, 2067
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	3 cut(s)	842, 1791, 1941
BspQI	GCTCTTC	1 cut(s)	1017
BspT107I	GGYRCC	2 cut(s)	1981, 2065
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	1362
BsrI	ACTGG	6 cut(s)	459, 519, 669, 963, 1629, 2014
BssECI	CCNNGG	9 cut(s)	52, 73, 480, 534, 940, 1028, 1053, 1132, 1587
BssMI	GATC	4 cut(s)	847, 1468, 1783, 1933
BssNAI	GTATAC	1 cut(s)	167
BssNI	GRCGYC	3 cut(s)	476, 858, 2066
BssT1I	CCWWGG	3 cut(s)	73, 480, 1053
Bst1107I	GTATAC	1 cut(s)	167
Bst2UI	CCWGG	4 cut(s)	536, 942, 1133, 1975
Bst6I	CTCTTC	2 cut(s)	1017, 2047
BstACI	GRCGYC	3 cut(s)	476, 858, 2066
BstAPI	GCANNNNNTGC	2 cut(s)	356, 506
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	7 cut(s)	86, 626, 684, 1506, 1728, 1950, 2048
BstDSI	CCRYGG	4 cut(s)	73, 480, 1028, 1587
BstF5I	GGATG	2 cut(s)	553, 1078
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	2069
BstHHI	GCGC	2 cut(s)	19, 2068
BstKTI	GATC	4 cut(s)	850, 1471, 1786, 1936
BstMAI	GTCTC	7 cut(s)	235, 255, 272, 398, 635, 978, 1131
BstMBI	GATC	4 cut(s)	847, 1468, 1783, 1933
BstMWI	GCNNNNNNNGC	7 cut(s)	356, 365, 506, 824, 873, 1033, 2074
BstNI	CCWGG	4 cut(s)	536, 942, 1133, 1975
BstNSI	RCATGY	1 cut(s)	1414
BstSCI	CCNGG	6 cut(s)	51, 52, 534, 940, 1131, 1973
BstSFI	CTRYAG	3 cut(s)	363, 999, 2113
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	6 cut(s)	349, 377, 926, 995, 1020, 1605
BstX2I	RGATCY	2 cut(s)	847, 1783
BstXI	CCANNNNNNTGG	2 cut(s)	521, 671
BstYI	RGATCY	2 cut(s)	847, 1783
BstZ17I	GTATAC	1 cut(s)	167
BsuRI	GGCC	5 cut(s)	117, 291, 566, 1052, 1973
BtgI	CCRYGG	4 cut(s)	73, 480, 1028, 1587
BtsCI	GGATG	2 cut(s)	553, 1078
BtsI	GCAGTG	2 cut(s)	925, 1891
BtsIMutI	CAGTG	7 cut(s)	245, 526, 676, 925, 996, 1095, 1891
Cac8I	GCNNGC	1 cut(s)	474
CaiI	CAGNNNCTG	1 cut(s)	1172
CfoI	GCGC	2 cut(s)	19, 2068
Cfr13I	GGNCC	2 cut(s)	204, 1861
Cfr9I	CCCGGG	1 cut(s)	52
CseI	GACGC	1 cut(s)	465
Csp6I	GTAC	8 cut(s)	706, 778, 1039, 1429, 1477, 1554, 1725, 1925
CviAII	CATG	9 cut(s)	74, 99, 481, 852, 901, 1267, 1411, 1762, 1874
CviQI	GTAC	8 cut(s)	706, 778, 1039, 1429, 1477, 1554, 1725, 1925
DdeI	CTNAG	7 cut(s)	86, 626, 684, 1506, 1728, 1950, 2048
DinI	GGCGCC	1 cut(s)	2067
DpnI	GATC	4 cut(s)	849, 1470, 1785, 1935
DpnII	GATC	4 cut(s)	847, 1468, 1783, 1933
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	115, 1971
Eam1104I	CTCTTC	2 cut(s)	1017, 2047
EarI	CTCTTC	2 cut(s)	1017, 2047
Eco130I	CCWWGG	3 cut(s)	73, 480, 1053
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	4 cut(s)	342, 492, 1956, 2110
Eco47I	GGWCC	2 cut(s)	204, 1861
Eco57I	CTGAAG	1 cut(s)	939
Eco88I	CYCGRG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	1861
EcoRII	CCWGG	4 cut(s)	534, 940, 1131, 1973
EcoRV	GATATC	4 cut(s)	342, 492, 1956, 2110
EcoT14I	CCWWGG	3 cut(s)	73, 480, 1053
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	59
EgeI	GGCGCC	1 cut(s)	2067
EheI	GGCGCC	1 cut(s)	2067
ErhI	CCWWGG	3 cut(s)	73, 480, 1053
Esp3I	CGTCTC	1 cut(s)	255
FaeI	CATG	9 cut(s)	77, 102, 484, 855, 904, 1270, 1414, 1765, 1877
FalI	AAGNNNNNCTT	4 cut(s)	285, 317, 1540, 1572
