Rmu_sc0000078.1_g000010

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000078.1
OG0001877
Physical Location & Seq
Reverse (-)
43860 .. 44875
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
atgttgactccttcaatcaagactctgtcgagggagttggatatgctgcggattgaagaagacccgcctccgggtgtggagatgagtatggtgctacctgacttggacagattgatgcttgtacaagacccacctgctggcgcggagattagtttggtgctcccaggtttggacagattgcggcttgtagaacactcaaccgcaggcggagaggatgtttttgcaaggctgcagaaaaaagtgtcggattacccacccccgggcgcagattatactcgtgcaaggtataggctgtttaaagagttgaagaggctgctacaagacccacctgcagggatcagtgtggttcccccggacttctacaattgcgatataatgtcgtggaatgttgttatagctcctcactccttggattctccttgggagggaggcgcatttaagttgactcttcagtttagtgaggattatccactcaaaccaccaatggtgcgatttgtttctcaaatgtttcatccaaacatttctgcagatggaattatgtcttttaataatttactggatcggtggccttctataaatgacgtggaagatatactcaagtatatccagtccctaatatgtcatcccaacccgaagtgtcctgcaaattctgaagctttctacatgtacttcagtgagaacagactggagtacaaccgaagagtgaggatgatcgtggatcagagttggatggcagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

246

Amino Acids

28.13

Weight (kDa)

