Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Reverse (-)

59329602 .. 59330910

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00124850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCAAAAGAAAGCAGCCGAAGTTGAGTGCAAATGTTACCCTGGATTTGTTTACAACAACGCCAGTCAGAAGTCTCTGGGGTGCTACCATAATTTCACTGTAGACGGCTGCACCGGAAATGAAAAGCCACGGCTGCGGTACAAGTTAGAGGCCTTGGACAATACATCATGGAATAATCAACCTTATTCAGTGACACCTATTCAAAACAAGGAAGATTGCAGTGACTCTTGCCTGGAAGACTGCAACTGTTGGGCGGTGCTATATACAGATGCTAATTGCAGAAAATACAAGCTTCCACTTTTATATGGCAAAACAAATTCAAGTATATCCTCTAAAGGTTTCATCAAAAACATGGACATTTGGCCGGGTTCCATTGCATTCTTGTGTTCTGTCTTTGCCATCTCGAGTTTCACCATATACAAGCACCGAGTTCATAGGTACGAGAACCTCTTGAAACATTCGAGTTTGGCATTAGCTGATCAAGAGTACTTCACTTTACAATCGTTTTCTTATGCTGAGCACGAAAGAGCAACAGATGGCTTCAAGGAAGAGATAGGAAGGGGTACTTTCGGAGCTGTTTATAAAGGAACTCTATCCGGGGGCAGCTTTAATAAAACTGTTGCTGTTAAAAGACTGGAGAAAGTGGTTGATGAAGGAGTAAGGGAATTTATAGCTGAAATTACCACCATTGGACGAACTCACCACAGAAACTTAATTCAGTTGCTTGGTTTCTGTATTGAGGGTTCTCGGAAGCTTCTTGTTTATGAATACATGAGCAACGGCTCACTTGCAGATCTTATCTTTAAGGCCAAAAGTGTGCACTCATCTTGGAAAGAAAGGGTAAGACTTATATTCGATGTGGCTAAAGGGGTCCTCTATTTACATGACGAATGCAGTGTCCATATCATTCATTCCAATTTGAAACCCCAAAAAGTACTCTTGGATCATACTTGGACGGCTAAGATATCTGATTTCGGTTTGGCCAGGCTGGTGCCAAATGAAACAAAAATCAACTCTACCGGAGGAGGAGGAGGAGCGGAAACAGTCGAACAGGTGAGAAGAGGTTACTTGGCGCCTGAATGGCAGAAGAATGCTCTCATATCTGTAAAAGCTGATATCTACAGTTTTGGTATTGTGCTTTTAGAGATTGTATGTTGTAGAAGAAACATAGAAGTAAATGTTTCAACACCAGATGAGATAATTCTTTCGAGTTGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

406

Amino Acids

45.74

Weight (kDa)

