Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002831.1

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Forward (+)

51196 .. 51675

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002831.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggctaagatatctgatttcggtttggcgaggctggtgccaaatgaaacaaaaatcaactctactggaggagaaggaggaggagcgggaacagtcgaacagctgagaagaggttacttggcgcctgaatggcagaagaatgctctcatatctgtaaaagctgatatctacagttttggtattatgcttctagagattgtatgttgtagaagaaacatagaagtaaatgtttcaacaccagatgagataattctttcgagttgggtcagtaaatgctttgctgctggagaattagataagcttgtgaaggaagatgaaaatgtagatttgaagaccctagaaagaatggtgaaagtggggttttggtgcgttcaagatgatccagctttgcgtcctttcatgaagaatgtaatcttgatgttggaagggacaatggacataccagttccaccatgtccagagcttccctctcttgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

159

Amino Acids

17.56

Weight (kDa)

4.85

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 121
AccBSI	CCGCTC	1 cut(s)	86
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	234, 331, 374
AluBI	AGCT	5 cut(s)	103, 161, 301, 386, 463
AluI	AGCT	5 cut(s)	103, 161, 301, 386, 463
AlwI	GGATC	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	124
AsuHPI	GGTGA	1 cut(s)	361
BanI	GGYRCC	2 cut(s)	37, 121
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BfaI	CTAG	2 cut(s)	191, 338
BfmI	CTRYAG	1 cut(s)	169
BfoI	RGCGCY	1 cut(s)	125
BglI	GCCNNNNNGGC	1 cut(s)	130
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmiI	GGNNCC	2 cut(s)	39, 123
BpiI	GAAGAC	1 cut(s)	338
BplI	GAGNNNNNCTC	1 cut(s)	452
BpmI	CTGGAG	2 cut(s)	87, 306
BsaHI	GRCGYC	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	70, 443
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	70, 443
BseRI	GAGGAG	3 cut(s)	84, 93, 96
BseXI	GCAGC	1 cut(s)	268
BshNI	GGYRCC	2 cut(s)	37, 121
BslFI	GGGAC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	96
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	39, 123
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	2 cut(s)	37, 121
BsrBI	CCGCTC	1 cut(s)	86
BsrI	ACTGG	2 cut(s)	70, 443
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	94, 173
Bst6I	CTCTTC	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	6, 104
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	338
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	1 cut(s)	124
CseI	GACGC	1 cut(s)	380
CviAII	CATG	2 cut(s)	400, 453
CviJI	RGCY	7 cut(s)	5, 34, 103, 161, 301, 386, 463
CviKI_1	RGCY	7 cut(s)	5, 34, 103, 161, 301, 386, 463
DdeI	CTNAG	2 cut(s)	6, 104
DinI	GGCGCC	1 cut(s)	123
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco32I	GATATC	2 cut(s)	12, 166
EcoRV	GATATC	2 cut(s)	12, 166
EgeI	GGCGCC	1 cut(s)	123
EheI	GGCGCC	1 cut(s)	123
FaeI	CATG	2 cut(s)	403, 456
FaiI	YATR	7 cut(s)	149, 185, 202, 218, 401, 440, 454
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	2 cut(s)	399, 452
FauI	CCCGC	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	2 cut(s)	191, 338
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	87, 306
HaeII	RGCGCY	1 cut(s)	125
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	403, 456
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	299
HphI	GGTGA	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	5 cut(s)	191, 374, 400, 415, 458
HpyAV	CCTTC	3 cut(s)	68, 301, 419
HpyCH4III	ACNGT	2 cut(s)	94, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	2 cut(s)	6, 104
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	403, 456
HspAI	GCGC	1 cut(s)	122
KasI	GGCGCC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	83
LpnPI	CCDG	8 cut(s)	20, 51, 138, 252, 270, 396, 456, 471
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	2 cut(s)	191, 338
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	381
MbiI	CCGCTC	1 cut(s)	86
MboI	GATC	1 cut(s)	379
MboII	GAAGA	6 cut(s)	120, 148, 222, 323, 343, 415
MluCI	AATT	2 cut(s)	249, 290
Mly113I	GGCGCC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	6 cut(s)	24, 62, 71, 74, 104, 478
MspA1I	CMGCKG	1 cut(s)	103
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	130
NarI	GGCGCC	1 cut(s)	122
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	403, 456
NlaIV	GGNNCC	2 cut(s)	39, 123
PagI	TCATGA	1 cut(s)	399
PctI	GAATGC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	283
PluTI	GGCGCC	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	39, 123
PvuII	CAGCTG	1 cut(s)	103
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	379
SetI	ASST	6 cut(s)	105, 115, 163, 303, 388, 465
SfcI	CTRYAG	1 cut(s)	169
SfoI	GGCGCC	1 cut(s)	123
Sse9I	AATT	2 cut(s)	249, 290
SsiI	CCGC	1 cut(s)	86
SspDI	GGCGCC	1 cut(s)	121
SspMI	CTAG	2 cut(s)	191, 338
TaaI	ACNGT	2 cut(s)	94, 173
TaqI	TCGA	2 cut(s)	96, 257
TasI	AATT	2 cut(s)	249, 290
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	4 cut(s)	60, 330, 388, 416
XbaI	TCTAGA	1 cut(s)	190
XspI	CTAG	2 cut(s)	191, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.