5.0

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 97 - 237 1.6e-33 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 142, 337
Acc36I ACCTGC 2 cut(s) 142, 337
AccB7I CCANNNNNTGG 1 cut(s) 137
AccII CGCG 1 cut(s) 143
AciI CCGC 6 cut(s) 49, 65, 143, 181, 201, 207
AclWI GGATC 3 cut(s) 344, 567, 726
AcsI RAATTY 1 cut(s) 646
AcuI CTGAAG 3 cut(s) 434, 655, 672
AfaI GTAC 3 cut(s) 123, 668, 692
AfiI CCNNNNNNNGG 8 cut(s) 70, 71, 137, 169, 259, 260, 332, 425
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 3 cut(s) 15, 56, 307
AjiI CACGTC 1 cut(s) 583
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 2 cut(s) 398, 656
AluI AGCT 2 cut(s) 398, 656
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 3 cut(s) 344, 567, 726
Ama87I CYCGRG 1 cut(s) 259
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 3 cut(s) 46, 229, 313
ApoI RAATTY 1 cut(s) 646
AspLEI GCGC 3 cut(s) 143, 266, 434
AsuC2I CCSGG 4 cut(s) 72, 260, 261, 353
AvaI CYCGRG 1 cut(s) 259
BauI CACGAG 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 3 cut(s) 33, 216, 300
BccI CCATC 2 cut(s) 524, 724
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 4 cut(s) 72, 260, 261, 353
BfaI CTAG 1 cut(s) 739
BfmI CTRYAG 3 cut(s) 230, 330, 525
BfuAI ACCTGC 2 cut(s) 142, 337
BisI GCNGC 4 cut(s) 47, 182, 230, 314
BlsI GCNGC 4 cut(s) 48, 183, 231, 315
Bme1390I CCNGG 5 cut(s) 72, 165, 260, 261, 353
BmeT110I CYCGRG 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 583
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 5 cut(s) 72, 165, 260, 261, 353
BmsI GCATC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 4 cut(s) 72, 260, 261, 353
BsaJI CCNNGG 6 cut(s) 163, 258, 259, 351, 408, 419
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 8 cut(s) 70, 71, 137, 169, 259, 260, 332, 425
Bse1I ACTGG 3 cut(s) 561, 607, 690
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 6 cut(s) 163, 258, 259, 351, 408, 419
BseGI GGATG 5 cut(s) 220, 511, 622, 714, 735
BseLI CCNNNNNNNGG 8 cut(s) 70, 71, 137, 169, 259, 260, 332, 425
BseNI ACTGG 3 cut(s) 561, 607, 690
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 3 cut(s) 33, 216, 300
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 3 cut(s) 71, 260, 353
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 8 cut(s) 70, 71, 137, 169, 259, 260, 332, 425
BsmFI GGGAC 1 cut(s) 595
BsnI GGCC 1 cut(s) 568
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 121
Bsp143I GATC 4 cut(s) 336, 559, 711, 718
BspACI CCGC 6 cut(s) 49, 65, 143, 181, 201, 207
BspANI GGCC 1 cut(s) 568
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 348
BspMAI CTGCAG 3 cut(s) 234, 334, 529
BspMI ACCTGC 2 cut(s) 142, 337
BspPI GGATC 3 cut(s) 344, 567, 726
BsrGI TGTACA 1 cut(s) 121
BsrI ACTGG 3 cut(s) 561, 607, 690
BssECI CCNNGG 6 cut(s) 163, 258, 259, 351, 408, 419
BssMI GATC 4 cut(s) 336, 559, 711, 718
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 2 cut(s) 408, 419
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 165
Bst6I CTCTTC 3 cut(s) 302, 453, 694
BstAUI TGTACA 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 139, 205
BstF5I GGATG 5 cut(s) 220, 511, 622, 714, 735
BstFNI CGCG 1 cut(s) 143
BstHHI GCGC 3 cut(s) 143, 266, 434
BstKTI GATC 4 cut(s) 339, 562, 714, 721
BstMBI GATC 4 cut(s) 336, 559, 711, 718
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 5 cut(s) 70, 163, 258, 259, 351
BstSFI CTRYAG 3 cut(s) 230, 330, 525
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 33, 216, 300
BstV2I GAAGAC 1 cut(s) 66
BsuRI GGCC 1 cut(s) 568
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 5 cut(s) 220, 511, 622, 714, 735
BtsIMutI CAGTG 2 cut(s) 346, 679
BveI ACCTGC 2 cut(s) 142, 337
Cac8I GCNNGC 2 cut(s) 139, 205
CfoI GCGC 3 cut(s) 143, 266, 434
Cfr9I CCCGGG 1 cut(s) 259
Csp6I GTAC 3 cut(s) 122, 667, 691
CviAII CATG 1 cut(s) 664
CviJI RGCY 7 cut(s) 184, 229, 292, 313, 398, 568, 656
CviKI_1 RGCY 7 cut(s) 184, 229, 292, 313, 398, 568, 656
CviQI GTAC 3 cut(s) 122, 667, 691
DpnI GATC 4 cut(s) 338, 561, 713, 720