8.41

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	181 - 385	5.8e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	182 - 388	1.6e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccB1I	GGYRCC	2 cut(s)	991, 1072
AccBSI	CCGCTC	1 cut(s)	1037
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	3 cut(s)	136, 254, 1037
AclWI	GGATC	1 cut(s)	951
AcoI	YGGCCR	2 cut(s)	362, 981
AcsI	RAATTY	2 cut(s)	316, 665
AcyI	GRCGYC	1 cut(s)	1073
AfaI	GTAC	5 cut(s)	140, 440, 488, 565, 936
AgsI	TTSAA	6 cut(s)	203, 321, 454, 544, 922, 1185
AjnI	CCWGG	3 cut(s)	40, 231, 983
AluBI	AGCT	7 cut(s)	292, 476, 575, 606, 674, 754, 1112
AluI	AGCT	7 cut(s)	292, 476, 575, 606, 674, 754, 1112
Alw21I	GWGCWC	2 cut(s)	522, 822
Alw26I	GTCTC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	951
Ama87I	CYCGRG	1 cut(s)	403
AoxI	GGCC	4 cut(s)	150, 362, 807, 981
ApaLI	GTGCAC	1 cut(s)	818
ApeKI	GCWGC	4 cut(s)	14, 108, 133, 603
ApoI	RAATTY	2 cut(s)	316, 665
ArsI	GACNNNNNNTTYG	2 cut(s)	882, 914
AspLEI	GCGC	1 cut(s)	1075
AspS9I	GGNCC	1 cut(s)	871
AsuC2I	CCSGG	2 cut(s)	366, 598
AsuHPI	GGTGA	3 cut(s)	403, 692, 1066
AvaI	CYCGRG	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	871
BaeGI	GKGCMC	1 cut(s)	822
BalI	TGGCCA	1 cut(s)	983
BanI	GGYRCC	2 cut(s)	991, 1072
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	522, 822
BbvI	GCAGC	4 cut(s)	26, 95, 120, 615
BccI	CCATC	2 cut(s)	407, 530
BceAI	ACGGC	4 cut(s)	121, 146, 796, 972
BciT130I	CCWGG	3 cut(s)	42, 233, 985
BclI	TGATCA	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	366, 598
BcoDI	GTCTC	1 cut(s)	78
BfmI	CTRYAG	2 cut(s)	99, 1120
BfoI	RGCGCY	1 cut(s)	1076
BglI	GCCNNNNNGGC	1 cut(s)	1081
BglII	AGATCT	1 cut(s)	793
BisI	GCNGC	4 cut(s)	15, 109, 134, 604
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	4 cut(s)	16, 110, 135, 605
BmcAI	AGTACT	2 cut(s)	488, 936
Bme1390I	CCNGG	5 cut(s)	42, 233, 366, 598, 985
Bme18I	GGWCC	1 cut(s)	871
BmeT110I	CYCGRG	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	871
BmiI	GGNNCC	4 cut(s)	370, 872, 993, 1074
BmrFI	CCNGG	5 cut(s)	42, 233, 366, 598, 985
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	656
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuMI	CCSGG	2 cut(s)	366, 598
BsaHI	GRCGYC	1 cut(s)	1073
BsaJI	CCNNGG	4 cut(s)	40, 128, 153, 597
BsaWI	WCCGGW	2 cut(s)	113, 1019
Bse1I	ACTGG	2 cut(s)	63, 639
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	3 cut(s)	42, 233, 985
BseDI	CCNNGG	4 cut(s)	40, 128, 153, 597
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	63, 639
BseRI	GAGGAG	4 cut(s)	1038, 1041, 1044, 1047
BseSI	GKGCMC	1 cut(s)	822
BseXI	GCAGC	4 cut(s)	26, 95, 120, 615
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	4 cut(s)	152, 364, 809, 983
BshNI	GGYRCC	2 cut(s)	991, 1072
BsiHKAI	GWGCWC	2 cut(s)	522, 822
BsiHKCI	CYCGRG	1 cut(s)	403
BsiSI	CCGG	4 cut(s)	114, 365, 597, 1020
BsmAI	GTCTC	1 cut(s)	78
BsmI	GAATGC	3 cut(s)	377, 896, 1096
BsnI	GGCC	4 cut(s)	152, 364, 809, 983
BsoBI	CYCGRG	1 cut(s)	403
Bsp1286I	GDGCHC	2 cut(s)	522, 822
Bsp143I	GATC	3 cut(s)	478, 793, 943
Bsp1720I	GCTNAGC	1 cut(s)	516
BspACI	CCGC	3 cut(s)	136, 254, 1037
BspANI	GGCC	4 cut(s)	152, 364, 809, 983
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	370, 872, 993, 1074