FatI	CATG	9 cut(s)	73, 98, 480, 851, 900, 1266, 1410, 1761, 1873
FauI	CCCGC	2 cut(s)	579, 2023
FbaI	TGATCA	1 cut(s)	1468
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	360, 363, 366, 915, 1009, 1034, 1050, 1594
FokI	GGATG	2 cut(s)	560, 1065
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	8 cut(s)	360, 363, 366, 915, 1009, 1034, 1050, 1594
FspBI	CTAG	4 cut(s)	326, 333, 495, 1511
GlaI	GCGC	2 cut(s)	18, 2067
GluI	GCNGC	8 cut(s)	360, 363, 366, 915, 1009, 1034, 1050, 1594
GsuI	CTGGAG	4 cut(s)	502, 557, 1646, 2031
HaeII	RGCGCY	1 cut(s)	2069
HaeIII	GGCC	5 cut(s)	117, 291, 566, 1052, 1973
HapII	CCGG	4 cut(s)	53, 381, 801, 1014
HgaI	GACGC	1 cut(s)	465
HhaI	GCGC	2 cut(s)	19, 2068
Hin1I	GRCGYC	3 cut(s)	476, 858, 2066
Hin1II	CATG	9 cut(s)	77, 102, 484, 855, 904, 1270, 1414, 1765, 1877
Hin6I	GCGC	2 cut(s)	17, 2066
HinP1I	GCGC	2 cut(s)	17, 2066
HindIII	AAGCTT	2 cut(s)	1190, 1742
HinfI	GANTC	3 cut(s)	377, 1124, 1327
HpaII	CCGG	4 cut(s)	53, 381, 801, 1014
HphI	GGTGA	3 cut(s)	704, 1133, 1682
Hpy166II	GTNNAC	5 cut(s)	13, 167, 204, 925, 952
Hpy188III	TCNNGA	6 cut(s)	215, 381, 464, 809, 1393, 1472
Hpy8I	GTNNAC	5 cut(s)	13, 167, 204, 925, 952
Hpy99I	CGWCG	2 cut(s)	860, 1306
HpyAV	CCTTC	5 cut(s)	136, 619, 1542, 1637, 2012
HpyCH4IV	ACGT	2 cut(s)	858, 1923
HpyF10VI	GCNNNNNNNGC	7 cut(s)	356, 365, 506, 824, 873, 1033, 2074
HpyF3I	CTNAG	7 cut(s)	86, 626, 684, 1506, 1728, 1950, 2048
HpySE526I	ACGT	2 cut(s)	858, 1923
Hsp92I	GRCGYC	3 cut(s)	476, 858, 2066
Hsp92II	CATG	9 cut(s)	77, 102, 484, 855, 904, 1270, 1414, 1765, 1877
HspAI	GCGC	2 cut(s)	17, 2066
KasI	GGCGCC	1 cut(s)	2065
Kpn2I	TCCGGA	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	1468
Kzo9I	GATC	4 cut(s)	847, 1468, 1783, 1933
LguI	GCTCTTC	1 cut(s)	1017
LmnI	GCTCC	3 cut(s)	62, 815, 1562
Lsp1109I	GCAGC	6 cut(s)	349, 377, 926, 995, 1020, 1605
LweI	GCATC	4 cut(s)	359, 509, 531, 1159
MaeI	CTAG	4 cut(s)	326, 333, 495, 1511
MaeII	ACGT	2 cut(s)	858, 1923
MaeIII	GTNAC	8 cut(s)	146, 617, 820, 935, 1090, 1121, 1306, 2057
MalI	GATC	4 cut(s)	849, 1470, 1785, 1935
MboI	GATC	4 cut(s)	847, 1468, 1783, 1933
MboII	GAAGA	8 cut(s)	87, 102, 576, 1034, 1124, 1550, 2064, 2092
MfeI	CAATTG	1 cut(s)	1144
MflI	RGATCY	2 cut(s)	847, 1783
MhlI	GDGCHC	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	1973
MluNI	TGGCCA	1 cut(s)	1973
Mly113I	GGCGCC	1 cut(s)	2066
MlyI	GAGTC	2 cut(s)	1118, 1336
MmeI	TCCRAC	1 cut(s)	1325
Mox20I	TGGCCA	1 cut(s)	1973
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	1973
MseI	TTAA	5 cut(s)	44, 177, 1617, 1703, 1794
MslI	CAYNNNNRTG	5 cut(s)	197, 519, 1247, 1372, 1409
Msp20I	TGGCCA	1 cut(s)	1973
MspA1I	CMGCKG	3 cut(s)	362, 917, 2047
MspI	CCGG	4 cut(s)	53, 381, 801, 1014
MspR9I	CCNGG	6 cut(s)	53, 54, 536, 942, 1133, 1975
MunI	CAATTG	1 cut(s)	1144
Mva1269I	GAATGC	2 cut(s)	1367, 2089
MvaI	CCWGG	4 cut(s)	536, 942, 1133, 1975
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	7 cut(s)	356, 365, 506, 824, 873, 1033, 2074
NarI	GGCGCC	1 cut(s)	2066
NciI	CCSGG	2 cut(s)	53, 54
NcoI	CCATGG	2 cut(s)	73, 480
