Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Forward (+)

31583988 .. 31597328

Gene Structure 13341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG286700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCCGGTAGTTCAGAGCGAGCTGTAATGCCTATTTGGTCAGCTTTGCAACATTCATGCGACGTCCATGGCATTTGTGGCTTCAACAGTTATTGTGAAGTAGTCATGCAAAAGAAAGCAGCTAAAGTTGAGTGCAAATGTTACCCTGGATTTGTTTACAACAACACCAGTCAGAAGTCTCTGGGGTGCTATTATAATTTCACTGTAGACGGTTGCACCGAAAATGAAGAGCCACGACTGCGGTACAAGGTAGAGGCCTTGGACAATACAACGTGGAATAATCATGCTTATTCAGTGACACCTATTCAAAACAAGGAAGATTGCAGTGACTCTTGCCTGGAAGACTACAACTGTTGGGCTGTGCTATATTTAGGTGCTGAATGCAGAAAATACAAGCTTCCACTTCTATTTGGCAAAACAACTTCAAGTATATCCTCTAAGGGTTTCTTCAAAGTTCTTCTACCGAGAAACATGATGCCAAACAATTTTCCCGAATTACCCAAAAGCCCGACGGTCATTTGTGATGAATATGAAGTTGAAACTGGTAATGGAAGAACTATTAAACGGAAAACAAGAAGCAGAGTCATGTTTGAGCGCCAGCATCGGATCCCCCGCCACAATGTCGTCACGGTCAAGCATGTCCCGCTCAACCGCTTGGCCGACGGTAGGATCGAGTCCTCCTCGACTGTGCTCCTCCAATCCCTCGCGTACCTCCCACCGCACCACCTACCTCAGGTTCCGGCTCCGACGATCCCCGCCAACCACCGCGTCACCGAGAAGGAGATGTCCGCCTTCATCAACAGCGTCACCAAAGCCGTCGACCGCGACGACATGCTCTGCGACGACGCCATCATGGCATCTAGTTTGAATGGACTTACTGTTGGAGATCCATTCCCTGAGAATTTCATGGAATCTCCAGCAAGGTCTGAAACCATGTTTTATGCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

316

Amino Acids

35.72

Weight (kDa)

