Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002831.1

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Forward (+)

62879 .. 64989

Gene Structure 2111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002831.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgctggatcaaacaaggaccttcacagggataagagggacaagagggtatttggcaccagaatggcaaaagaacactccaatctcagtgaaggcagatatctacagttttggtatagtgcttcttgaacttgtgtgttgcaggaggaatttggacgtcagtgttagaacagaggagatagttctttctacttggatttataagtgctttgtcagtagagagctacataggcttattgtgggtggcgaagaagtgaataagaagagcttggagaatatggttaaggtgggattatggtgtatacaagatgaaccagctctgcgcgtgccagcactgtggggtgcagtcgtcgggggccttacccttgcttcgctggtagtatctgtggcagtagcactagcagtcagatcggagagactaggactggaagtacggtcgccgggtttcaacaaggttgaaggtttgctccggggagactttgtaatcgctgagattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

166

Amino Acids

18.42

Weight (kDa)

7.65

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AatII	GACGTC	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	1 cut(s)	324
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	128, 448, 458
AluBI	AGCT	3 cut(s)	223, 267, 317
AluI	AGCT	3 cut(s)	223, 267, 317
Alw26I	GTCTC	2 cut(s)	409, 468
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	18, 355
AsuC2I	CCSGG	2 cut(s)	441, 470
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BcnI	CCSGG	2 cut(s)	441, 470
BcoDI	GTCTC	2 cut(s)	409, 468
BfaI	CTAG	2 cut(s)	398, 419
BfmI	CTRYAG	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	441, 470
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	18, 355
BmiI	GGNNCC	2 cut(s)	57, 356
BmrFI	CCNGG	2 cut(s)	441, 470
BpuMI	CCSGG	2 cut(s)	441, 470
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	465, 495
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse1I	ACTGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	99, 480
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	357
BshNI	GGYRCC	1 cut(s)	55
BsiEI	CGRYCG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	440, 469
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	2 cut(s)	409, 468
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	7, 407
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	2 cut(s)	98, 481
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	57, 356
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	469
BssMI	GATC	2 cut(s)	7, 407
BssNAI	GTATAC	1 cut(s)	302
BssNI	GRCGYC	1 cut(s)	156
Bst1107I	GTATAC	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	107, 336, 435
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	326, 330
BstDEI	CTNAG	2 cut(s)	85, 489
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	10, 410
BstMAI	GTCTC	2 cut(s)	409, 468
BstMBI	GATC	2 cut(s)	7, 407
BstMCI	CGRYCG	1 cut(s)	437
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	439, 468
BstSFI	CTRYAG	1 cut(s)	103
BstUI	CGCG	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstZ17I	GTATAC	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	93, 166, 332
Cac8I	GCNNGC	2 cut(s)	326, 330
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	18, 355
Csp6I	GTAC	1 cut(s)	431
CviJI	RGCY	5 cut(s)	223, 232, 267, 317, 357
CviKI_1	RGCY	5 cut(s)	223, 232, 267, 317, 357
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	2 cut(s)	85, 489
DpnI	GATC	2 cut(s)	9, 409
DpnII	GATC	2 cut(s)	7, 407
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	18, 355
EcoRV	GATATC	1 cut(s)	100
FaiI	YATR	6 cut(s)	116, 201, 228, 278, 295, 302
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	301
FspBI	CTAG	2 cut(s)	398, 419
GlaI	GCGC	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	2 cut(s)	440, 469
HhaI	GCGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	440, 469
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	407, 412
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	31, 85, 452
HpyCH4III	ACNGT	3 cut(s)	107, 336, 435
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	141, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	2 cut(s)	85, 489
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	7, 407
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	1 cut(s)	471
LpnPI	CCDG	9 cut(s)	12, 72, 127, 327, 342, 359, 410, 453, 482
MaeI	CTAG	2 cut(s)	398, 419
MaeII	ACGT	1 cut(s)	156
MalI	GATC	2 cut(s)	9, 409
MboI	GATC	2 cut(s)	7, 407
MboII	GAAGA	2 cut(s)	260, 274
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	4 cut(s)	29, 38, 138, 166
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	61
MspI	CCGG	2 cut(s)	440, 469
MspR9I	CCNGG	2 cut(s)	441, 470
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	2 cut(s)	441, 470
NdeII	GATC	2 cut(s)	7, 407
NlaIV	GGNNCC	2 cut(s)	57, 356
PciSI	GCTCTTC	1 cut(s)	257
PpuMI	RGGWCCY	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	18
PspN4I	GGNNCC	2 cut(s)	57, 356
PspPI	GGNCC	2 cut(s)	18, 355
PspPPI	RGGWCCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
RseI	CAYNNNNRTG	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	7, 407
Sau96I	GGNCC	2 cut(s)	18, 355
ScrFI	CCNGG	2 cut(s)	441, 470
SetI	ASST	8 cut(s)	23, 159, 225, 269, 288, 319, 456, 463
SfcI	CTRYAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	61
Sse9I	AATT	1 cut(s)	148
SspMI	CTAG	2 cut(s)	398, 419
StyD4I	CCNGG	2 cut(s)	439, 468
TaaI	ACNGT	3 cut(s)	107, 336, 435
TaiI	ACGT	1 cut(s)	159
TasI	AATT	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	3 cut(s)	93, 166, 339
TspDTI	ATGAA	1 cut(s)	324
TspRI	CASTG	3 cut(s)	93, 166, 339
VpaK11BI	GGWCC	1 cut(s)	18
XapI	RAATTY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	2 cut(s)	398, 419
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.