Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Forward (+)

31726328 .. 31728272

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG287100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCTACTAGTGGAGACGTTATAGCCCACCCACCAAACAGCTCTGCTGGTTATTGGCTTACAAATGCCTCTTATTTAGATTATTATTACCAACTCAGTCTCAGTCTGAACCTGTCGGGATTTCTCGTCCTGAATGAAGACTTCAGTGGTAACACCATTCAGGTTGTCGCAAACGGCTCGTACCATGGCCTACAAGACAATCAAACTACACTCTACCGGGCAACACTTGATGTCGACGGGAATTTCAGAGTGTACTTCCATAGCTTTCTGATGGCCCGTGTTATGGTAATTTGGTCTGCTTTTCAAAGTCCATGTGATGTCCAAGGCACTTGTGGCTTCAACAGTTATTGTGAAGTAGTCATGCAAAAGAAAGCAGCTGAAGTTGAGTGCAAATGTTACACTGGATTTGTTTACAACAACGCCAGTCAGAAGACTCTGGGGTGCTACCATAATTTCACTGTAGACGGCTGCACCGGAAATGAAAAGCCACGGCTGCGGTACAAGTTAGAGTCCTTGGACAATACATCGTGGAATAATCATCCTTATTCAGTGACACCTATTCAAAACAAGGAAGATTGCAGTGACTCTTGCCTGGAAGACTGCAACTGTTGGGCTGTGCTATATACAGATGCTAATTGCAGCAAATACAAGCTTCCACTTTTATATGGCAAAAAAAATTCAAGTATATCCTCTAGAGGTTTCATCAAAGTGCTTCTATCGGGAAACACGGACAGTATGCCAAATAATTTTCCCGACCTACGCAAAAGTCCGACGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

259

Amino Acids

29.03

Weight (kDa)