7.51

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AatII	GACGTC	1 cut(s)	66
AccBSI	CCGCTC	1 cut(s)	646
AccI	GTMKAC	2 cut(s)	207, 819
AccII	CGCG	3 cut(s)	707, 768, 825
AciI	CCGC	9 cut(s)	241, 613, 644, 652, 719, 756, 766, 789, 823
AclWI	GGATC	5 cut(s)	601, 614, 677, 745, 881
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	901
AcyI	GRCGYC	2 cut(s)	63, 846
AfaI	GTAC	2 cut(s)	245, 710
AfiI	CCNNNNNNNGG	2 cut(s)	666, 733
AgsI	TTSAA	6 cut(s)	85, 308, 426, 451, 539, 868
AjnI	CCWGG	2 cut(s)	145, 336
AluBI	AGCT	4 cut(s)	23, 44, 122, 397
AluI	AGCT	4 cut(s)	23, 44, 122, 397
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	5 cut(s)	601, 614, 677, 745, 881
AoxI	GGCC	2 cut(s)	255, 657
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	901
AspLEI	GCGC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	763, 799
AxyI	CCTNAGG	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	857
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	2 cut(s)	147, 338
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	598
BglI	GCCNNNNNGGC	1 cut(s)	854
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	147, 338
BmiI	GGNNCC	3 cut(s)	608, 738, 744
BmrFI	CCNGG	2 cut(s)	147, 338
BmsI	GCATC	3 cut(s)	465, 610, 866
BpiI	GAAGAC	1 cut(s)	348
BplI	GAGNNNNNCTC	2 cut(s)	665, 697
BpmI	CTGGAG	1 cut(s)	900
BsaHI	GRCGYC	2 cut(s)	63, 846
BsaJI	CCNNGG	3 cut(s)	67, 145, 258
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	666, 733
Bse1I	ACTGG	2 cut(s)	168, 547
Bse21I	CCTNAGG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	147, 338
BseDI	CCNNGG	3 cut(s)	67, 145, 258
BseLI	CCNNNNNNNGG	2 cut(s)	666, 733
BseMII	CTCAG	2 cut(s)	746, 888
BseNI	ACTGG	2 cut(s)	168, 547
BseRI	GAGGAG	2 cut(s)	670, 683
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	3 cut(s)	707, 768, 825
Bsh1285I	CGRYCG	1 cut(s)	823
BshFI	GGCC	2 cut(s)	257, 659
BsiEI	CGRYCG	1 cut(s)	823
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	2 cut(s)	6, 740
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	666, 733
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	257, 659
Bsp1286I	GDGCHC	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	606, 669, 750, 886
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	9 cut(s)	241, 613, 644, 652, 719, 756, 766, 789, 823
BspANI	GGCC	2 cut(s)	257, 659
BspCNI	CTCAG	2 cut(s)	745, 889
BspFNI	CGCG	3 cut(s)	707, 768, 825
BspLI	GGNNCC	3 cut(s)	608, 738, 744
BspPI	GGATC	5 cut(s)	601, 614, 677, 745, 881
BspQI	GCTCTTC	1 cut(s)	222
BsrBI	CCGCTC	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	168, 547
BssECI	CCNNGG	3 cut(s)	67, 145, 258
BssMI	GATC	4 cut(s)	606, 669, 750, 886
BssNI	GRCGYC	2 cut(s)	63, 846
BssT1I	CCWWGG	2 cut(s)	67, 258
Bst2UI	CCWGG	2 cut(s)	147, 338
Bst4CI	ACNGT	9 cut(s)	89, 205, 212, 353, 514, 631, 665, 688, 880
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	2 cut(s)	63, 846
BstC8I	GCNNGC	2 cut(s)	21, 599
BstDEI	CTNAG	3 cut(s)	438, 732, 897
BstDSI	CCRYGG	1 cut(s)	67
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstFNI	CGCG	3 cut(s)	707, 768, 825
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	4 cut(s)	609, 672, 753, 889
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	606, 669, 750, 886
BstMCI	CGRYCG	1 cut(s)	823
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 238, 643, 854
BstNI	CCWGG	2 cut(s)	147, 338
BstNSI	RCATGY	2 cut(s)	641, 835
BstSCI	CCNGG	2 cut(s)	145, 336
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	3 cut(s)	707, 768, 825
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	2 cut(s)	606, 886
BstYI	RGATCY	2 cut(s)	606, 886
Bsu36I	CCTNAGG	1 cut(s)	732
BsuRI	GGCC	2 cut(s)	257, 659
BtgI	CCRYGG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	3 cut(s)	201, 300, 331
Cac8I	GCNNGC	2 cut(s)	21, 599
CfoI	GCGC	1 cut(s)	597
CseI	GACGC	3 cut(s)	757, 793, 854
Csp6I	GTAC	2 cut(s)	244, 709
CviQI	GTAC	2 cut(s)	244, 709
DdeI	CTNAG	3 cut(s)	438, 732, 897
DpnI	GATC	4 cut(s)	608, 671, 752, 888
DpnII	GATC	4 cut(s)	606, 669, 750, 886
EaeI	YGGCCR	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	778
Eco130I	CCWWGG	2 cut(s)	67, 258
Eco147I	AGGCCT	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoRII	CCWGG	2 cut(s)	145, 336
