Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003934

Physical Location & Seq

Genomic Coordinates Reverse (-)

21052312 .. 21053012

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0218400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAGAAAATATGCAAGAACTAGCAATAGTATACAGAATATACTATAAATTGATAAGTATCACAGTAGAACCTAAGACAAGGATATCAAATATCCCAAGTCCTGAAAATATCAGGATAAACAAGAATTTCAGAAGATGCAATAGCACCAGAGAAGCAAGTAGAAGCGGTATTGATGCAGAGGTATTGGCAGTAATAGAGGCTTTAGGGGTTGCCTGGAGAAAGGGTTGGACTCACTTATGGCTAGAAACAGACTCATATCTTGTGGTGCATTACTTCACTAATCCTAAGTTAATTCCATGGAGATTGCGAGTGGTGTGGAATAATTGTGTATATCTCTCTCATCTAATCCACTTCAGAGTTACTCACATTTACAGGGAAGGCAATATGGTAGCTGATGCGCTTGCTAATTATGGTGCTACAAATGTTGGTGCTAGGTGGTGGGATTCTCTACCTACCTTCATTGCTGGACATTATGGAAAAGACTTATCGTCTGCTGTCTCTTATAGATTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

172

Amino Acids

20.06

Weight (kDa)

9.66

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	53 - 138	6.2e-15	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23390
prunus_persica	Prupe.6G165100_v2.0.a1 Prupe.6G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118681 RchiOBHm_Chr2g0118741 RchiOBHm_Chr2g0118761
rosa_laevigata	RLG00000018419
rosa_multiflora	Rmu_co8322353.1_g000001 Rmu_sc0001814.1_g000026 Rmu_sc0001814.1_g000032 Rmu_sc0002700.1_g000009 Rmu_sc0002700.1_g000033 Rmu_sc0002700.1_g000035 Rmu_sc0002831.1_g000014 Rmu_sc0002831.1_g000017 Rmu_sc0002831.1_g000031 Rmu_sc0004399.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124760 Rroxscaffold_2G00124850 Rroxscaffold_2G00124890 Rroxscaffold_2G00125410 Rroxscaffold_2G00125420
rosa_rugosa	Rorug02G0218400
rosa_samantha	Rh2AG274700 Rh2AG275000 Rh2AG275300 Rh2BG286500 Rh2BG286700 Rh2BG287100 Rh2DG301500 Rh2DG301700
rosa_wichuraiana	Rw2G021850 Rw2G021890 Rw2G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	340
AhdI	GACNNNNNGTC	1 cut(s)	490
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	1 cut(s)	395
AluI	AGCT	1 cut(s)	395
Alw26I	GTCTC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	505
BfaI	CTAG	3 cut(s)	23, 245, 435
Bme1390I	CCNGG	1 cut(s)	217
BmeRI	GACNNNNNGTC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	3 cut(s)	128, 166, 388
BpmI	CTGGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	299
BseJI	GATNNNNATC	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	505
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	462
BssECI	CCNNGG	1 cut(s)	299
BssNAI	GTATAC	1 cut(s)	34
BssT1I	CCWWGG	1 cut(s)	299
Bst1107I	GTATAC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	75, 288
BstDSI	CCRYGG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	505
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstZ17I	GTATAC	1 cut(s)	34
BtgI	CCRYGG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	403
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	3 cut(s)	203, 244, 395
CviKI_1	RGCY	3 cut(s)	203, 244, 395
DdeI	CTNAG	2 cut(s)	75, 288
DriI	GACNNNNNGTC	1 cut(s)	490
Eam1105I	GACNNNNNGTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	299
FaeI	CATG	1 cut(s)	303
FatI	CATG	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	23, 245, 435
GlaI	GCGC	1 cut(s)	402
GsuI	CTGGAG	1 cut(s)	238
HhaI	GCGC	1 cut(s)	403
Hin1II	CATG	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	3 cut(s)	232, 254, 446
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	134, 359
Hpy188III	TCNNGA	2 cut(s)	104, 115
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	374, 469
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	4 cut(s)	16, 141, 179, 271
HpyF3I	CTNAG	2 cut(s)	75, 288
Hsp92II	CATG	1 cut(s)	303
HspAI	GCGC	1 cut(s)	401
LpnPI	CCDG	7 cut(s)	100, 117, 163, 202, 229, 361, 453
LweI	GCATC	3 cut(s)	128, 166, 388
MaeI	CTAG	3 cut(s)	23, 245, 435
MaeIII	GTNAC	1 cut(s)	361
MboII	GAAGA	1 cut(s)	147
MluCI	AATT	5 cut(s)	50, 127, 294, 325, 409
MlyI	GAGTC	2 cut(s)	226, 248
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	2 cut(s)	175, 193
MseI	TTAA	2 cut(s)	293, 517
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	299
NlaIII	CATG	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	446
PleI	GAGTC	2 cut(s)	226, 248
PpsI	GAGTC	2 cut(s)	226, 248
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	293, 517
SchI	GAGTC	2 cut(s)	226, 248
ScrFI	CCNGG	1 cut(s)	217
SetI	ASST	6 cut(s)	76, 186, 397, 440, 457, 461
SfaNI	GCATC	3 cut(s)	128, 166, 388
Sse9I	AATT	5 cut(s)	50, 127, 294, 325, 409
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	3 cut(s)	23, 245, 435
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	299
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	5 cut(s)	50, 127, 294, 325, 409
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	2 cut(s)	293, 517
Tru9I	TTAA	2 cut(s)	293, 517
TspDTI	ATGAA	2 cut(s)	17, 451
XapI	RAATTY	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	3 cut(s)	23, 245, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.