BspPI	GGATC	1 cut(s)	951
BspT107I	GGYRCC	2 cut(s)	991, 1072
BsrBI	CCGCTC	1 cut(s)	1037
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	63, 639
BssECI	CCNNGG	4 cut(s)	40, 128, 153, 597
BssMI	GATC	3 cut(s)	478, 793, 943
BssNI	GRCGYC	1 cut(s)	1073
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	42, 233, 985
Bst4CI	ACNGT	5 cut(s)	100, 248, 619, 1045, 1124
Bst6I	CTCTTC	2 cut(s)	543, 1054
BstACI	GRCGYC	1 cut(s)	1073
BstDEI	CTNAG	2 cut(s)	516, 960
BstDSI	CCRYGG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	1076
BstHHI	GCGC	1 cut(s)	1075
BstKTI	GATC	3 cut(s)	481, 796, 946
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	478, 793, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 1081
BstNI	CCWGG	3 cut(s)	42, 233, 985
BstSCI	CCNGG	5 cut(s)	40, 231, 364, 596, 983
BstSFI	CTRYAG	2 cut(s)	99, 1120
BstSLI	GKGCMC	1 cut(s)	822
BstV1I	GCAGC	4 cut(s)	26, 95, 120, 615
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BsuRI	GGCC	4 cut(s)	152, 364, 809, 983
BtgI	CCRYGG	1 cut(s)	128
BtsI	GCAGTG	2 cut(s)	226, 901
BtsIMutI	CAGTG	4 cut(s)	96, 195, 226, 901
CfoI	GCGC	1 cut(s)	1075
Cfr13I	GGNCC	1 cut(s)	871
Csp6I	GTAC	5 cut(s)	139, 439, 487, 564, 935
CviAII	CATG	4 cut(s)	168, 352, 772, 884
CviQI	GTAC	5 cut(s)	139, 439, 487, 564, 935
DdeI	CTNAG	2 cut(s)	516, 960
DinI	GGCGCC	1 cut(s)	1074
DpnI	GATC	3 cut(s)	480, 795, 945
DpnII	GATC	3 cut(s)	478, 793, 943
EaeI	YGGCCR	2 cut(s)	362, 981
Eam1104I	CTCTTC	2 cut(s)	543, 1054
EarI	CTCTTC	2 cut(s)	543, 1054
Eco130I	CCWWGG	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	152
Eco32I	GATATC	2 cut(s)	966, 1117
Eco47I	GGWCC	1 cut(s)	871
Eco88I	CYCGRG	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	871
EcoRII	CCWGG	3 cut(s)	40, 231, 983
EcoRV	GATATC	2 cut(s)	966, 1117
EcoT14I	CCWWGG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	1074
EheI	GGCGCC	1 cut(s)	1074
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	4 cut(s)	171, 355, 775, 887
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FatI	CATG	4 cut(s)	167, 351, 771, 883
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	15, 109, 134, 604
Fsp4HI	GCNGC	4 cut(s)	15, 109, 134, 604
GlaI	GCGC	1 cut(s)	1074
GluI	GCNGC	4 cut(s)	15, 109, 134, 604
GsuI	CTGGAG	1 cut(s)	656
HaeII	RGCGCY	1 cut(s)	1076
HaeIII	GGCC	4 cut(s)	152, 364, 809, 983
HapII	CCGG	4 cut(s)	114, 365, 597, 1020
HhaI	GCGC	1 cut(s)	1075
Hin1I	GRCGYC	1 cut(s)	1073
Hin1II	CATG	4 cut(s)	171, 355, 775, 887
Hin6I	GCGC	1 cut(s)	1073
HinP1I	GCGC	1 cut(s)	1073
HindIII	AAGCTT	2 cut(s)	290, 752
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	4 cut(s)	114, 365, 597, 1020
HphI	GGTGA	3 cut(s)	403, 692, 1066
Hpy166II	GTNNAC	3 cut(s)	52, 103, 820
Hpy188I	TCNGA	4 cut(s)	69, 572, 750, 970
Hpy188III	TCNNGA	3 cut(s)	403, 451, 482
Hpy8I	GTNNAC	3 cut(s)	52, 103, 820
HpyAV	CCTTC	2 cut(s)	552, 647
HpyCH4III	ACNGT	5 cut(s)	100, 248, 619, 1045, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 1081
HpyF3I	CTNAG	2 cut(s)	516, 960
Hsp92I	GRCGYC	1 cut(s)	1073
Hsp92II	CATG	4 cut(s)	171, 355, 775, 887
HspAI	GCGC	1 cut(s)	1073
KasI	GGCGCC	1 cut(s)	1072
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	478, 793, 943
LmnI	GCTCC	2 cut(s)	572, 1034
Lsp1109I	GCAGC	4 cut(s)	26, 95, 120, 615