5.73

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	57 - 138	2.6e-07	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	5, 234, 462
AciI	CCGC	1 cut(s)	496
AcsI	RAATTY	2 cut(s)	241, 676
AcuI	CTGAAG	2 cut(s)	127, 399
AfaI	GTAC	3 cut(s)	182, 254, 500
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	4 cut(s)	305, 340, 563, 681
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	4 cut(s)	42, 264, 377, 652
AluI	AGCT	4 cut(s)	42, 264, 377, 652
Alw26I	GTCTC	2 cut(s)	9, 104
AoxI	GGCC	2 cut(s)	187, 273
ApeKI	GCWGC	4 cut(s)	374, 468, 493, 639
ApoI	RAATTY	2 cut(s)	241, 676
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	218
BbsI	GAAGAC	3 cut(s)	144, 437, 603
BbvI	GCAGC	4 cut(s)	386, 455, 480, 651
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	3 cut(s)	190, 481, 506
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciT130I	CCWGG	1 cut(s)	593
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	2 cut(s)	9, 104
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 693
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	4 cut(s)	375, 469, 494, 640
BlsI	GCNGC	4 cut(s)	376, 470, 495, 641
Bme1390I	CCNGG	2 cut(s)	218, 593
BmgT120I	GGNCC	1 cut(s)	274
BmrFI	CCNGG	2 cut(s)	218, 593
BmsI	GCATC	1 cut(s)	619
BpiI	GAAGAC	3 cut(s)	144, 437, 603
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	4 cut(s)	184, 322, 488, 513
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	406, 423
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	4 cut(s)	184, 322, 488, 513
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	109, 115
BseNI	ACTGG	2 cut(s)	406, 423
BseXI	GCAGC	4 cut(s)	386, 455, 480, 651
BsgI	GTGCAG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	189, 275
BsiSI	CCGG	2 cut(s)	217, 474
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	9, 104
BsmBI	CGTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	189, 275
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	2 cut(s)	189, 275
BspCNI	CTCAG	2 cut(s)	108, 114
BsrI	ACTGG	2 cut(s)	406, 423
BssECI	CCNNGG	4 cut(s)	184, 322, 488, 513
BssT1I	CCWWGG	3 cut(s)	184, 322, 513
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	4 cut(s)	344, 460, 608, 734
BstDEI	CTNAG	2 cut(s)	95, 101
BstDSI	CCRYGG	2 cut(s)	184, 488
BstF5I	GGATG	1 cut(s)	538
BstMAI	GTCTC	2 cut(s)	9, 104
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 493
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	216, 591
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	4 cut(s)	386, 455, 480, 651
BstV2I	GAAGAC	3 cut(s)	144, 437, 603
BsuRI	GGCC	2 cut(s)	189, 275
BtgI	CCRYGG	2 cut(s)	184, 488
BtsCI	GGATG	1 cut(s)	538
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	5 cut(s)	151, 399, 456, 555, 586
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	3 cut(s)	181, 253, 499
CviAII	CATG	3 cut(s)	185, 312, 361
CviQI	GTAC	3 cut(s)	181, 253, 499
DdeI	CTNAG	2 cut(s)	95, 101
Eco130I	CCWWGG	3 cut(s)	184, 322, 513
Eco57I	CTGAAG	2 cut(s)	127, 399
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	3 cut(s)	184, 322, 513
ErhI	CCWWGG	3 cut(s)	184, 322, 513
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	3 cut(s)	188, 315, 364
FatI	CATG	3 cut(s)	184, 311, 360
FblI	GTMKAC	3 cut(s)	5, 234, 462
Fnu4HI	GCNGC	4 cut(s)	375, 469, 494, 640
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	4 cut(s)	375, 469, 494, 640
FspBI	CTAG	2 cut(s)	9, 693
GluI	GCNGC	4 cut(s)	375, 469, 494, 640
HaeIII	GGCC	2 cut(s)	189, 275
HapII	CCGG	2 cut(s)	217, 474
Hin1II	CATG	3 cut(s)	188, 315, 364
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	3 cut(s)	433, 509, 584
HpaII	CCGG	2 cut(s)	217, 474
Hpy166II	GTNNAC	5 cut(s)	6, 235, 253, 412, 463
Hpy188I	TCNGA	5 cut(s)	108, 248, 270, 429, 771
Hpy188III	TCNNGA	5 cut(s)	117, 130, 693, 720, 752
Hpy8I	GTNNAC	5 cut(s)	6, 235, 253, 412, 463
Hpy99I	CGWCG	2 cut(s)	239, 775
HpyCH4III	ACNGT	4 cut(s)	344, 460, 608, 734
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	6 cut(s)	364, 390, 471, 579, 603, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 493
HpyF3I	CTNAG	2 cut(s)	95, 101
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	188, 315, 364
Lsp1109I	GCAGC	4 cut(s)	386, 455, 480, 651
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	2 cut(s)	9, 693
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	4 cut(s)	149, 395, 550, 581
MboII	GAAGA	4 cut(s)	149, 442, 584, 608
MluCI	AATT	6 cut(s)	241, 288, 451, 634, 676, 745
MlyI	GAGTC	3 cut(s)	427, 518, 578
MnlI	CCTC	3 cut(s)	79, 689, 700
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	2 cut(s)	217, 474
MspR9I	CCNGG	2 cut(s)	218, 593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	333, 493
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	184
NlaIII	CATG	3 cut(s)	188, 315, 364
NmuCI	GTSAC	2 cut(s)	550, 581
PkrI	GCNGC	4 cut(s)	376, 470, 495, 641
PleI	GAGTC	3 cut(s)	427, 517, 578
PpsI	GAGTC	3 cut(s)	427, 517, 578
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspPI	GGNCC	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	182, 254, 500
RsaNI	GTAC	3 cut(s)	181, 253, 499
RseI	CAYNNNNRTG	1 cut(s)	707
SalI	GTCGAC	1 cut(s)	233
SatI	GCNGC	4 cut(s)	375, 469, 494, 640
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	3 cut(s)	427, 518, 578
ScrFI	CCNGG	2 cut(s)	218, 593
SfaNI	GCATC	1 cut(s)	619
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	707
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	6 cut(s)	241, 288, 451, 634, 676, 745
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	9, 693
StyD4I	CCNGG	2 cut(s)	216, 591
StyI	CCWWGG	3 cut(s)	184, 322, 513
TaaI	ACNGT	4 cut(s)	344, 460, 608, 734
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	234
TasI	AATT	6 cut(s)	241, 288, 451, 634, 676, 745
TatI	WGTACW	1 cut(s)	252
TscAI	CASTG	5 cut(s)	151, 406, 463, 555, 586
TseFI	GTSAC	2 cut(s)	550, 581
TseI	GCWGC	4 cut(s)	374, 468, 493, 639
Tsp45I	GTSAC	2 cut(s)	550, 581
TspDTI	ATGAA	3 cut(s)	150, 495, 691
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	5 cut(s)	151, 406, 463, 555, 586
XapI	RAATTY	2 cut(s)	241, 676
XbaI	TCTAGA	1 cut(s)	692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	3 cut(s)	5, 234, 462
XspI	CTAG	2 cut(s)	9, 693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.