NdeII	GATC	4 cut(s)	847, 1468, 1783, 1933
NlaIII	CATG	9 cut(s)	77, 102, 484, 855, 904, 1270, 1414, 1765, 1877
NlaIV	GGNNCC	6 cut(s)	58, 1360, 1579, 1862, 1983, 2067
NmuCI	GTSAC	2 cut(s)	1090, 1121
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	1414
OliI	CACNNNNGTG	2 cut(s)	197, 519
PciSI	GCTCTTC	1 cut(s)	1017
PctI	GAATGC	2 cut(s)	1367, 2089
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	8 cut(s)	361, 364, 367, 916, 1010, 1035, 1051, 1595
PleI	GAGTC	2 cut(s)	1118, 1335
PluTI	GGCGCC	1 cut(s)	2069
PpsI	GAGTC	2 cut(s)	1118, 1335
PpuMI	RGGWCCY	1 cut(s)	1861
PsiI	TTATAA	1 cut(s)	1572
Psp5II	RGGWCCY	1 cut(s)	1861
Psp6I	CCWGG	4 cut(s)	534, 940, 1131, 1973
PspGI	CCWGG	4 cut(s)	534, 940, 1131, 1973
PspN4I	GGNNCC	6 cut(s)	58, 1360, 1579, 1862, 1983, 2067
PspPI	GGNCC	2 cut(s)	204, 1861
PspPPI	RGGWCCY	1 cut(s)	1861
PsrI	GAACNNNNNNTAC	2 cut(s)	1717, 1749
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	2 cut(s)	847, 1783
PvuII	CAGCTG	2 cut(s)	917, 2047
RsaI	GTAC	8 cut(s)	707, 779, 1040, 1430, 1478, 1555, 1726, 1926
RsaNI	GTAC	8 cut(s)	706, 778, 1039, 1429, 1477, 1554, 1725, 1925
RseI	CAYNNNNRTG	5 cut(s)	197, 519, 1247, 1372, 1409
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	5 cut(s)	44, 177, 1617, 1703, 1794
SatI	GCNGC	8 cut(s)	360, 363, 366, 915, 1009, 1034, 1050, 1594
Sau3AI	GATC	4 cut(s)	847, 1468, 1783, 1933
Sau96I	GGNCC	2 cut(s)	204, 1861
ScaI	AGTACT	1 cut(s)	1478
SchI	GAGTC	2 cut(s)	1118, 1336
ScrFI	CCNGG	6 cut(s)	53, 54, 536, 942, 1133, 1975
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	4 cut(s)	359, 509, 531, 1159
SfcI	CTRYAG	3 cut(s)	363, 999, 2113
SfoI	GGCGCC	1 cut(s)	2067
SinI	GGWCC	2 cut(s)	204, 1861
SmaI	CCCGGG	1 cut(s)	54
SmiMI	CAYNNNNRTG	5 cut(s)	197, 519, 1247, 1372, 1409
SmlI	CTYRAG	1 cut(s)	1393
SmoI	CTYRAG	1 cut(s)	1393
SpeI	ACTAGT	1 cut(s)	332
SrfI	GCCCGGGC	1 cut(s)	54
SsiI	CCGC	8 cut(s)	207, 360, 572, 1036, 1049, 1119, 1781, 2030
SspDI	GGCGCC	1 cut(s)	2065
SspMI	CTAG	4 cut(s)	326, 333, 495, 1511
StyD4I	CCNGG	6 cut(s)	51, 52, 534, 940, 1131, 1973
StyI	CCWWGG	3 cut(s)	73, 480, 1053
TaiI	ACGT	2 cut(s)	861, 1926
TaqI	TCGA	4 cut(s)	214, 759, 1451, 2040
TaqII	GACCGA	1 cut(s)	267
TatI	WGTACW	3 cut(s)	777, 1476, 1724
TauI	GCSGC	2 cut(s)	362, 1052
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	5 cut(s)	44, 177, 1617, 1703, 1794
Tru9I	TTAA	5 cut(s)	44, 177, 1617, 1703, 1794
TscAI	CASTG	7 cut(s)	252, 526, 676, 932, 1003, 1095, 1891
TseFI	GTSAC	2 cut(s)	1090, 1121
TseI	GCWGC	6 cut(s)	362, 365, 914, 1008, 1033, 1593
Tsp45I	GTSAC	2 cut(s)	1090, 1121
TspDTI	ATGAA	9 cut(s)	87, 1035, 1231, 1412, 1656, 1770, 1799, 1803, 2004
TspGWI	ACGGA	1 cut(s)	1576
TspMI	CCCGGG	1 cut(s)	52
TspRI	CASTG	7 cut(s)	252, 526, 676, 932, 1003, 1095, 1891
VpaK11BI	GGWCC	2 cut(s)	204, 1861
XapI	RAATTY	2 cut(s)	319, 1655
XceI	RCATGY	1 cut(s)	1414
XmaI	CCCGGG	1 cut(s)	52
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	4 cut(s)	326, 333, 495, 1511
ZraI	GACGTC	1 cut(s)	859
ZrmI	AGTACT	1 cut(s)	1478
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.