Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002700.1

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Reverse (-)

167778 .. 168937

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002700.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgccaaacaattttcccgaaccacccataagccggacggtaactgaaagcaagaataatagtctaattcaaattcttgccatcactctgggtaccattgcattcctgtgctctgtccttgccatctcgagtttcaccatatacaagcaccgagttcataggtacgagaagctgttgaaacattcgagtttggcattagctgatcaagagtacttcactttacaatcgttttcttatgctgagctcgaaagagcaacagatggcttcaaggaagagataggaaggggctctaacaaaactgttgctgttaaaagactggagaaaggggttgatgaaggaggttctcggaagcttcttgtttatgaatacatgagcaacggctcacttgcggatcttatctttaaggccaaaactgtgcactcatcttggaaagaaagggtaagacttatattcgatgtggctaaaggggtcctctgtttacatgacgaatgcaatgtccatatcattcattccaatttgaaaccccaaaacgtactcttggatcatacttggacggctaagatatctgatttcggtttaaccaggctggtgccaaatgaaacaaaaatcaactctactggaggaggaggaggagcgggaacagtcgaacaggtgagaagaggttacttggcgcctgaatggcagaaaaatgctctcatatctgtaaaagctgatatctacagttttgatgagataattctttcgagttgggtcagtaaatgctttgctgctggagaattagataagcttgtggaggaagatgaaaatgtagatttgaagaccctagaaagaatggtaaaagtggggttgtggtgcgtccaagatgatccagctttgcgtcctttcatgaagaatgtaatcttgatgttggaagggacaatggacataccagttccaccatgtcccgagcttccctctcttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

321

Amino Acids

35.87

Weight (kDa)