DpnII GATC 4 cut(s) 336, 559, 711, 718
DraI TTTAAA 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 302, 453, 694
EarI CTCTTC 3 cut(s) 302, 453, 694
EciI GGCGGA 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 408, 419
Eco57I CTGAAG 3 cut(s) 434, 655, 672
Eco88I CYCGRG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 408, 419
ErhI CCWWGG 2 cut(s) 408, 419
FaeI CATG 1 cut(s) 667
FaqI GGGAC 1 cut(s) 595
FatI CATG 1 cut(s) 663
FauI CCCGC 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 47, 182, 230, 314
FokI GGATG 4 cut(s) 227, 498, 609, 721
Fsp4HI GCNGC 4 cut(s) 47, 182, 230, 314
FspBI CTAG 1 cut(s) 739
GlaI GCGC 3 cut(s) 142, 265, 433
GluI GCNGC 4 cut(s) 47, 182, 230, 314
GsuI CTGGAG 1 cut(s) 707
HaeIII GGCC 1 cut(s) 568
HapII CCGG 3 cut(s) 71, 260, 353
HhaI GCGC 3 cut(s) 143, 266, 434
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 3 cut(s) 141, 264, 432
HinP1I GCGC 3 cut(s) 141, 264, 432
HincII GTYRAC 2 cut(s) 6, 444
HindII GTYRAC 2 cut(s) 6, 444
HindIII AAGCTT 1 cut(s) 654
HinfI GANTC 4 cut(s) 7, 22, 413, 445
HpaII CCGG 3 cut(s) 71, 260, 353
Hpy166II GTNNAC 2 cut(s) 6, 444
Hpy188I TCNGA 3 cut(s) 247, 652, 723
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 6, 444
HpyAV CCTTC 2 cut(s) 21, 579
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 6 cut(s) 224, 232, 281, 332, 527, 644
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 3 cut(s) 141, 264, 432
Kzo9I GATC 4 cut(s) 336, 559, 711, 718
LmnI GCTCC 2 cut(s) 165, 403
Lsp1109I GCAGC 3 cut(s) 33, 216, 300
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 739
MaeII ACGT 1 cut(s) 582
MalI GATC 4 cut(s) 338, 561, 713, 720
MboI GATC 4 cut(s) 336, 559, 711, 718
MboII GAAGA 6 cut(s) 68, 71, 319, 440, 599, 711
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 4 cut(s) 364, 534, 550, 646
MlyI GAGTC 2 cut(s) 16, 439
MmeI TCCRAC 3 cut(s) 18, 225, 707
MnlI CCTC 9 cut(s) 24, 78, 205, 303, 411, 418, 422, 454, 699
MseI TTAA 3 cut(s) 297, 438, 546
MspI CCGG 3 cut(s) 71, 260, 353
MspR9I CCNGG 5 cut(s) 72, 165, 260, 261, 353
MunI CAATTG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 143
NciI CCSGG 4 cut(s) 72, 260, 261, 353
NdeII GATC 4 cut(s) 336, 559, 711, 718
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 348
NspI RCATGY 1 cut(s) 667
PaqCI CACCTGC 2 cut(s) 142, 337
PciI ACATGT 1 cut(s) 663
PfeI GAWTC 1 cut(s) 413
PflFI GACNNNGTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 4 cut(s) 48, 183, 231, 315
PleI GAGTC 2 cut(s) 16, 439
PpsI GAGTC 2 cut(s) 16, 439
PscI ACATGT 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 348
PstI CTGCAG 3 cut(s) 234, 334, 529
PsyI GACNNNGTC 1 cut(s) 25
RsaI GTAC 3 cut(s) 123, 668, 692
RsaNI GTAC 3 cut(s) 122, 667, 691
SaqAI TTAA 3 cut(s) 297, 438, 546
SatI GCNGC 4 cut(s) 47, 182, 230, 314
Sau3AI GATC 4 cut(s) 336, 559, 711, 718
SbfI CCTGCAGG 1 cut(s) 334
SchI GAGTC 2 cut(s) 16, 439
ScrFI CCNGG 5 cut(s) 72, 165, 260, 261, 353
SdaI CCTGCAGG 1 cut(s) 334
SduI GDGCHC 1 cut(s) 162
SetI ASST 8 cut(s) 100, 136, 169, 287, 331, 400, 585, 658
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 3 cut(s) 230, 330, 525
SmaI CCCGGG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse8387I CCTGCAGG 1 cut(s) 334
Sse9I AATT 4 cut(s) 364, 534, 550, 646
SsiI CCGC 6 cut(s) 49, 65, 143, 181, 201, 207
SspMI CTAG 1 cut(s) 739
StyD4I CCNGG 5 cut(s) 70, 163, 258, 259, 351
StyI CCWWGG 2 cut(s) 408, 419
TaiI ACGT 1 cut(s) 585
TaqI TCGA 1 cut(s) 29
TasI AATT 4 cut(s) 364, 534, 550, 646
TatI WGTACW 3 cut(s) 121, 666, 690
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 3 cut(s) 297, 438, 546
Tru9I TTAA 3 cut(s) 297, 438, 546
TscAI CASTG 2 cut(s) 346, 679
TseI GCWGC 3 cut(s) 46, 229, 313
TspDTI ATGAA 1 cut(s) 500
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 2 cut(s) 346, 679
Tth111I GACNNNGTC 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 137
XapI RAATTY 1 cut(s) 646
XceI RCATGY 1 cut(s) 667
XmaI CCCGGG 1 cut(s) 259
XspI CTAG 1 cut(s) 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.