EcoT14I	CCWWGG	2 cut(s)	67, 258
ErhI	CCWWGG	2 cut(s)	67, 258
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FaqI	GGGAC	1 cut(s)	626
FauI	CCCGC	3 cut(s)	620, 651, 763
FblI	GTMKAC	2 cut(s)	207, 819
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	861
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	900
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	2 cut(s)	257, 659
HapII	CCGG	2 cut(s)	6, 740
HgaI	GACGC	3 cut(s)	757, 793, 854
HhaI	GCGC	1 cut(s)	597
Hin1I	GRCGYC	2 cut(s)	63, 846
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	820
HindII	GTYRAC	1 cut(s)	820
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	329, 582, 674, 911
HpaII	CCGG	2 cut(s)	6, 740
HphI	GGTGA	2 cut(s)	763, 799
Hpy166II	GTNNAC	3 cut(s)	157, 208, 820
Hpy188I	TCNGA	5 cut(s)	16, 174, 606, 747, 928
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	3 cut(s)	157, 208, 820
Hpy99I	CGWCG	8 cut(s)	65, 514, 665, 751, 821, 830, 845, 848
HpyAV	CCTTC	2 cut(s)	772, 802
HpyCH4III	ACNGT	9 cut(s)	89, 205, 212, 353, 514, 631, 665, 688, 880
HpyCH4IV	ACGT	2 cut(s)	63, 272
HpyCH4V	TGCA	7 cut(s)	49, 109, 135, 216, 324, 384, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 238, 643, 854
HpyF3I	CTNAG	3 cut(s)	438, 732, 897
HpySE526I	ACGT	2 cut(s)	63, 272
Hsp92I	GRCGYC	2 cut(s)	63, 846
HspAI	GCGC	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	606, 669, 750, 886
LguI	GCTCTTC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	696, 748
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	3 cut(s)	465, 610, 866
MaeI	CTAG	1 cut(s)	861
MaeII	ACGT	2 cut(s)	63, 272
MaeIII	GTNAC	6 cut(s)	140, 295, 326, 625, 769, 805
MalI	GATC	4 cut(s)	608, 671, 752, 888
MbiI	CCGCTC	1 cut(s)	646
MboI	GATC	4 cut(s)	606, 669, 750, 886
MboII	GAAGA	6 cut(s)	239, 329, 353, 439, 449, 564
MflI	RGATCY	2 cut(s)	606, 886
MhlI	GDGCHC	1 cut(s)	693
MluCI	AATT	4 cut(s)	196, 484, 494, 901
MlyI	GAGTC	3 cut(s)	323, 591, 683
MmeI	TCCRAC	2 cut(s)	770, 862
MnlI	CCTC	8 cut(s)	247, 445, 688, 691, 704, 713, 722, 741
MseI	TTAA	1 cut(s)	561
MspI	CCGG	2 cut(s)	6, 740
MspR9I	CCNGG	2 cut(s)	147, 338
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	2 cut(s)	147, 338
MvnI	CGCG	3 cut(s)	707, 768, 825
MwoI	GCNNNNNNNGC	4 cut(s)	78, 238, 643, 854
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	606, 669, 750, 886
NlaIV	GGNNCC	3 cut(s)	608, 738, 744
NmuCI	GTSAC	5 cut(s)	295, 326, 625, 769, 805
NspI	RCATGY	2 cut(s)	641, 835
PceI	AGGCCT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 669, 825
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	911
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	3 cut(s)	323, 590, 682
PpsI	GAGTC	3 cut(s)	323, 590, 682
PsiI	TTATAA	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	145, 336
PspGI	CCWGG	2 cut(s)	145, 336
PspN4I	GGNNCC	3 cut(s)	608, 738, 744
PsuI	RGATCY	2 cut(s)	606, 886
RsaI	GTAC	2 cut(s)	245, 710
RsaNI	GTAC	2 cut(s)	244, 709
SalI	GTCGAC	1 cut(s)	818
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	606, 669, 750, 886
SchI	GAGTC	3 cut(s)	323, 591, 683
ScrFI	CCNGG	2 cut(s)	147, 338
SduI	GDGCHC	1 cut(s)	693
SfaNI	GCATC	3 cut(s)	465, 610, 866
SfcI	CTRYAG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	196, 484, 494, 901
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	9 cut(s)	241, 613, 644, 652, 719, 756, 766, 789, 823
SspMI	CTAG	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	145, 336
StyI	CCWWGG	2 cut(s)	67, 258
TaaI	ACNGT	9 cut(s)	89, 205, 212, 353, 514, 631, 665, 688, 880
TaiI	ACGT	2 cut(s)	66, 275
TaqI	TCGA	3 cut(s)	672, 683, 819
TasI	AATT	4 cut(s)	196, 484, 494, 901
TfiI	GAWTC	1 cut(s)	911
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	3 cut(s)	208, 300, 331
TseFI	GTSAC	5 cut(s)	295, 326, 625, 769, 805
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	5 cut(s)	295, 326, 625, 769, 805
TspDTI	ATGAA	6 cut(s)	45, 240, 540, 546, 784, 895
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	3 cut(s)	208, 300, 331
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	1 cut(s)	901
XceI	RCATGY	2 cut(s)	641, 835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XmiI	GTMKAC	2 cut(s)	207, 819
XspI	CTAG	1 cut(s)	861
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.