6.27

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	3 cut(s)	92, 589, 670
AccBSI	CCGCTC	1 cut(s)	635
AciI	CCGC	2 cut(s)	389, 635
AclWI	GGATC	3 cut(s)	399, 549, 860
AcsI	RAATTY	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	671
AfaI	GTAC	4 cut(s)	94, 164, 212, 534
AfiI	CCNNNNNNNGG	1 cut(s)	33
AgsI	TTSAA	5 cut(s)	71, 178, 268, 520, 817
AjnI	CCWGG	1 cut(s)	581
AluBI	AGCT	8 cut(s)	172, 200, 244, 352, 710, 787, 872, 949
AluI	AGCT	8 cut(s)	172, 200, 244, 352, 710, 787, 872, 949
Alw21I	GWGCWC	3 cut(s)	113, 246, 420
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	399, 549, 860
Ama87I	CYCGRG	2 cut(s)	127, 944
AoxI	GGCC	1 cut(s)	405
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	767
ApoI	RAATTY	1 cut(s)	72
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
Asp718I	GGTACC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	127, 664
AvaI	CYCGRG	2 cut(s)	127, 944
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	420
BanI	GGYRCC	3 cut(s)	92, 589, 670
BanII	GRGCYC	2 cut(s)	246, 290
BbsI	GAAGAC	1 cut(s)	824
Bbv12I	GWGCWC	3 cut(s)	113, 246, 420
BbvI	GCAGC	1 cut(s)	754
BccI	CCATC	3 cut(s)	89, 131, 254
BceAI	ACGGC	2 cut(s)	394, 570
BciT130I	CCWGG	1 cut(s)	583
BclI	TGATCA	1 cut(s)	202
BfaI	CTAG	1 cut(s)	824
BfmI	CTRYAG	1 cut(s)	718
BfoI	RGCGCY	1 cut(s)	674
BglI	GCCNNNNNGGC	1 cut(s)	679
BisI	GCNGC	1 cut(s)	768
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	769
BmcAI	AGTACT	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	469
BmeT110I	CYCGRG	2 cut(s)	127, 944
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	4 cut(s)	94, 470, 591, 672
BmrFI	CCNGG	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	824
BplI	GAGNNNNNCTC	1 cut(s)	938
BpmI	CTGGAG	3 cut(s)	338, 639, 792
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse1I	ACTGG	3 cut(s)	321, 622, 929
Bse3DI	GCAATG	2 cut(s)	96, 499
BseBI	CCWGG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMI	GCAATG	2 cut(s)	96, 499
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	3 cut(s)	321, 622, 929
BseRI	GAGGAG	4 cut(s)	636, 639, 642, 645
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	754
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	3 cut(s)	92, 589, 670
BsiHKAI	GWGCWC	3 cut(s)	113, 246, 420
BsiHKCI	CYCGRG	2 cut(s)	127, 944
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	927, 928
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmFI	GGGAC	2 cut(s)	927, 928
BsmI	GAATGC	2 cut(s)	101, 494
BsnI	GGCC	1 cut(s)	407
BsoBI	CYCGRG	2 cut(s)	127, 944
Bsp1286I	GDGCHC	4 cut(s)	113, 246, 290, 420
Bsp143I	GATC	4 cut(s)	202, 391, 541, 865
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	2 cut(s)	389, 635
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	232
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	4 cut(s)	94, 470, 591, 672
BspPI	GGATC	3 cut(s)	399, 549, 860
BspT107I	GGYRCC	3 cut(s)	92, 589, 670
BsrBI	CCGCTC	1 cut(s)	635
BsrDI	GCAATG	2 cut(s)	96, 499
BsrI	ACTGG	3 cut(s)	321, 622, 929
BssMI	GATC	4 cut(s)	202, 391, 541, 865
BssNI	GRCGYC	1 cut(s)	671
Bst2UI	CCWGG	1 cut(s)	583
Bst4CI	ACNGT	5 cut(s)	40, 301, 415, 643, 722
Bst6I	CTCTTC	2 cut(s)	267, 652
BstACI	GRCGYC	1 cut(s)	671
BstDEI	CTNAG	2 cut(s)	240, 558
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	4 cut(s)	205, 394, 544, 868
BstMBI	GATC	4 cut(s)	202, 391, 541, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	679
BstNI	CCWGG	1 cut(s)	583
BstSCI	CCNGG	1 cut(s)	581
BstSFI	CTRYAG	1 cut(s)	718
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	754
BstV2I	GAAGAC	1 cut(s)	824
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	407
CciI	TCATGA	1 cut(s)	885
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	1 cut(s)	469
CseI	GACGC	2 cut(s)	844, 866
Csp6I	GTAC	4 cut(s)	93, 163, 211, 533
CviAII	CATG	4 cut(s)	370, 482, 886, 939
CviQI	GTAC	4 cut(s)	93, 163, 211, 533
DdeI	CTNAG	2 cut(s)	240, 558
DinI	GGCGCC	1 cut(s)	672
DpnI	GATC	4 cut(s)	204, 393, 543, 867
DpnII	GATC	4 cut(s)	202, 391, 541, 865
Eam1104I	CTCTTC	2 cut(s)	267, 652
EarI	CTCTTC	2 cut(s)	267, 652