LweI	GCATC	1 cut(s)	259
MaeIII	GTNAC	4 cut(s)	35, 190, 221, 1064
MalI	GATC	3 cut(s)	480, 795, 945
MbiI	CCGCTC	1 cut(s)	1037
MboI	GATC	3 cut(s)	478, 793, 943
MboII	GAAGA	6 cut(s)	224, 248, 560, 1071, 1099, 1173
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	2 cut(s)	522, 822
MlsI	TGGCCA	1 cut(s)	983
MluCI	AATT	8 cut(s)	91, 274, 316, 665, 678, 714, 916, 1200
MluNI	TGGCCA	1 cut(s)	983
Mly113I	GGCGCC	1 cut(s)	1073
MlyI	GAGTC	1 cut(s)	218
Mox20I	TGGCCA	1 cut(s)	983
MscI	TGGCCA	1 cut(s)	983
MseI	TTAA	4 cut(s)	609, 627, 713, 804
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	983
MspI	CCGG	4 cut(s)	114, 365, 597, 1020
MspR9I	CCNGG	5 cut(s)	42, 233, 366, 598, 985
Mva1269I	GAATGC	3 cut(s)	377, 896, 1096
MvaI	CCWGG	3 cut(s)	42, 233, 985
MwoI	GCNNNNNNNGC	2 cut(s)	133, 1081
NarI	GGCGCC	1 cut(s)	1073
NciI	CCSGG	2 cut(s)	366, 598
NdeII	GATC	3 cut(s)	478, 793, 943
NlaIII	CATG	4 cut(s)	171, 355, 775, 887
NlaIV	GGNNCC	4 cut(s)	370, 872, 993, 1074
NmuCI	GTSAC	2 cut(s)	190, 221
PaeR7I	CTCGAG	1 cut(s)	403
PceI	AGGCCT	1 cut(s)	152
PctI	GAATGC	3 cut(s)	377, 896, 1096
PkrI	GCNGC	4 cut(s)	16, 110, 135, 605
PleI	GAGTC	1 cut(s)	218
PluTI	GGCGCC	1 cut(s)	1076
PpsI	GAGTC	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	871
PsiI	TTATAA	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	871
Psp6I	CCWGG	3 cut(s)	40, 231, 983
PspGI	CCWGG	3 cut(s)	40, 231, 983
PspN4I	GGNNCC	4 cut(s)	370, 872, 993, 1074
PspPI	GGNCC	1 cut(s)	871
PspPPI	RGGWCCY	1 cut(s)	871
PsrI	GAACNNNNNNTAC	2 cut(s)	727, 759
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	5 cut(s)	140, 440, 488, 565, 936
RsaNI	GTAC	5 cut(s)	139, 439, 487, 564, 935
RseI	CAYNNNNRTG	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	609, 627, 713, 804
SatI	GCNGC	4 cut(s)	15, 109, 134, 604
Sau3AI	GATC	3 cut(s)	478, 793, 943
Sau96I	GGNCC	1 cut(s)	871
ScaI	AGTACT	2 cut(s)	488, 936
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	5 cut(s)	42, 233, 366, 598, 985
SduI	GDGCHC	2 cut(s)	522, 822
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	2 cut(s)	99, 1120
SfoI	GGCGCC	1 cut(s)	1074
Sfr274I	CTCGAG	1 cut(s)	403
SinI	GGWCC	1 cut(s)	871
SlaI	CTCGAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	8 cut(s)	91, 274, 316, 665, 678, 714, 916, 1200
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	3 cut(s)	136, 254, 1037
SspDI	GGCGCC	1 cut(s)	1072
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	5 cut(s)	40, 231, 364, 596, 983
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	5 cut(s)	100, 248, 619, 1045, 1124
TaqI	TCGA	5 cut(s)	404, 461, 855, 1047, 1208
TasI	AATT	8 cut(s)	91, 274, 316, 665, 678, 714, 916, 1200
TatI	WGTACW	2 cut(s)	486, 934
Tru1I	TTAA	4 cut(s)	609, 627, 713, 804
Tru9I	TTAA	4 cut(s)	609, 627, 713, 804
TscAI	CASTG	4 cut(s)	103, 195, 226, 901
TseFI	GTSAC	2 cut(s)	190, 221
TseI	GCWGC	4 cut(s)	14, 108, 133, 603
Tsp45I	GTSAC	2 cut(s)	190, 221
TspDTI	ATGAA	7 cut(s)	135, 331, 422, 666, 780, 899, 1014
TspRI	CASTG	4 cut(s)	103, 195, 226, 901
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	871
XapI	RAATTY	2 cut(s)	316, 665
XhoI	CTCGAG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	102
ZrmI	AGTACT	2 cut(s)	488, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.