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	2 cut(s)	246, 290
Eco32I	GATATC	2 cut(s)	564, 715
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	2 cut(s)	127, 944
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	581
EcoRV	GATATC	2 cut(s)	564, 715
EcoT38I	GRGCYC	2 cut(s)	246, 290
EgeI	GGCGCC	1 cut(s)	672
EheI	GGCGCC	1 cut(s)	672
FaeI	CATG	4 cut(s)	373, 485, 889, 942
FaqI	GGGAC	2 cut(s)	927, 928
FatI	CATG	4 cut(s)	369, 481, 885, 938
FauI	CCCGC	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	768
FriOI	GRGCYC	2 cut(s)	246, 290
Fsp4HI	GCNGC	1 cut(s)	768
FspBI	CTAG	1 cut(s)	824
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	1 cut(s)	768
GsuI	CTGGAG	3 cut(s)	338, 639, 792
HaeII	RGCGCY	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	2 cut(s)	844, 866
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	373, 485, 889, 942
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HindIII	AAGCTT	2 cut(s)	350, 785
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	127, 664
Hpy166II	GTNNAC	2 cut(s)	418, 479
Hpy188I	TCNGA	2 cut(s)	348, 568
Hpy188III	TCNNGA	6 cut(s)	17, 127, 206, 886, 901, 944
Hpy8I	GTNNAC	2 cut(s)	418, 479
HpyAV	CCTTC	3 cut(s)	276, 329, 905
HpyCH4III	ACNGT	5 cut(s)	40, 301, 415, 643, 722
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	101, 418, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	679
HpyF3I	CTNAG	2 cut(s)	240, 558
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	373, 485, 889, 942
HspAI	GCGC	1 cut(s)	671
KasI	GGCGCC	1 cut(s)	670
KpnI	GGTACC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	202, 391, 541, 865
LmnI	GCTCC	1 cut(s)	632
Lsp1109I	GCAGC	1 cut(s)	754
MaeI	CTAG	1 cut(s)	824
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	40, 662
MalI	GATC	4 cut(s)	204, 393, 543, 867
MbiI	CCGCTC	1 cut(s)	635
MboI	GATC	4 cut(s)	202, 391, 541, 865
MboII	GAAGA	5 cut(s)	284, 669, 809, 829, 901
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	4 cut(s)	113, 246, 290, 420
MluCI	AATT	6 cut(s)	10, 66, 72, 514, 735, 776
Mly113I	GGCGCC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	888
MnlI	CCTC	9 cut(s)	332, 482, 614, 617, 620, 623, 653, 787, 964
MseI	TTAA	3 cut(s)	309, 402, 578
MslI	CAYNNNNRTG	1 cut(s)	106
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	583
Mva1269I	GAATGC	2 cut(s)	101, 494
MvaI	CCWGG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	679
NarI	GGCGCC	1 cut(s)	671
NdeII	GATC	4 cut(s)	202, 391, 541, 865
NlaIII	CATG	4 cut(s)	373, 485, 889, 942
NlaIV	GGNNCC	4 cut(s)	94, 470, 591, 672
PaeR7I	CTCGAG	1 cut(s)	127
PagI	TCATGA	1 cut(s)	885
PctI	GAATGC	2 cut(s)	101, 494
PkrI	GCNGC	1 cut(s)	769
PluTI	GGCGCC	1 cut(s)	674
PpuMI	RGGWCCY	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	581
PspN4I	GGNNCC	4 cut(s)	94, 470, 591, 672
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	4 cut(s)	94, 164, 212, 534
RsaNI	GTAC	4 cut(s)	93, 163, 211, 533
RseI	CAYNNNNRTG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	309, 402, 578
SatI	GCNGC	1 cut(s)	768
Sau3AI	GATC	4 cut(s)	202, 391, 541, 865
Sau96I	GGNCC	1 cut(s)	469
ScaI	AGTACT	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	583
SduI	GDGCHC	4 cut(s)	113, 246, 290, 420
SfcI	CTRYAG	1 cut(s)	718
SfoI	GGCGCC	1 cut(s)	672
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	469
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	6 cut(s)	10, 66, 72, 514, 735, 776
SsiI	CCGC	2 cut(s)	389, 635
SspDI	GGCGCC	1 cut(s)	670
SspMI	CTAG	1 cut(s)	824
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	581
TaaI	ACNGT	5 cut(s)	40, 301, 415, 643, 722
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	6 cut(s)	128, 185, 246, 453, 645, 743
TasI	AATT	6 cut(s)	10, 66, 72, 514, 735, 776
TatI	WGTACW	1 cut(s)	210
Tru1I	TTAA	3 cut(s)	309, 402, 578
Tru9I	TTAA	3 cut(s)	309, 402, 578
TseI	GCWGC	1 cut(s)	767
TspDTI	ATGAA	8 cut(s)	146, 348, 378, 497, 612, 816, 874, 902
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	72
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	824
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.